Experiment set18IT039 for Bacteroides thetaiotaomicron VPI-5482
Post-colonization (Day 14) - Cage3;Mouse1
Group: mouse_post_colonizationMedia:
Culturing: Btheta_ML6a
By: Deanna Pepin on 2/1/21
Specific Phenotypes
For 15 genes in this experiment
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Alanine and aspartate metabolism
- Glutamate metabolism
- beta-Alanine metabolism
- Taurine and hypotaurine metabolism
- Cyanoamino acid metabolism
- Starch and sucrose metabolism
- Nucleotide sugars metabolism
- Butanoate metabolism
- Nitrogen metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-asparagine degradation I | 1 | 1 | 1 |
| L-glutamate degradation IX (via 4-aminobutanoate) | 1 | 1 | 1 |
| L-asparagine degradation III (mammalian) | 3 | 2 | 1 |
| starch degradation IV | 3 | 1 | 1 |
| superpathway of L-aspartate and L-asparagine biosynthesis | 4 | 4 | 1 |
| starch degradation III | 4 | 3 | 1 |
| GABA shunt II | 4 | 1 | 1 |
| GABA shunt I | 4 | 1 | 1 |
| mammalian high-mannose N-glycan degradation | 5 | 5 | 1 |
| N-(1-deoxy-D-fructos-1-yl)-L-asparagine degradation | 5 | 3 | 1 |
| yeast mannan degradation | 5 | 3 | 1 |