Experiment set18IT049 for Sinorhizobium meliloti 1021

Compare to:

R2A-HEPES with volatiles from Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
SMc02766 -5.8 -19.8 tryptophan synthase subunit beta compare
SMc02767 -5.8 -9.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc00236 -5.7 -7.5 Indole-3-glycerol phosphate synthase compare
SMc00235 -5.3 -8.1 anthranilate phosphoribosyltransferase compare
SMc02765 -5.0 -14.1 tryptophan synthase subunit alpha compare
SMc02725 -4.4 -15.7 anthranilate synthase compare
SMa1635 -4.1 -2.9 hypothetical protein compare
SMc00017 -3.7 -2.0 homoserine kinase compare
SMc02115 -3.7 -1.5 hypothetical protein compare
SMc03967 -3.1 -2.1 Holliday junction resolvase compare
SMc02569 -2.9 -5.5 imidazole glycerol phosphate synthase subunit HisF compare
SM_b20810 -2.6 -20.1 membrane-located cell surface saccharide acetylase compare
SMc00918 -2.5 -10.8 ATP phosphoribosyltransferase regulatory subunit compare
SMc02570 -2.3 -9.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc01880 -2.2 -1.5 pantoate--beta-alanine ligase compare
SMc01004 -2.2 -9.5 phosphoribosyl-AMP cyclohydrolase compare
SMc02858 -2.2 -0.8 chaperone protein DnaJ compare
SMc02572 -2.2 -6.6 imidazole glycerol phosphate synthase subunit HisH compare
SMc00917 -2.1 -5.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc03763 -2.1 -1.4 cytosine-specific methyltransferase compare
SMc00013 -2.0 -2.4 cytochrome C oxidase subunit III transmembrane protein compare
SMc02307 -1.9 -8.8 histidinol dehydrogenase compare
SMc01222 -1.9 -10.0 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc02362 -1.9 -1.2 cytochrome c-type biogenesis protein CcmE compare
SMc00334 -1.8 -1.2 cytidylate kinase compare
SMc04346 -1.7 -5.8 ketol-acid reductoisomerase compare
SMc03069 -1.7 -2.7 6-phosphogluconolactonase compare
SMc02055 -1.7 -1.7 phytoene synthase compare
SMc01881 -1.6 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc02833 -1.6 -1.6 penicillin-insensitive murein endopeptidase compare
SMc00580 -1.6 -2.9 4-hydroxythreonine-4-phosphate dehydrogenase compare
SM_b20948 -1.6 -2.1 glucosyltransferase compare
SMc00412 -1.6 -4.5 orotidine 5'-phosphate decarboxylase compare
SMc01223 -1.5 -2.2 transcriptional regulator compare
SMc01361 -1.5 -2.6 dihydroorotase compare
SMc00073 -1.5 -2.3 hypothetical protein compare
SMc02755 -1.5 -4.8 S-adenosyl-L-homocysteine hydrolase compare
SMc00856 -1.4 -1.3 hypothetical protein compare
SM_b20701 -1.4 -1.5 hypothetical protein compare
SMc02435 -1.4 -1.8 methyltransferase compare
SMc01147 -1.4 -1.6 coproporphyrinogen III oxidase compare
SMc01153 -1.4 -1.4 enoyl-CoA hydratase compare
SMc02050 -1.4 -2.9 trigger factor compare
SMc02576 -1.3 -1.9 acetyltransferase compare
SMc00640 -1.3 -5.4 phosphoserine aminotransferase compare
SMc01765 -1.2 -2.0 hypothetical protein compare
SMc00619 -1.2 -1.3 hypothetical protein compare
SMc03229 -1.2 -1.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc01933 -1.2 -1.0 hypothetical protein compare
SMc00711 -1.2 -2.4 cyclohexadienyl dehydrogenase compare
SMc02165 -1.2 -4.7 orotate phosphoribosyltransferase compare
SMc01471 -1.2 -2.1 cytochrome C oxidase assembly factor transmembrane protein compare
SMc02245 -1.1 -3.5 dihydroorotate dehydrogenase 2 compare
SMc03839 -1.1 -1.6 hypothetical protein compare
SMc03127 -1.1 -1.1 ABC transporter permease compare
SMc02897 -1.1 -1.9 cytochrome C transmembrane protein compare
SMc00876 -1.1 -2.7 ATP-binding MRP protein compare
SMc00566 -1.1 -2.1 hypothetical protein compare
SMc02425 -1.1 -2.5 transcriptional regulator compare
SMc00650 -1.1 -1.5 hypothetical protein compare
SMc03184 -1.1 -1.5 PH adaptation potassium efflux system G transmembrane protein compare
SM_b20880 -1.0 -5.9 ATP-dependent RNA helicase compare
SMc00010 -1.0 -1.3 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc02862 -1.0 -5.1 Pit accessory protein compare
SMc02719 -1.0 -1.1 transposase compare
SMc01801 -1.0 -1.6 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc02850 -1.0 -1.6 DNA polymerase I compare
SM_b21177 -1.0 -4.3 phosphate uptake ABC transporter ATP-binding protein compare
SMa0450 -1.0 -2.2 hypothetical protein compare
SMc02574 -1.0 -2.9 imidazoleglycerol-phosphate dehydratase compare
SMc00427 -1.0 -1.2 peptide chain release factor RF-3 protein compare
SM_b20814 -1.0 -5.6 hypothetical protein compare
SMc00963 -1.0 -1.3 hypothetical protein compare
SMc01494 -1.0 -5.7 phosphoserine phosphatase compare
SMa1365 -0.9 -0.7 ATP-binding protein compare
SMc01091 -0.9 -2.0 hypothetical protein compare
SMc04357 -0.9 -2.8 hypothetical protein compare
SMc00361 -0.9 -2.5 hypothetical protein compare
SMc01770 -0.9 -1.9 serine hydroxymethyltransferase compare
SMc02137 -0.9 -3.2 ornithine carbamoyltransferase compare
SMc03066 -0.9 -2.0 hypothetical protein compare
SMc04296 -0.9 -0.7 cell division protein FtsZ compare
SMc01427 -0.9 -1.4 hypothetical protein compare
SMc00353 -0.9 -1.5 transmembrane protein compare
SMa5010 -0.9 -1.1 hypothetical protein compare
SMc02978 -0.9 -2.8 hypothetical protein compare
SMc02558 -0.9 -2.7 hypothetical protein compare
SMc00293 -0.9 -3.9 homoserine dehydrogenase compare
SMc01441 -0.9 -3.2 membrane bound protease compare
SMc01836 -0.9 -2.4 hypothetical protein compare
SMc01315 -0.9 -1.3 hypothetical protein compare
SMc02659 -0.9 -3.6 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein compare
SMc01360 -0.9 -1.6 aspartate carbamoyltransferase catalytic subunit compare
SMc02166 -0.8 -4.4 dihydroorotase compare
SMa0758 -0.8 -2.6 hypothetical protein compare
SM_b21469 -0.8 -1.7 hypothetical protein compare
SM_b21479 -0.8 -2.0 hypothetical protein compare
SMc00492 -0.8 -0.6 hypothetical protein compare
SMc00641 -0.8 -4.0 D-3-phosphoglycerate dehydrogenase compare
SMc02450 -0.8 -1.3 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
SMa0734 -0.8 -1.6 hypothetical protein compare
SMc03140 -0.8 -3.0 transcriptional regulator compare
SMa1765 -0.8 -1.3 hypothetical protein compare
SMc00853 -0.8 -1.2 hypothetical protein compare
SMc00821 -0.8 -1.2 hypothetical protein compare
SMc02799 -0.8 -1.8 16S rRNA methyltransferase GidB compare
SMc01726 -0.8 -3.4 acetylglutamate kinase compare
SMc01208 -0.8 -1.9 peptidyl-prolyl cis-trans isomerase B protein compare
SMc04085 -0.8 -2.0 hypothetical protein compare
SMc01644 -0.8 -1.7 ABC transporter permease compare
SMc04432 -0.8 -3.2 hypothetical protein compare
SMc02121 -0.8 -1.3 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, ATPase component (from data) compare
SMc00719 -0.8 -2.5 hypoxanthine-guanine phosphoribosyltransferase compare
SMc04454 -0.8 -2.6 ABC transporter ATP-binding protein compare
SMc00194 -0.7 -2.0 hypothetical protein compare
SMc00281 -0.7 -1.8 signal peptide protein compare
SMc00928 -0.7 -0.9 signal peptide protein compare
SMa0846 -0.7 -1.0 transposase, fragment compare
SMc01991 -0.7 -1.3 short chain dehydrogenase compare
SMc01183 -0.7 -0.8 LexA repressor compare
SM_b20809 -0.7 -3.3 arabinose-5-phosphate isomerase compare
SM_b22005 -0.7 -1.3 hypothetical protein compare
SMc00166 -0.7 -0.9 oxidoreductase NAD protein compare
SM_b20427 -0.7 -1.9 amino acid ABC transporter ATP-binding protein compare
SM_b20400 -0.7 -2.5 hypothetical protein compare
SMc03899 -0.7 -0.9 hypothetical protein compare
SM_b20448 -0.7 -2.4 hypothetical protein compare
SMc00189 -0.7 -2.3 cytochrome C1 protein compare
SM_b21176 -0.7 -2.2 phosphate uptake ABC transporter substrate-binding protein precursor compare
SM_b20072 -0.7 -3.4 rhizopine binding protein compare
SMc01440 -0.7 -2.4 hydrolase serine protease transmembrane protein compare
SMc04453 -0.7 -1.0 hypothetical protein compare
SMc00959 -0.7 -1.3 hypothetical protein compare
SMc04385 -0.7 -1.9 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SM_b21633 -0.7 -0.9 enoyl-CoA hydratase compare
SMc03800 -0.7 -2.9 hypothetical protein compare
SMc01505 -0.7 -1.1 hypothetical protein compare
SM_b20280 -0.7 -2.1 hypothetical protein compare
SMc04383 -0.7 -2.5 putative hydrolase, required for lysine catabolism (from data) compare
SMa1002 -0.7 -1.3 hypothetical protein compare
SMc03236 -0.7 -2.2 glutamine amidotransferase compare
SMa1368 -0.7 -1.6 hypothetical protein compare
SMc03070 -0.7 -2.5 glucose-6-phosphate 1-dehydrogenase compare
SMc00981 -0.7 -2.9 ferredoxin protein compare
SMc02250 -0.7 -1.7 large-conductance mechanosensitive channel compare
SMc01607 -0.7 -3.6 permease compare
SMc02232 -0.7 -1.1 hypothetical protein compare
SMc03100 -0.7 -0.5 hypothetical protein compare
SMa1902 -0.7 -2.4 hypothetical protein compare
SMc02247 -0.7 -0.9 signal peptide protein compare
SM_b20026 -0.6 -1.3 hypothetical protein compare
SMc00302 -0.6 -0.9 hypothetical protein compare
SMc00496 -0.6 -1.0 hypothetical protein compare
SMa1933 -0.6 -2.0 LysR family transcriptional regulator compare
SM_b21213 -0.6 -2.4 serinethreonine protein phosphatase compare
SMa0545 -0.6 -2.8 hypothetical protein compare
SMa1239 -0.6 -1.6 NapD component of periplasmic nitrate reductase compare
SMc02434 -0.6 -2.2 hypothetical protein compare
SMc02145 -0.6 -0.3 signal peptide protein compare
SMc00067 -0.6 -2.7 outer-membranne lipoprotein compare
SM_b20387 -0.6 -1.0 transcriptional regulator compare
SMc02246 -0.6 -0.3 hypothetical protein compare
SMc02287 -0.6 -1.7 DNA-invertase compare
SMc01931 -0.6 -2.0 hypothetical protein compare
SMc04351 -0.6 -3.7 transmembrane ATP-binding ABC transporter protein compare
SMc04350 -0.6 -4.1 multidrug efflux system transmembrane protein compare
SMc03978 -0.6 -0.8 transketolase compare
SMc00188 -0.6 -3.3 cytochrome B transmembrane protein compare
SMc04045 -0.6 -3.1 dihydroxy-acid dehydratase compare
SMc03028 -0.6 -0.9 flagellar basal body rod protein FlgC compare
SMc04090 -0.6 -2.4 sun protein compare
SMc02838 -0.6 -2.5 phosphoglyceromutase compare
SMc01242 -0.6 -0.9 signal peptide protein compare
SMa1770 -0.6 -0.8 hypothetical protein compare
SMc03153 -0.6 -1.4 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
SMa0063 -0.6 -2.4 GntR family transcriptional regulator compare
SMc04330 -0.6 -0.7 trimethylamine methyltransferase compare
SMc01613 -0.6 -1.5 ribose-5-phosphate isomerase B compare
SMc03111 -0.6 -4.0 mannose 6-phosphate isomerase (EC 5.3.1.8) (from data) compare
SMa0543 -0.6 -1.3 hypothetical protein compare
SMc02495 -0.6 -0.7 translaldolase compare
SMc01605 -0.6 -2.9 periplasmic binding ABC transporter protein compare
SMc01606 -0.6 -2.7 permease compare
SMc00579 -0.6 -1.8 dimethyladenosine transferase compare
SMc00009 -0.6 -2.3 cytochrome C oxidase subunit II protein compare
SMc03183 -0.6 -1.7 monovalent cation/H+ antiporter subunit F compare
SMc03787 -0.6 -1.3 hypothetical protein compare
SMc02200 -0.6 -3.6 hypothetical protein compare
SMc01431 -0.6 -3.8 acetolactate synthase 3 catalytic subunit compare
SM_b20663 -0.6 -1.3 hypothetical protein compare
SMc01461 -0.6 -2.5 DNA helicase II protein compare
SMc04352 -0.6 -3.3 signal peptide protein compare
SMa0748 -0.6 -1.0 MucR family transcriptional regulator compare
SMc04246 -0.6 -0.7 transmembrane signal peptide protein compare
SMc03795 -0.6 -1.0 isopropylmalate isomerase small subunit compare
SM_b20117 -0.6 -1.0 sugar transferase compare
SMc02505 -0.5 -0.4 hypothetical protein compare
SMa0861 -0.5 -1.3 transposase, fragment compare
SMc04360 -0.5 -3.1 hypothetical protein compare
SMc02203 -0.5 -2.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Sinorhizobium meliloti 1021 in volatiles experiments