Experiment set18IT031 for Bacteroides thetaiotaomicron VPI-5482

Post-colonization (Day 10) - Cage4;Mouse5

Group: mouse_post_colonization
Media:
Culturing: Btheta_ML6a
By: Deanna Pepin on 2/1/21

Specific Phenotypes

For 2 genes in this experiment

SEED Subsystems

Subsystem	#Specific
Cysteine Biosynthesis	1
High affinity phosphate transporter and control of PHO regulon	1
Phosphate metabolism	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Purine metabolism
• Selenoamino acid metabolism
• Sulfur metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
sulfate activation for sulfonation	2	2	1
assimilatory sulfate reduction III	3	1	1
assimilatory sulfate reduction II	3	1	1
sulfite oxidation III	3	1	1
assimilatory sulfate reduction I	4	2	1
assimilatory sulfate reduction IV	4	2	1
selenate reduction	5	2	1
dissimilatory sulfate reduction I (to hydrogen sufide))	5	1	1
superpathway of sulfur metabolism (Desulfocapsa sulfoexigens)	6	1	1
superpathway of thiosulfate metabolism (Desulfovibrio sulfodismutans)	6	1	1
superpathway of sulfate assimilation and cysteine biosynthesis	9	7	1
superpathway of sulfur amino acid biosynthesis (Saccharomyces cerevisiae)	10	4	1
superpathway of L-methionine biosynthesis (by sulfhydrylation)	12	8	1
superpathway of sulfide oxidation (phototrophic sulfur bacteria)	12	2	1
superpathway of seleno-compound metabolism	19	5	1