Experiment set18IT034 for Burkholderia phytofirmans PsJN

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Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS02570 -9.1 -3.3 phosphocarrier protein HPr compare
BPHYT_RS35885 -8.9 -3.3 hypothetical protein compare
BPHYT_RS17690 -8.2 -5.7 imidazole glycerol phosphate synthase compare
BPHYT_RS33875 -7.7 -5.3 tryptophan synthase subunit alpha compare
BPHYT_RS16270 -7.5 -3.2 phosphoglycerate kinase compare
BPHYT_RS33835 -7.5 -4.9 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS03150 -7.5 -7.3 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS17685 -7.5 -4.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS17680 -7.4 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS18320 -7.3 -5.1 orotate phosphoribosyltransferase compare
BPHYT_RS14910 -7.3 -7.1 chorismate mutase compare
BPHYT_RS14120 -7.2 -6.1 chemotaxis protein CheY compare
BPHYT_RS33915 -7.1 -4.4 isopropylmalate isomerase compare
BPHYT_RS06555 -7.0 -4.8 ketol-acid reductoisomerase compare
BPHYT_RS17380 -7.0 -4.8 ribulose-phosphate 3-epimerase compare
BPHYT_RS16085 -6.9 -2.9 DeoR faimly transcriptional regulator compare
BPHYT_RS12845 -6.9 -17.8 ATPase compare
BPHYT_RS17675 -6.8 -1.5 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS33865 -6.8 -4.7 tryptophan synthase alpha chain compare
BPHYT_RS33900 -6.7 -8.0 3-isopropylmalate dehydrogenase compare
BPHYT_RS17670 -6.7 -3.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS16245 -6.6 -5.2 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS17395 -6.6 -1.4 anthranilate synthase subunit II compare
BPHYT_RS18760 -6.5 -2.4 flagellar biosynthesis protein FliT compare
BPHYT_RS17945 -6.5 -1.4 cytochrome C biogenesis protein compare
BPHYT_RS14915 -6.5 -6.8 phosphoserine aminotransferase compare
BPHYT_RS17855 -6.5 -4.5 glutamate synthase compare
BPHYT_RS17715 -6.4 -7.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS01595 -6.3 -9.7 homoserine O-acetyltransferase compare
BPHYT_RS17390 -6.3 -11.4 anthranilate synthase subunit I compare
BPHYT_RS13705 -6.3 -3.0 chorismate synthase compare
BPHYT_RS06600 -6.2 -1.3 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS33535 -6.2 -23.8 RNA polymerase sigma factor RpoD compare
BPHYT_RS33880 -6.1 -3.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS06065 -6.1 -12.0 cytochrome C compare
BPHYT_RS02690 -6.0 -9.4 protoheme IX farnesyltransferase compare
BPHYT_RS16905 -6.0 -5.5 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS21705 -6.0 -5.8 sulfoacetaldehyde acetyltransferase compare
BPHYT_RS14130 -5.9 -9.5 phosphate ABC transporter ATP-binding protein compare
BPHYT_RS03170 -5.9 -2.2 membrane protein compare
BPHYT_RS15915 -5.8 -5.7 ornithine carbamoyltransferase compare
BPHYT_RS12530 -5.8 -4.9 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS33840 -5.7 -6.8 amidophosphoribosyltransferase compare
BPHYT_RS08955 -5.7 -3.4 homoserine dehydrogenase compare
BPHYT_RS04955 -5.7 -1.2 methionyl-tRNA synthetase compare
BPHYT_RS17885 -5.7 -3.9 3-dehydroquinate synthase compare
BPHYT_RS33920 -5.6 -5.5 type II citrate synthase compare
BPHYT_RS02525 -5.6 -3.9 membrane protein compare
BPHYT_RS15920 -5.6 -8.7 argininosuccinate synthase compare
BPHYT_RS14865 -5.5 -2.1 UDP-glucose 6-dehydrogenase compare
BPHYT_RS14190 -5.5 -8.4 carbamoyl phosphate synthase large subunit compare
BPHYT_RS14845 -5.4 -2.6 cysteine synthase compare
BPHYT_RS03535 -5.4 -4.6 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS12465 -5.3 -2.2 inositol monophosphatase compare
BPHYT_RS13220 -5.3 -4.7 phosphomethylpyrimidine synthase compare
BPHYT_RS02665 -5.2 -12.2 MFS transporter compare
BPHYT_RS06905 -5.1 -8.6 excinuclease ABC subunit B compare
BPHYT_RS33645 -5.1 -3.0 homoserine kinase compare
BPHYT_RS14895 -5.0 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS14115 -4.9 -3.9 sensor histidine kinase compare
BPHYT_RS36275 -4.9 -1.8 hypothetical protein compare
BPHYT_RS17265 -4.9 -1.1 cell division protein compare
BPHYT_RS14400 -4.8 -2.2 anti-sigma factor compare
BPHYT_RS02885 -4.8 -6.9 glmZ(sRNA)-inactivating NTPase compare
BPHYT_RS11555 -4.8 -2.8 allantoinase compare
BPHYT_RS21495 -4.8 -1.0 ABC transporter compare
BPHYT_RS17890 -4.7 -1.8 shikimate kinase compare
BPHYT_RS02285 -4.7 -4.0 cell division protein compare
BPHYT_RS06070 -4.7 -10.3 cytochrome C compare
BPHYT_RS02640 -4.7 -9.3 cytochrome C oxidase compare
BPHYT_RS06545 -4.7 -6.7 acetolactate synthase compare
BPHYT_RS09515 -4.7 -2.8 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS21350 -4.7 -1.4 ADP-glucose pyrophosphorylase compare
BPHYT_RS06900 -4.6 -4.4 aspartate aminotransferase compare
BPHYT_RS01455 -4.6 -1.0 peptide deformylase compare
BPHYT_RS04965 -4.6 -7.9 ATP-binding protein compare
BPHYT_RS04595 -4.6 -1.7 cytoplasmic protein compare
BPHYT_RS03640 -4.5 -2.7 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS18965 -4.4 -1.3 chemotaxis protein CheY compare
BPHYT_RS01660 -4.4 -1.6 hypothetical protein compare
BPHYT_RS09500 -4.4 -5.2 glucose-6-phosphate isomerase compare
BPHYT_RS33655 -4.3 -4.1 MarR family transcriptional regulator compare
BPHYT_RS36385 -4.3 -0.9 TetR family transcriptional regulator compare
BPHYT_RS11325 -4.3 -5.8 voltage-gated chloride channel protein ClcB compare
BPHYT_RS17405 -4.3 -0.9 indole-3-glycerol phosphate synthase compare
BPHYT_RS16835 -4.2 -4.6 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS22580 -4.2 -3.3 transcriptional regulator compare
BPHYT_RS02685 -4.2 -6.4 cytochrome C oxidase subunit I compare
BPHYT_RS16255 -4.2 -2.9 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS28830 -4.2 -0.9 LysR family transcriptional regulator compare
BPHYT_RS06405 -4.1 -4.4 phosphoribosylamine--glycine ligase compare
BPHYT_RS29520 -4.1 -0.9 hypothetical protein compare
BPHYT_RS17400 -4.1 -3.3 anthranilate phosphoribosyltransferase compare
BPHYT_RS17700 -4.0 -2.8 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS08975 -4.0 -3.8 molybdenum cofactor biosynthesis protein MoaE compare
BPHYT_RS20095 -4.0 -0.9 transcriptional regulator compare
BPHYT_RS12615 -4.0 -0.9 dihydrodipicolinate synthase compare
BPHYT_RS03410 -4.0 -1.8 queuine tRNA-ribosyltransferase compare
BPHYT_RS09105 -4.0 -4.2 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS12055 -4.0 -13.3 phosphoenolpyruvate synthase compare
BPHYT_RS14500 -4.0 -1.9 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS33125 -3.9 -2.0 hypothetical protein compare
BPHYT_RS36055 -3.9 -2.2 hypothetical protein compare
BPHYT_RS17075 -3.9 -3.2 ABC transporter permease compare
BPHYT_RS13595 -3.9 -3.6 IclR family transcriptional regulator compare
BPHYT_RS33765 -3.9 -0.8 membrane protein compare
BPHYT_RS04730 -3.9 -3.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS04725 -3.9 -5.1 sulfite reductase compare
BPHYT_RS08235 -3.9 -0.8 nucleoprotein, Hfg, host factor I compare
BPHYT_RS22865 -3.8 -2.7 ATPase compare
BPHYT_RS08245 -3.8 -5.7 anti-sigma factor compare
BPHYT_RS04340 -3.8 -3.7 hypothetical protein compare
BPHYT_RS25780 -3.7 -0.8 DeoR faimly transcriptional regulator compare
BPHYT_RS02590 -3.7 -3.2 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS09160 -3.7 -4.0 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS17095 -3.7 -3.3 proline--tRNA ligase compare
BPHYT_RS14855 -3.7 -1.3 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS33905 -3.6 -1.1 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS06610 -3.6 -1.1 triosephosphate isomerase compare
BPHYT_RS14715 -3.6 -6.2 molybdenum cofactor biosynthesis protein MogA compare
BPHYT_RS32880 -3.5 -1.1 alanine acetyltransferase compare
BPHYT_RS06975 -3.5 -1.5 glutamate racemase compare
BPHYT_RS33580 -3.5 -4.7 geranyltranstransferase compare
BPHYT_RS17765 -3.5 -3.5 toluene ABC transporter ATP-binding protein compare
BPHYT_RS03655 -3.5 -1.0 membrane protein compare
BPHYT_RS25205 -3.4 -7.4 electron transfer flavoprotein subunit alpha compare
BPHYT_RS13645 -3.4 -17.3 threonine--tRNA ligase compare
BPHYT_RS18610 -3.4 -2.8 lytic transglycosylase compare
BPHYT_RS12815 -3.4 -5.1 IclR family transcriptional regulator compare
BPHYT_RS06190 -3.4 -1.4 heptosyltransferase compare
BPHYT_RS12840 -3.3 -3.7 pyruvate dehydrogenase compare
BPHYT_RS02975 -3.3 -1.9 membrane protein compare
BPHYT_RS02540 -3.3 -1.4 hypothetical protein compare
BPHYT_RS16180 -3.3 -0.7 TetR family transcriptional regulator compare
BPHYT_RS22265 -3.3 -1.0 hypothetical protein compare
BPHYT_RS33845 -3.3 -2.2 bacteriocin production protein compare
BPHYT_RS06045 -3.2 -6.1 transaldolase compare
BPHYT_RS29720 -3.2 -1.0 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
BPHYT_RS05395 -3.2 -1.2 hypothetical protein compare
BPHYT_RS03570 -3.2 -6.3 heat-inducible transcription repressor HrcA compare
BPHYT_RS12985 -3.2 -1.3 amino acid acetyltransferase compare
BPHYT_RS14060 -3.1 -1.2 peptidase M23 compare
BPHYT_RS08960 -3.1 -1.1 threonine synthase compare
BPHYT_RS13245 -3.1 -2.9 hypothetical protein compare
BPHYT_RS19005 -3.1 -5.9 chemotaxis protein CheY compare
BPHYT_RS18995 -3.1 -3.9 purine-binding chemotaxis protein compare
BPHYT_RS16710 -3.1 -0.7 LysR family transcriptional regulator compare
BPHYT_RS26685 -3.1 -0.9 precorrin-8X methylmutase compare
BPHYT_RS08135 -3.1 -1.3 hypothetical protein compare
BPHYT_RS03520 -3.1 -1.6 ATP--cobalamin adenosyltransferase compare
BPHYT_RS15620 -3.1 -3.1 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS16840 -3.1 -2.0 transketolase compare
BPHYT_RS25095 -3.1 -2.0 AraC family transcriptional regulator compare
BPHYT_RS02575 -3.1 -9.9 phosphoenolpyruvate-protein phosphotransferase compare
BPHYT_RS32210 -3.0 -1.1 hypothetical protein compare
BPHYT_RS03725 -3.0 -1.1 serine hydroxymethyltransferase compare
BPHYT_RS06530 -3.0 -0.9 membrane protein compare
BPHYT_RS22730 -3.0 -2.7 serine/threonine kinase compare
BPHYT_RS05040 -3.0 -4.1 sugar ABC transporter ATPase compare
BPHYT_RS19085 -3.0 -6.4 flagellin compare
BPHYT_RS23910 -3.0 -1.7 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS03645 -3.0 -2.0 tRNA dimethylallyltransferase compare
BPHYT_RS06685 -3.0 -1.2 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS12150 -3.0 -11.2 PII uridylyl-transferase compare
BPHYT_RS18970 -3.0 -12.2 chemotaxis protein compare
BPHYT_RS14125 -2.9 -2.0 transcriptional regulator compare
BPHYT_RS04370 -2.9 -0.6 glycosyl transferase compare
BPHYT_RS03400 -2.9 -0.9 ATP-dependent DNA helicase RecG compare
BPHYT_RS16675 -2.9 -1.4 dihydroorotase compare
BPHYT_RS03685 -2.9 -2.7 Tol system periplasmic component YbgF compare
BPHYT_RS36470 -2.9 -1.6 hypothetical protein compare
BPHYT_RS14320 -2.9 -5.9 UvrABC system protein C compare
BPHYT_RS09655 -2.9 -4.9 mechanosensitive ion channel protein MscS compare
BPHYT_RS36220 -2.9 -1.1 hypothetical protein compare
BPHYT_RS01590 -2.9 -6.7 methionine biosynthesis protein MetW compare
BPHYT_RS25220 -2.9 -2.8 ferredoxin oxidoreductase compare
BPHYT_RS11235 -2.9 -0.9 hypothetical protein compare
BPHYT_RS04720 -2.8 -3.4 transcriptional regulator compare
BPHYT_RS24630 -2.8 -1.6 (2Fe-2S)-binding protein compare
BPHYT_RS19000 -2.8 -6.4 chemotaxis protein CheA compare
BPHYT_RS14490 -2.8 -7.4 molybdenum cofactor biosynthesis protein MoeA compare
BPHYT_RS08565 -2.8 -0.8 dihydroorotate dehydrogenase compare
BPHYT_RS22930 -2.8 -0.8 type II secretion system protein compare
BPHYT_RS16320 -2.8 -2.2 cyclic pyranopterin monophosphate synthase accessory protein compare
BPHYT_RS18900 -2.8 -10.5 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS16075 -2.8 -11.7 D-arabinitol 4-dehydrogenase compare
BPHYT_RS04385 -2.8 -1.5 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS01485 -2.8 -0.6 histidine kinase compare
BPHYT_RS26535 -2.7 -4.1 GntR family transcriptional regulator compare
BPHYT_RS34490 -2.7 -0.8 hypothetical protein compare
BPHYT_RS11540 -2.7 -2.1 ureidoglycolate hydrolase compare
BPHYT_RS17520 -2.7 -4.3 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS03730 -2.7 -2.1 transcriptional repressor NrdR compare
BPHYT_RS03470 -2.7 -3.8 LysR family transcriptional regulator compare
BPHYT_RS04740 -2.6 -4.9 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS02135 -2.6 -1.5 glyoxylate reductase compare
BPHYT_RS16435 -2.6 -10.3 alcohol dehydrogenase compare
BPHYT_RS09905 -2.6 -1.1 hypothetical protein compare
BPHYT_RS02865 -2.6 -1.6 hypothetical protein compare
BPHYT_RS02610 -2.6 -3.1 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare


Specific Phenotypes

For 25 genes in this experiment

For in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days in Burkholderia phytofirmans PsJN

For in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days across organisms