Experiment set18IT041 for Sinorhizobium meliloti 1021

Compare to:

R2A-HEPES control for volatile experiments

200 most detrimental genes:

  gene name fitness t score description  
SMc02142 +2.2 8.4 phosphate transporter ATP-binding protein compare
SMc02147 +1.7 4.9 phosphate regulon sensor histidine kinase transmembrane protein compare
SM_b20803 +1.7 7.7 3-deoxy-manno-octulosonate cytidylyltransferase compare
SMc02084 +1.3 1.7 biopolymer transport transmembrane protein compare
SMa1095 +1.2 1.5 hypothetical protein compare
SM_b20509 +1.2 3.5 transcriptional regulator compare
SMc02143 +1.2 2.5 phosphate ABC transporter permease compare
SM_b20804 +1.2 7.2 hypothetical protein compare
SMc00522 +1.1 8.2 ATP-dependent RNA helicase compare
SMc04094 +1.1 4.0 hypothetical protein compare
SM_b21347 +1.1 2.5 pectin degradation protein compare
SMc02693 +1.1 1.8 peptidyl-tRNA hydrolase compare
SMc02778 +1.0 1.5 hydroxyacid aldolase compare
SMa0789 +1.0 2.6 GntR family transcriptional regulator compare
SMc03973 +1.0 6.4 hypothetical protein compare
SMa0132 +1.0 2.4 hypothetical protein compare
SMc03242 +1.0 2.3 GTP-binding protein compare
SMc00191 +0.9 2.0 hypothetical protein compare
SMc00647 +0.9 3.0 ribosomal large subunit pseudouridine synthase compare
SMa1770 +0.9 1.6 hypothetical protein compare
SM_b22023 +0.9 1.4 molecular chaperone GroES compare
SM_b20897 +0.9 2.0 hypothetical protein compare
SM_b20805 +0.8 6.0 glycosyltransferase compare
SMa1700 +0.8 1.1 hypothetical protein compare
SMa0211 +0.8 1.4 hypothetical protein compare
SMc04168 +0.8 2.6 hypothetical protein compare
SMc03801 +0.8 1.7 thioredoxin protein compare
SMa1933 +0.8 1.6 LysR family transcriptional regulator compare
SMa1625 +0.8 2.3 LysR family transcriptional regulator compare
SMc02248 +0.8 2.1 transcriptional regulator compare
SMc00329 +0.8 2.3 iron response regulator protein compare
SMa0909 +0.8 1.4 hypothetical protein compare
SMc02140 +0.7 0.6 phosphate regulon transcriptional regulatory protein compare
SM_b20398 +0.7 1.7 hypothetical protein compare
SMa2363 +0.7 3.4 amidase compare
SMa0144 +0.7 0.7 hypothetical protein compare
SMc00003 +0.7 2.6 chaperone protein compare
SMc04052 +0.7 1.3 transcriptional regulator compare
SM_b20808 +0.7 5.6 hypothetical protein compare
SMc02141 +0.7 1.7 phosphate transporter PhoU compare
SMc02976 +0.7 2.8 transcriptional regulator compare
SMc01024 +0.7 1.2 preprotein translocase subunit SecG compare
SMc01651 +0.7 1.5 transcriptional regulator compare
SMc04014 +0.7 2.9 hypothetical protein compare
SMa0992 +0.7 2.2 hypothetical protein compare
SMc01770 +0.7 1.3 serine hydroxymethyltransferase compare
SMa1757 +0.7 1.7 Short chain compare
SM_b20806 +0.7 3.1 hypothetical protein compare
SMc01026 +0.7 2.5 hypothetical protein compare
SMc01850 +0.7 1.9 hypothetical protein compare
SM_b20075 +0.7 1.7 hypothetical protein compare
SM_b20267 +0.7 2.9 D-amino acid dehydrogenase compare
SMc01723 +0.7 1.4 hypothetical protein compare
SMa0126 +0.7 1.1 CspA8 Cold shock family protein compare
SMa1509 +0.7 3.2 ATP transporter ATP-binding protein compare
SMc01636 +0.6 2.4 transcriptional regulator compare
SMc03878 +0.6 1.5 acetoacetyl-CoA reductase compare
SMc00555 +0.6 1.0 colicin V production transmembrane protein compare
SMa0854 +0.6 1.8 3-ketoacyl-ACP reductase compare
SMc00334 +0.6 0.5 cytidylate kinase compare
SMa1924 +0.6 0.7 hypothetical protein compare
SMc01241 +0.6 1.5 hypothetical protein compare
SMa0922 +0.6 2.8 hypothetical protein compare
SMc02892 +0.6 2.5 transporter compare
SMa1979 +0.6 3.0 LysR family transcriptional regulator compare
SMa0647 +0.6 1.7 hypothetical protein compare
SMa0527 +0.6 2.9 phosphatase compare
SMc04092 +0.6 1.8 hypothetical protein compare
SM_b20086 +0.6 1.4 hypothetical protein compare
SMa0232 +0.6 2.6 hypothetical protein compare
SMa0883 +0.6 1.9 hypothetical protein compare
SMc04220 +0.6 1.0 transcriptional regulator compare
SM_b20083 +0.6 1.5 hypothetical protein compare
SMc03134 +0.6 1.4 hypothetical protein compare
SMa0833 +0.6 1.1 hypothetical protein compare
SMc02114 +0.6 1.4 hypothetical protein compare
SMc04233 +0.6 1.8 hypothetical protein compare
SMc02694 +0.6 1.1 ATP-dependent Clp protease adaptor compare
SM_b20725 +0.6 1.2 hypothetical protein compare
SMa1136 +0.6 1.9 hypothetical protein compare
SMc03979 +0.6 1.3 glyceraldehyde-3-phosphate dehydrogenase compare
SM_b20250 +0.6 1.9 hypothetical protein compare
SMc01858 +0.6 0.9 S-adenosyl-methyltransferase MraW compare
SMc01244 +0.6 1.7 tRNA-Ala compare
SMc00184 +0.6 1.8 tRNA/rRNA methyltransferase compare
SM_b20562 +0.6 3.9 hypothetical protein compare
SMc02485 +0.6 0.9 signal peptide protein compare
SMa1245 +0.5 2.3 Crp/fnr-like transcriptional regulator compare
SM_b21454 +0.5 1.2 hypothetical protein compare
SMc00656 +0.5 0.9 hypothetical protein compare
SMc02696 +0.5 1.9 hypothetical protein compare
SMc03159 +0.5 0.8 ABC transporter ATP-binding protein compare
SMc02486 +0.5 2.6 oxidoreductase compare
SM_b20475 +0.5 2.8 hypothetical protein compare
SMc01800 +0.5 0.4 cytochrome C oxidase assembly transmembrane protein compare
SMc00355 +0.5 1.5 hypothetical protein compare
SMa1279 +0.5 2.8 NorE accessory protein for nitric oxide reductase compare
SMc01346 +0.5 1.6 leucyl/phenylalanyl-tRNA--protein transferase compare
SMc03004 +0.5 2.6 chemoreceptor (methyl-accepting chemotaxis protein) compare
SMc03123 +0.5 4.5 transcriptional regulator compare
SM_b21218 +0.5 1.8 glucosamine-6-phosphate deaminase, isomerizing (EC 3.5.99.6) (from data) compare
SM_b20261 +0.5 1.7 malate dehydrogenase compare
SMc02640 +0.5 1.8 UDP-glucuronic acid epimerase compare
SMa0421 +0.5 1.9 hypothetical protein compare
SMc00413 +0.5 2.6 hypothetical protein compare
SM_b21173 +0.5 1.2 hypothetical protein compare
SMc00196 +0.5 2.5 transporter compare
SMc01094 +0.5 1.9 multidrug efflux system transmembrane protein compare
SMa1154 +0.5 1.6 hypothetical protein compare
SMc00321 +0.5 2.3 tRNA pseudouridine synthase B compare
SMa1434 +0.5 2.8 ABC transporter ATP-binding protein compare
SMc00302 +0.5 0.5 hypothetical protein compare
SM_b20811 +0.5 1.3 hypothetical protein compare
SMc01985 +0.5 2.3 cytochrome-c oxidase compare
SMa0933 +0.5 1.2 TraC conjugal transfer protein compare
SMc03928 +0.5 3.2 hypothetical protein compare
SMa1381 +0.5 2.1 oxidase compare
SMc00928 +0.5 0.5 signal peptide protein compare
SMc01557 +0.5 1.5 signal peptide protein compare
SMa2091 +0.5 1.2 hypothetical protein compare
SMc02901 +0.5 0.6 hypothetical protein compare
SMc00761 +0.5 3.0 oxidoreductase compare
SMc03871 +0.5 2.4 ABC transporter ATP-binding protein compare
SM_b21264 +0.5 3.2 hypothetical protein compare
SMa0838 +0.5 1.5 SyrA protein involved in EPS production compare
SMc03006 +0.5 0.8 chemotaxis regulator protein compare
SM_b20055 +0.5 1.3 transcriptional regulator compare
SMc03235 +0.5 1.8 hypothetical protein compare
SMc02149 +0.5 0.5 hypothetical protein compare
SMc02859 +0.5 1.6 hypothetical protein compare
SMc04008 +0.5 1.2 hypothetical protein compare
SMc02867 +0.5 1.3 multidrug-efflux system transmembrane protein compare
SMc04265 +0.5 1.8 hypothetical protein compare
SMc02868 +0.5 2.0 multidrug efflux system protein compare
SM_b20563 +0.5 1.7 hypothetical protein compare
SMc02460 +0.5 3.3 hypothetical protein compare
SM_b20618 +0.5 2.2 thiamine-phosphate pyrophosphorylase compare
SM_b20428 +0.5 1.6 amino acid ABC transporter substrate-binding protein compare
SMc03889 +0.5 1.0 transporter compare
SM_b20953 +0.5 0.6 hypothetical protein compare
SM_b20655 +0.5 0.9 hypothetical protein compare
SMc02812 +0.5 1.6 hypothetical protein compare
SMa0259 +0.5 2.7 hypothetical protein compare
SMc02246 +0.5 0.3 hypothetical protein compare
SMa2009 +0.5 2.4 hypothetical protein compare
SMc01655 +0.5 1.2 ABC transporter permease compare
SMc00061 +0.5 2.0 hypothetical protein compare
SMc01509 +0.5 1.3 hypothetical protein compare
SMc01424 +0.5 1.8 nitrile hydratase subunit alpha protein compare
SMc04359 +0.5 3.1 transmembrane protein compare
SMa0714 +0.5 1.8 ABC transporter ATP-binding protein compare
SMa1398 +0.5 1.5 3-ketoacyl-ACP reductase compare
SMa0081 +0.5 1.8 ABC transporter permease compare
SM_b20293 +0.5 0.6 hypothetical protein compare
SMc00484 +0.5 1.7 hypothetical protein compare
SMa2020 +0.5 1.8 Transcriptional regulator compare
SMc03855 +0.5 0.7 hypothetical protein compare
SMc02566 +0.5 1.1 alkylated DNA repair protein compare
SMa1507 +0.5 3.0 hypothetical protein compare
SMc03289 +0.5 1.1 hypothetical protein compare
SM_b21111 +0.5 1.3 oxidoreductase, RED superfamily protein compare
SMc04051 +0.5 0.7 RNA polymerase sigma-E factor (sigma-24) protein compare
SMc00129 +0.5 3.3 sensor histidine kinase compare
SMa2281 +0.5 1.3 hypothetical protein compare
SMa0606 +0.5 1.7 hypothetical protein compare
SM_b20724 +0.5 1.6 hypothetical protein compare
SMc04297 +0.4 1.8 transcriptional regulator compare
SMa1630 +0.4 0.9 hypothetical protein compare
SM_b20595 +0.4 1.5 cell division protein FtsK compare
SM_b20270 +0.4 1.2 proline racemase compare
SMc02642 +0.4 2.4 signal peptide protein compare
SMc01220 +0.4 1.8 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMa1784 +0.4 2.7 hypothetical protein compare
SMc01831 +0.4 1.1 urease accessory protein compare
SMc01495 +0.4 1.8 transcriptional regulator compare
SM_b20375 +0.4 1.2 transcriptional regulator compare
SMa1261 +0.4 1.8 hypothetical protein compare
SMc02344 +0.4 2.0 periplasmic binding protein compare
SMc04226 +0.4 1.8 lipoprotein transmembrane compare
SMc02655 +0.4 1.3 hypothetical protein compare
SMc00916 +0.4 2.3 glutathione S-transferase compare
SMc02306 +0.4 0.8 hypothetical protein compare
SMc01146 +0.4 0.9 deoxyribonucleotide triphosphate pyrophosphatase compare
SMc00147 +0.4 1.3 hypothetical protein compare
SMc01426 +0.4 2.0 hypothetical protein compare
SMa1178 +0.4 2.2 hypothetical protein compare
SMc02144 +0.4 0.8 phosphate ABC transporter permease compare
SMa1367 +0.4 0.8 short chain alcohol dehydrogenase-related dehydrogenase compare
SMa0343 +0.4 1.4 hypothetical protein compare
SMc00576 +0.4 1.9 hypothetical protein compare
SM_b20383 +0.4 1.4 ABC transporter substrate-binding protein compare
SMc03210 +0.4 2.0 transcriptional regulator compare
SMc02814 +0.4 2.4 transport transmembrane protein compare
SMc01015 +0.4 1.7 hypothetical protein compare
SMc02554 +0.4 2.2 hypothetical protein compare
SMc02088 +0.4 2.2 hypothetical protein compare
SMc01930 +0.4 0.9 hypothetical protein compare
SMa5021 +0.4 1.5 hypothetical protein compare
SMa1188 +0.4 1.5 NosX accesory protein compare
SM_b20296 +0.4 1.9 permease compare


Specific Phenotypes

None in this experiment

For Sinorhizobium meliloti 1021 in r2a-hepes control experiments