Experiment set18IT009 for Pseudomonas fluorescens SBW25-INTG

Compare to:

LB outgrowth control more dilute start

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS03995 +1.9 3.2 hypothetical protein compare
PFLU_RS16310 +1.3 2.1 hypothetical protein compare
PFLU_RS09720 +1.2 2.2 single-stranded DNA-binding protein compare
PFLU_RS27805 +1.2 2.8 sarcosine oxidase subunit gamma family protein compare
PFLU_RS08735 +1.1 2.0 histidine phosphatase family protein compare
PFLU_RS30790 +1.0 2.1 hypothetical protein compare
PFLU_RS13670 +1.0 2.8 (2Fe-2S)-binding protein compare
PFLU_RS31675 +1.0 2.0 hypothetical protein compare
PFLU_RS31840 +0.9 1.4 hypothetical protein compare
PFLU_RS19730 +0.9 2.8 glyoxylate/hydroxypyruvate reductase A compare
PFLU_RS08575 +0.9 2.6 hypothetical protein compare
PFLU_RS21690 +0.9 2.5 DNA-binding protein compare
PFLU_RS24980 +0.9 1.4 purine-binding chemotaxis protein CheW compare
PFLU_RS20960 +0.9 2.9 hypothetical protein compare
PFLU_RS27910 +0.9 1.3 helix-turn-helix transcriptional regulator compare
PFLU_RS16580 +0.8 1.9 hypothetical protein compare
PFLU_RS14195 +0.8 1.5 hypothetical protein compare
PFLU_RS20955 +0.8 1.3 DUF1028 domain-containing protein compare
PFLU_RS11380 +0.8 1.5 sarcosine oxidase subunit delta compare
PFLU_RS02860 +0.8 1.9 urease subunit beta compare
PFLU_RS23885 +0.8 1.8 transposase compare
PFLU_RS11055 +0.8 2.3 hypothetical protein compare
PFLU_RS12805 +0.7 2.7 RidA family protein compare
PFLU_RS17615 +0.7 1.2 DeoR/GlpR transcriptional regulator compare
PFLU_RS15970 +0.7 2.0 DUF861 domain-containing protein compare
PFLU_RS11885 +0.7 1.4 type II secretion system protein M compare
PFLU_RS30630 +0.7 1.2 hypothetical protein compare
PFLU_RS31215 +0.7 2.0 hypothetical protein compare
PFLU_RS14040 +0.7 2.8 phage tail protein compare
PFLU_RS18585 +0.7 1.5 high frequency lysogenization protein HflD compare
PFLU_RS00210 +0.7 1.3 OsmC family protein compare
PFLU_RS01875 +0.7 0.6 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS29360 +0.7 1.8 cytochrome c5 family protein compare
PFLU_RS17525 +0.7 1.6 NUDIX domain-containing protein compare
PFLU_RS18410 +0.7 1.9 response regulator compare
PFLU_RS19555 +0.7 1.2 histidine phosphatase family protein compare
PFLU_RS03075 +0.7 1.0 translation initiation factor Sui1 compare
PFLU_RS21215 +0.6 1.2 YheU family protein compare
PFLU_RS19640 +0.6 2.5 5-oxoprolinase subunit PxpA compare
PFLU_RS05630 +0.6 1.0 amino acid ABC transporter ATP-binding protein compare
PFLU_RS02515 +0.6 2.6 flagellar motor protein MotB compare
PFLU_RS21575 +0.6 1.6 pyrimidine/purine nucleoside phosphorylase compare
PFLU_RS16110 +0.6 2.5 benzaldehyde dehydrogenase compare
PFLU_RS20335 +0.6 1.2 hypothetical protein compare
PFLU_RS16775 +0.6 2.5 GNAT family N-acetyltransferase compare
PFLU_RS18120 +0.6 2.5 DeoR family transcriptional regulator compare
PFLU_RS21735 +0.6 4.6 flagellar hook-length control protein FliK compare
PFLU_RS21765 +0.6 3.7 flagellar assembly protein FliH compare
PFLU_RS19580 +0.6 1.6 helix-turn-helix transcriptional regulator compare
PFLU_RS15785 +0.6 1.1 type II secretion system protein GspH compare
PFLU_RS01860 +0.6 2.1 amino acid ABC transporter ATP-binding protein compare
PFLU_RS22400 +0.6 1.7 adenine phosphoribosyltransferase compare
PFLU_RS21660 +0.6 4.7 RNA polymerase sigma factor FliA compare
PFLU_RS21795 +0.6 5.2 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS17655 +0.6 2.5 putative natural product biosynthesis protein compare
PFLU_RS13640 +0.6 1.3 isochorismatase family protein compare
PFLU_RS21855 +0.6 3.8 flagellar basal-body rod protein FlgG compare
PFLU_RS15790 +0.5 1.9 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS31590 +0.5 0.5 hypothetical protein compare
PFLU_RS15245 +0.5 2.1 response regulator compare
PFLU_RS31690 +0.5 1.5 hypothetical protein compare
PFLU_RS21850 +0.5 4.6 flagellar basal body L-ring protein FlgH compare
PFLU_RS01480 +0.5 4.9 cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB compare
PFLU_RS21655 +0.5 2.8 response regulator compare
PFLU_RS12005 +0.5 2.4 helix-turn-helix domain-containing protein compare
PFLU_RS23195 +0.5 4.6 flagellar basal body P-ring formation protein FlgA compare
PFLU_RS21760 +0.5 4.4 flagellar protein export ATPase FliI compare
PFLU_RS20025 +0.5 1.5 amino acid ABC transporter ATP-binding protein compare
PFLU_RS13950 +0.5 1.1 hypothetical protein compare
PFLU_RS13035 +0.5 1.3 cobalamin biosynthesis protein CobW compare
PFLU_RS22070 +0.5 1.5 phosphoribosylglycinamide formyltransferase compare
PFLU_RS11720 +0.5 1.5 hypothetical protein compare
PFLU_RS21485 +0.5 2.3 response regulator compare
PFLU_RS21755 +0.5 3.7 flagella biosynthesis chaperone FliJ compare
PFLU_RS07355 +0.5 2.5 SDR family oxidoreductase compare
PFLU_RS03570 +0.5 1.2 hypothetical protein compare
PFLU_RS09460 +0.5 2.2 hypothetical protein compare
PFLU_RS19010 +0.5 1.6 sigma-70 family RNA polymerase sigma factor compare
PFLU_RS14110 +0.5 1.9 hypothetical protein compare
PFLU_RS11515 +0.5 2.2 DUF1330 domain-containing protein compare
PFLU_RS23180 +0.5 3.7 flagellar basal body rod protein FlgB compare
PFLU_RS25115 +0.5 1.8 cytochrome c family protein compare
PFLU_RS21845 +0.5 3.5 flagellar basal body P-ring protein FlgI compare
PFLU_RS21860 +0.5 3.1 flagellar basal body rod protein FlgF compare
PFLU_RS04975 +0.5 2.3 amino acid ABC transporter ATP-binding protein compare
PFLU_RS15240 +0.5 2.5 tetratricopeptide repeat protein compare
PFLU_RS17110 +0.5 1.7 DUF58 domain-containing protein compare
PFLU_RS05720 +0.5 3.8 OmpA family protein compare
PFLU_RS07960 +0.5 1.9 hypothetical protein compare
PFLU_RS07995 +0.5 2.4 aspartate aminotransferase family protein compare
PFLU_RS12430 +0.5 2.0 type II toxin-antitoxin system HicA family toxin compare
PFLU_RS24785 +0.5 3.4 outer membrane protein assembly factor BamB compare
PFLU_RS08370 +0.5 1.4 hypothetical protein compare
PFLU_RS11805 +0.5 1.8 DoxX family protein compare
PFLU_RS15010 +0.5 1.8 hypothetical protein compare
PFLU_RS22470 +0.5 0.9 hypothetical protein compare
PFLU_RS03025 +0.5 2.5 tRNA dihydrouridine synthase DusB compare
PFLU_RS06855 +0.5 1.0 helix-turn-helix transcriptional regulator compare
PFLU_RS25190 +0.5 1.2 hypothetical protein compare
PFLU_RS12755 +0.5 1.5 periplasmic heavy metal sensor compare
PFLU_RS21705 +0.5 3.0 flagellar biosynthesis protein FliQ compare
PFLU_RS09010 +0.5 2.6 dienelactone hydrolase family protein compare
PFLU_RS30030 +0.5 0.8 membrane protein compare
PFLU_RS16390 +0.5 0.8 DUF411 domain-containing protein compare
PFLU_RS27725 +0.5 2.5 ornithine cyclodeaminase compare
PFLU_RS23165 +0.5 4.2 flagellar hook protein FlgE compare
PFLU_RS12375 +0.5 1.8 hypothetical protein compare
PFLU_RS20715 +0.5 0.9 iron ABC transporter permease compare
PFLU_RS19215 +0.5 1.8 hypothetical protein compare
PFLU_RS05790 +0.5 1.7 hypothetical protein compare
PFLU_RS07695 +0.5 1.4 beta-N-acetylhexosaminidase compare
PFLU_RS09650 +0.4 2.4 FadR family transcriptional regulator compare
PFLU_RS16440 +0.4 1.7 acyl-CoA dehydrogenase compare
PFLU_RS18185 +0.4 1.8 SDR family oxidoreductase compare
PFLU_RS13025 +0.4 2.0 CbtA family protein compare
PFLU_RS16660 +0.4 1.7 hypothetical protein compare
PFLU_RS30890 +0.4 1.9 hypothetical protein compare
PFLU_RS15045 +0.4 1.8 glycosyl hydrolase compare
PFLU_RS04785 +0.4 2.0 ABC transporter substrate-binding protein compare
PFLU_RS21835 +0.4 3.8 flagellar hook-associated protein FlgK compare
PFLU_RS02215 +0.4 0.9 hypothetical protein compare
PFLU_RS08615 +0.4 1.2 YgdI/YgdR family lipoprotein compare
PFLU_RS31315 +0.4 1.4 hypothetical protein compare
PFLU_RS27420 +0.4 1.4 response regulator transcription factor compare
PFLU_RS25335 +0.4 2.7 sulfate transporter CysZ compare
PFLU_RS30340 +0.4 1.5 hypothetical protein compare
PFLU_RS10265 +0.4 2.2 LysE family translocator compare
PFLU_RS01020 +0.4 1.0 LysR family transcriptional regulator compare
PFLU_RS18050 +0.4 1.9 LysR family transcriptional regulator compare
PFLU_RS01490 +0.4 4.0 cellulose biosynthesis protein BcsC compare
PFLU_RS17195 +0.4 1.2 acyl dehydratase compare
PFLU_RS18130 +0.4 2.0 ABC transporter permease subunit compare
PFLU_RS31780 +0.4 1.1 hypothetical protein compare
PFLU_RS19600 +0.4 1.7 ATP-binding cassette domain-containing protein compare
PFLU_RS16845 +0.4 1.6 helix-turn-helix transcriptional regulator compare
PFLU_RS21240 +0.4 0.8 hypothetical protein compare
PFLU_RS23570 +0.4 1.9 pyridoxamine 5'-phosphate oxidase family protein compare
PFLU_RS28715 +0.4 2.1 DUF523 domain-containing protein compare
PFLU_RS11755 +0.4 2.5 GNAT family N-acetyltransferase compare
PFLU_RS26075 +0.4 1.9 IS66 family insertion sequence hypothetical protein compare
PFLU_RS21035 +0.4 2.1 SDR family oxidoreductase compare
PFLU_RS16060 +0.4 2.3 acyl-CoA dehydrogenase compare
PFLU_RS18045 +0.4 1.9 AraC family transcriptional regulator compare
PFLU_RS11285 +0.4 1.2 hypothetical protein compare
PFLU_RS13315 +0.4 1.2 class I SAM-dependent methyltransferase compare
PFLU_RS21700 +0.4 2.3 flagellar type III secretion system protein FliR compare
PFLU_RS21830 +0.4 3.8 flagellar hook-associated protein 3 compare
PFLU_RS10435 +0.4 2.8 response regulator transcription factor compare
PFLU_RS21675 +0.4 3.6 flagellar biosynthesis protein FlhA compare
PFLU_RS09560 +0.4 2.4 NAD-dependent succinate-semialdehyde dehydrogenase compare
PFLU_RS14135 +0.4 1.5 hypothetical protein compare
PFLU_RS12825 +0.4 1.1 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS05910 +0.4 0.9 response regulator transcription factor compare
PFLU_RS10765 +0.4 3.0 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS10190 +0.4 1.8 GNAT family N-acetyltransferase compare
PFLU_RS19940 +0.4 1.7 type II secretion system ATPase GspE compare
PFLU_RS12545 +0.4 2.0 LysR family transcriptional regulator compare
PFLU_RS31440 +0.4 0.8 hypothetical protein compare
PFLU_RS19550 +0.4 0.5 ABC transporter ATP-binding protein compare
PFLU_RS30985 +0.4 0.9 hypothetical protein compare
PFLU_RS11990 +0.4 1.1 hypothetical protein compare
PFLU_RS21695 +0.4 2.4 flagellar biosynthesis protein FlhB compare
PFLU_RS05585 +0.4 1.4 MtnX-like HAD-IB family phosphatase compare
PFLU_RS19650 +0.4 2.3 biotin-dependent carboxyltransferase family protein compare
PFLU_RS05655 +0.4 1.1 DeoR/GlpR family transcriptional regulator compare
PFLU_RS19480 +0.4 1.9 amidase compare
PFLU_RS01475 +0.4 3.6 UDP-forming cellulose synthase catalytic subunit compare
PFLU_RS18925 +0.4 2.5 GNAT family N-acetyltransferase compare
PFLU_RS18125 +0.4 1.2 ABC transporter ATP-binding protein compare
PFLU_RS30590 +0.4 0.5 hypothetical protein compare
PFLU_RS00190 +0.4 0.9 DUF883 domain-containing protein compare
PFLU_RS04075 +0.4 0.6 hypothetical protein compare
PFLU_RS14065 +0.4 2.0 phage minor tail protein L compare
PFLU_RS18430 +0.4 2.1 TlpA family protein disulfide reductase compare
PFLU_RS11645 +0.4 1.6 SMP-30/gluconolactonase/LRE family protein compare
PFLU_RS09100 +0.4 1.8 HAMP domain-containing protein compare
PFLU_RS26925 +0.4 1.2 hypothetical protein compare
PFLU_RS16935 +0.4 1.1 CoA ester lyase compare
PFLU_RS18080 +0.4 1.0 helix-turn-helix transcriptional regulator compare
PFLU_RS08295 +0.4 1.7 methyl-accepting chemotaxis protein compare
PFLU_RS12175 +0.4 0.5 methyl-accepting chemotaxis protein compare
PFLU_RS29705 +0.4 2.0 rubredoxin compare
PFLU_RS14760 +0.4 1.1 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS08580 +0.4 1.7 membrane protein compare
PFLU_RS21810 +0.4 3.5 flagellar filament capping protein FliD compare
PFLU_RS14020 +0.4 0.9 hypothetical protein compare
PFLU_RS02000 +0.4 3.5 penicillin-binding protein 1A compare
PFLU_RS17030 +0.4 1.6 cysteine hydrolase compare
PFLU_RS21725 +0.4 2.6 flagellar motor switch protein FliM compare
PFLU_RS28845 +0.4 1.5 peroxiredoxin compare
PFLU_RS29645 +0.4 2.0 type VI secretion system baseplate subunit TssE compare
PFLU_RS01150 +0.4 2.0 efflux RND transporter periplasmic adaptor subunit compare
PFLU_RS21820 +0.4 2.8 flagellin compare
PFLU_RS19015 +0.4 2.0 anti-sigma factor compare
PFLU_RS19275 +0.4 1.3 copper homeostasis membrane protein CopD compare
PFLU_RS12775 +0.4 1.5 TerC family protein compare
PFLU_RS15600 +0.4 1.2 ketoacyl-ACP synthase III compare
PFLU_RS00770 +0.4 1.8 hypothetical protein compare
PFLU_RS31535 +0.4 0.7 hypothetical protein compare
PFLU_RS13775 +0.4 1.4 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For lb outgrowth control more dilute start Kanamycin sulfate in Pseudomonas fluorescens SBW25-INTG

For lb outgrowth control more dilute start Kanamycin sulfate across organisms