Experiment set17S444 for Ralstonia solanacearum GMI1000

Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

Group: in planta
Media: + Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Culturing: RalstoniaGMI1000_ML2
By: Nathalie Aoun on 5/2/2024_B

Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct in Ralstonia solanacearum GMI1000

For in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct across organisms

SEED Subsystems

Subsystem	#Specific
Arginine and Ornithine Degradation	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Arginine and proline metabolism
• Urea cycle and metabolism of amino groups
• Methionine metabolism
• Lysine biosynthesis
• Lysine degradation
• Aminophosphonate metabolism
• Nucleotide sugars metabolism
• Caprolactam degradation

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
putrescine degradation I	2	2	1
L-lysine degradation X	6	4	1
L-lysine degradation I	7	3	1
superpathway of ornithine degradation	8	4	1
superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation	11	5	1
superpathway of L-arginine and L-ornithine degradation	13	7	1
superpathway of L-lysine degradation	43	9	1