Experiment set18IT050 for Sinorhizobium meliloti 1021

Compare to:

R2A-HEPES with volatiles from Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
SMc02766 -5.1 -19.9 tryptophan synthase subunit beta compare
SMc00235 -4.8 -9.9 anthranilate phosphoribosyltransferase compare
SMa1635 -4.8 -2.9 hypothetical protein compare
SMc02767 -4.5 -13.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc02765 -4.5 -13.0 tryptophan synthase subunit alpha compare
SMc00236 -4.4 -6.2 Indole-3-glycerol phosphate synthase compare
SMc02725 -3.9 -15.0 anthranilate synthase compare
SMc03127 -3.0 -2.0 ABC transporter permease compare
SM_b20810 -2.9 -21.2 membrane-located cell surface saccharide acetylase compare
SMc00017 -2.6 -1.5 homoserine kinase compare
SMc00917 -2.6 -4.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc00918 -2.5 -12.5 ATP phosphoribosyltransferase regulatory subunit compare
SMc01360 -2.5 -2.4 aspartate carbamoyltransferase catalytic subunit compare
SMc02570 -2.4 -6.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc02572 -2.3 -4.5 imidazole glycerol phosphate synthase subunit HisH compare
SMc02435 -2.3 -1.6 methyltransferase compare
SMc03100 -2.2 -1.6 hypothetical protein compare
SMc01222 -2.2 -10.5 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc03763 -2.0 -1.4 cytosine-specific methyltransferase compare
SMc00492 -2.0 -1.1 hypothetical protein compare
SMc00295 -1.9 -1.6 hypothetical protein compare
SMc01471 -1.9 -2.8 cytochrome C oxidase assembly factor transmembrane protein compare
SMc02362 -1.9 -1.2 cytochrome c-type biogenesis protein CcmE compare
SMc01004 -1.9 -9.2 phosphoribosyl-AMP cyclohydrolase compare
SMc01153 -1.8 -1.9 enoyl-CoA hydratase compare
SMc01880 -1.8 -2.0 pantoate--beta-alanine ligase compare
SMc02569 -1.7 -4.8 imidazole glycerol phosphate synthase subunit HisF compare
SMc01223 -1.7 -3.8 transcriptional regulator compare
SMc02719 -1.6 -1.5 transposase compare
SMc01361 -1.5 -3.2 dihydroorotase compare
SM_b20758 -1.5 -1.9 ArsR family transcriptional regulator compare
SMc00963 -1.5 -1.9 hypothetical protein compare
SMc02909 -1.4 -1.9 transglycosylase transmembrane protein compare
SMc02850 -1.4 -1.8 DNA polymerase I compare
SMc01187 -1.4 -1.8 rare lipoprotein A compare
SMc00067 -1.4 -7.0 outer-membranne lipoprotein compare
SMc02165 -1.3 -5.8 orotate phosphoribosyltransferase compare
SMc02307 -1.3 -6.9 histidinol dehydrogenase compare
SM_b20105 -1.3 -2.0 transcriptional regulator compare
SMc01929 -1.3 -2.2 hypothetical protein compare
SMc00010 -1.3 -1.4 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc01881 -1.3 -1.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc02234 -1.3 -1.9 hypothetical protein compare
SMc02425 -1.2 -3.6 transcriptional regulator compare
SMc02495 -1.2 -1.4 translaldolase compare
SMc03070 -1.2 -4.6 glucose-6-phosphate 1-dehydrogenase compare
SMc03839 -1.1 -2.1 hypothetical protein compare
SMc00337 -1.1 -2.2 hypothetical protein compare
SMc02166 -1.1 -6.3 dihydroorotase compare
SMc00293 -1.1 -5.5 homoserine dehydrogenase compare
SMa0450 -1.1 -1.7 hypothetical protein compare
SMc04391 -1.1 -1.6 3-ketoacyl-ACP reductase compare
SMc02245 -1.1 -4.5 dihydroorotate dehydrogenase 2 compare
SMc01242 -1.1 -1.5 signal peptide protein compare
SMc01363 -1.1 -1.4 hypothetical protein compare
SMc02897 -1.0 -1.9 cytochrome C transmembrane protein compare
SMc02137 -1.0 -3.8 ornithine carbamoyltransferase compare
SMc00073 -1.0 -1.8 hypothetical protein compare
SMc01364 -1.0 -1.4 DNA topoisomerase I compare
SMc01800 -1.0 -0.5 cytochrome C oxidase assembly transmembrane protein compare
SMc02115 -1.0 -0.8 hypothetical protein compare
SMc01120 -1.0 -2.8 hypothetical protein compare
SMc03050 -1.0 -2.8 flagellar biosynthesis regulatory protein FlaF compare
SMa1639 -1.0 -1.4 hypothetical protein compare
SM_b21479 -1.0 -2.4 hypothetical protein compare
SMc02055 -1.0 -1.3 phytoene synthase compare
SM_b21580 -1.0 -1.5 hypothetical protein compare
SMc01440 -1.0 -4.5 hydrolase serine protease transmembrane protein compare
SMc04296 -1.0 -0.8 cell division protein FtsZ compare
SM_b21173 -1.0 -1.6 hypothetical protein compare
SMc00579 -1.0 -2.8 dimethyladenosine transferase compare
SMc00640 -1.0 -5.4 phosphoserine aminotransferase compare
SMc04346 -1.0 -3.9 ketol-acid reductoisomerase compare
SM_b21174 -1.0 -3.7 phosphate uptake ABC transporter permease compare
SMa1697 -0.9 -1.3 hypothetical protein compare
SMc01441 -0.9 -3.5 membrane bound protease compare
SMc00815 -0.9 -1.2 inosine 5'-monophosphate dehydrogenase compare
SMa1765 -0.9 -1.4 hypothetical protein compare
SMc02058 -0.9 -2.9 YAJC protein compare
SMc02615 -0.9 -2.2 signal peptide protein compare
SMc02574 -0.9 -3.3 imidazoleglycerol-phosphate dehydratase compare
SM_b21176 -0.9 -2.9 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc00566 -0.9 -1.7 hypothetical protein compare
SMc00009 -0.9 -3.3 cytochrome C oxidase subunit II protein compare
SMc02755 -0.9 -3.4 S-adenosyl-L-homocysteine hydrolase compare
SM_b20814 -0.9 -5.0 hypothetical protein compare
SMc00580 -0.8 -1.9 4-hydroxythreonine-4-phosphate dehydrogenase compare
SM_b21177 -0.8 -3.8 phosphate uptake ABC transporter ATP-binding protein compare
SMc01494 -0.8 -4.4 phosphoserine phosphatase compare
SMc02866 -0.8 -2.6 transcriptional regulator compare
SMc00412 -0.8 -2.1 orotidine 5'-phosphate decarboxylase compare
SMc00361 -0.8 -2.2 hypothetical protein compare
SMc03746 -0.8 -1.8 hypothetical protein compare
SMc00188 -0.8 -4.1 cytochrome B transmembrane protein compare
SMc04453 -0.8 -1.2 hypothetical protein compare
SMc02724 -0.8 -2.0 hypothetical protein compare
SMa0753 -0.8 -0.8 hypothetical protein compare
SMc04385 -0.8 -2.6 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SMc00711 -0.8 -2.6 cyclohexadienyl dehydrogenase compare
SM_b21270 -0.8 -2.7 transcriptional regulator compare
SMc01144 -0.8 -2.6 ribonuclease PH compare
SMc00970 -0.7 -1.8 exodeoxyribonuclease VII small subunit compare
SMc02287 -0.7 -1.5 DNA-invertase compare
SMc04401 -0.7 -3.1 transcriptional regulator compare
SMc01801 -0.7 -1.5 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc00876 -0.7 -2.3 ATP-binding MRP protein compare
SMc00352 -0.7 -1.2 acetyltransferase compare
SMc03850 -0.7 -0.5 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc00859 -0.7 -1.4 hypothetical protein compare
SM_b20114 -0.7 -1.9 hypothetical protein compare
SM_b20752 -0.7 -3.0 3-hydroxyisobutyryl-CoA hydrolase compare
SMc00821 -0.7 -1.4 hypothetical protein compare
SMa2215 -0.7 -2.6 GntR family transcriptional regulator compare
SMc02373 -0.7 -1.1 hypothetical protein compare
SMc01858 -0.7 -0.9 S-adenosyl-methyltransferase MraW compare
SMa0846 -0.7 -1.0 transposase, fragment compare
SMc02505 -0.7 -1.0 hypothetical protein compare
SMc00013 -0.7 -1.2 cytochrome C oxidase subunit III transmembrane protein compare
SM_b20809 -0.7 -3.0 arabinose-5-phosphate isomerase compare
SMa0861 -0.7 -1.8 transposase, fragment compare
SMc00804 -0.7 -1.6 hypothetical protein compare
SMc01007 -0.7 -1.2 hypothetical protein compare
SMc01438 -0.7 -2.3 protease precursor signal peptide protein compare
SMc04327 -0.7 -1.0 hypothetical protein compare
SMa0955 -0.7 -1.2 GntR family transcriptional regulator compare
SMc00012 -0.7 -0.7 cytochrome C oxidase assembly protein compare
SMc00496 -0.7 -1.1 hypothetical protein compare
SMc04045 -0.7 -3.8 dihydroxy-acid dehydratase compare
SMc01176 -0.7 -2.1 hypothetical protein compare
SMc01607 -0.7 -3.5 permease compare
SMa0063 -0.6 -2.0 GntR family transcriptional regulator compare
SMc00461 -0.6 -1.2 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
SMc02050 -0.6 -2.0 trigger factor compare
SMc04404 -0.6 -1.0 amino acid efflux transmembrane protein compare
SMc01366 -0.6 -2.8 hypothetical protein compare
SM_b20021 -0.6 -0.7 transcriptional regulator compare
SMc00353 -0.6 -0.7 transmembrane protein compare
SM_b21679 -0.6 -1.0 hypothetical protein compare
SMc02862 -0.6 -3.3 Pit accessory protein compare
SMa2169 -0.6 -2.7 hypothetical protein compare
SMc00856 -0.6 -0.7 hypothetical protein compare
SMc02799 -0.6 -1.3 16S rRNA methyltransferase GidB compare
SMa0748 -0.6 -1.5 MucR family transcriptional regulator compare
SMc00416 -0.6 -2.3 hypothetical protein compare
SMa1285 -0.6 -2.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
SMc01644 -0.6 -1.5 ABC transporter permease compare
SMc02864 -0.6 -1.8 molybdopterin biosynthesis protein MoeB compare
SMc02051 -0.6 -1.2 hypothetical protein compare
SMc04432 -0.6 -2.0 hypothetical protein compare
SMc00712 -0.6 -1.0 hypothetical protein compare
SMc01579 -0.6 -0.7 hypothetical protein compare
SMc03258 -0.6 -3.1 transcriptional regulator compare
SMa2168 -0.6 -1.2 tRNA-Met compare
SMc01605 -0.6 -2.6 periplasmic binding ABC transporter protein compare
SMc00914 -0.6 -1.3 oxidoreductase compare
SMa2263 -0.6 -2.8 hypothetical protein compare
SMc00853 -0.6 -1.0 hypothetical protein compare
SMa0520 -0.6 -2.4 RpiR family transcriptional regulator compare
SMc02247 -0.6 -0.8 signal peptide protein compare
SMc01606 -0.6 -3.1 permease compare
SMa0267 -0.6 -2.5 GntR family transcriptional regulator compare
SMc02659 -0.6 -2.2 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein compare
SMc05011 -0.6 -2.4 bacteriophage DNA-binding transcription regulator compare
SM_b21072 -0.6 -3.5 hypothetical protein compare
SMc04262 -0.6 -2.4 6-phosphogluconate dehydrogenase compare
SMc00427 -0.6 -0.8 peptide chain release factor RF-3 protein compare
SMc03180 -0.6 -3.3 monovalent cation/H+ antiporter subunit C compare
SMc03751 -0.5 -2.5 hypothetical protein compare
SMc03978 -0.5 -0.8 transketolase compare
SMc02266 -0.5 -1.1 hypothetical protein compare
SMc02172 -0.5 -3.8 transcriptional regulator compare
SMc04030 -0.5 -1.5 hypothetical protein compare
SMc01608 -0.5 -2.4 ABC transporter ATP-binding protein compare
SMc04088 -0.5 -3.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SM_b21651 -0.5 -2.2 plasmid stability protein compare
SMc00091 -0.5 -3.1 sulfate adenylyltransferase compare
SMc00641 -0.5 -2.5 D-3-phosphoglycerate dehydrogenase compare
SMa5011 -0.5 -1.7 oxidoreductase compare
SMc03288 -0.5 -1.7 hypothetical protein compare
SMa0851 -0.5 -1.6 NodH sulfotransferase compare
SMc03837 -0.5 -2.3 ABC transporter ATP-binding protein compare
SM_b20880 -0.5 -3.4 ATP-dependent RNA helicase compare
SMa1702 -0.5 -2.1 hypothetical protein compare
SMc04460 -0.5 -4.1 glycogen phosphorylase compare
SMa5007 -0.5 -2.0 transcriptional regulator compare
SMc01147 -0.5 -0.9 coproporphyrinogen III oxidase compare
SMc01431 -0.5 -3.8 acetolactate synthase 3 catalytic subunit compare
SMc02164 -0.5 -1.3 fructokinase compare
SMc00880 -0.5 -2.1 oxidoreductase compare
SMc04239 -0.5 -2.3 hypothetical protein compare
SM_b20413 -0.5 -0.7 hypothetical protein compare
SMc02385 -0.5 -1.3 hypothetical protein compare
SMc02510 -0.5 -0.4 ferric uptake regulation protein compare
SMa5014 -0.5 -2.1 hypothetical protein compare
SMc01553 -0.5 -1.6 acyl carrier protein compare
SM_b21055 -0.5 -2.1 hypothetical protein compare
SMc00981 -0.5 -2.3 ferredoxin protein compare
SMc01091 -0.5 -1.1 hypothetical protein compare
SM_b20411 -0.5 -2.1 hypothetical protein compare
SMa0870 -0.5 -1.8 NodD1 nod-box dependent transcriptional activator compare


Specific Phenotypes

None in this experiment

For Sinorhizobium meliloti 1021 in volatiles experiments