Experiment set17IT084 for Desulfovibrio vulgaris Hildenborough JW710

Compare to:

Hydrogen/Acetate-Sulfite (90%atm/5mM-20mM)

200 most detrimental genes:

  gene name fitness t score description  
DVU1679 idi +1.6 5.4 isopentenyl-diphosphate delta-isomerase (TIGR) compare
DVU0899 +1.5 3.4 conserved hypothetical protein (TIGR) compare
DVU1061 +1.4 1.6 glycosyl transferase, group 1 family protein (TIGR) compare
DVU0787 +1.3 4.7 hypothetical protein (TIGR) compare
DVU0001 dnaA-1 +1.2 6.4 chromosomal replication initiator protein DnaA (TIGR) compare
DVU1078 +1.1 9.4 R3H domain protein (TIGR) compare
DVU2644 +1.0 4.0 transcriptional regulator, GntR family (TIGR) compare
DVU1690 +1.0 2.7 transcriptional regulator, TetR family (TIGR) compare
DVU0987 +1.0 1.5 heavy metal-binding domain protein (TIGR) compare
DVU2341 +1.0 6.2 amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) compare
DVU2454 +1.0 0.9 hypothetical protein (TIGR) compare
DVU2343 glnQ +0.9 6.4 amino acid ABC transporter, ATP-binding protein (TIGR) compare
DVU1726 +0.8 1.9 hypothetical protein (TIGR) compare
DVU1251 +0.8 1.8 hypothetical protein (TIGR) compare
DVU0669 +0.8 2.1 hypothetical protein (TIGR) compare
DVU3392 glnA +0.7 5.7 glutamine synthetase, type I (TIGR) compare
DVU2342 +0.7 4.6 amino acid ABC transporter, periplasmic amino acid-binding protein (TIGR) compare
DVU1682 +0.7 3.0 GAF domain protein (TIGR) compare
DORF26446 +0.7 1.3 no description compare
DVU1918 hysA +0.7 4.9 periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing (TIGR) compare
DVU1531 +0.7 4.7 methyltransferase, putative (TIGR) compare
DORF11799 +0.6 1.1 no description compare
DVU1577 hslV +0.6 1.9 ATP-dependent protease hslV (TIGR) compare
DVU2340 +0.6 2.5 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) compare
DVU3177 +0.6 3.4 hypothetical protein (TIGR) compare
DVU1944 oorD +0.6 2.1 pyruvate ferredoxin oxidoreductase, iron-sulfur binding subunit, putative (TIGR) compare
DVU2206 +0.6 3.5 conserved hypothetical protein (TIGR) compare
DVU3022 +0.6 0.4 sensory box histidine kinase/response regulator (TIGR) compare
DVU0657 +0.6 1.4 heat shock protein, Hsp20 family (TIGR) compare
DVU1917 hysB +0.6 3.0 periplasmic [NiFeSe] hydrogenase, small subunit (TIGR) compare
DORF29743 +0.6 1.8 no description compare
DVU1426 gcvH +0.5 2.0 glycine cleavage system H protein (TIGR) compare
DVU1919 +0.5 3.9 hydrogenase expression/formation protein, putative (TIGR) compare
DVU1794 +0.5 2.5 hypothetical protein (TIGR) compare
DVU2915 +0.5 2.1 hypothetical protein (TIGR) compare
DVU1796 +0.5 1.3 hypothetical protein (TIGR) compare
DORF11409 +0.5 4.0 SEED: FIG00606517: hypothetical protein compare
DVU1916 +0.5 1.6 hypothetical protein (TIGR) compare
DVU1076 +0.5 1.8 conserved hypothetical protein TIGR00278 (TIGR) compare
DVU0859 +0.5 3.7 hypothetical protein (TIGR) compare
DVU0581 +0.5 3.1 response regulator/anti-anti-sigma factor (TIGR) compare
DVU1951 +0.5 3.0 indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative (TIGR) compare
DVU0475 +0.5 2.1 membrane protein, putative, truncation (TIGR) compare
DVU0583 +0.5 3.4 lipoprotein, putative (TIGR) compare
DVU2046 +0.5 0.5 hypothetical protein (TIGR) compare
DVU1938 +0.5 1.4 hypothetical protein (TIGR) compare
DVU2577 +0.5 3.4 DNA-binding response regulator, LuxR family (TIGR) compare
DVU0035 +0.5 1.7 hypothetical protein (TIGR) compare
DVU0586 +0.5 2.1 hypothetical protein (TIGR) compare
DVU2203 +0.5 0.9 endoribonuclease, L-PSP family (TIGR) compare
DVU1785 +0.4 2.3 membrane protein, MarC family (TIGR) compare
DVU0034 +0.4 2.1 DSBA-like thioredoxin domain protein (TIGR) compare
DVU2582 +0.4 2.3 transcriptional regulator, TetR family (TIGR) compare
DVU0484 +0.4 2.1 ABC transporter, ATP-binding protein (TIGR) compare
DVU1337 lon +0.4 3.2 ATP-dependent protease La (TIGR) compare
DVU2650 +0.4 1.3 hypothetical protein (TIGR) compare
DVU3187 hup-4 +0.4 1.7 DNA-binding protein HU (TIGR) compare
DVU0764 hup-2 +0.4 1.9 DNA-binding protein HU (TIGR) compare
DVU0311 +0.4 3.4 flagellar assembly protein FliH, putative (TIGR) compare
DVUA0080 +0.4 0.3 glycosyl transferase, group 2 family protein (TIGR) compare
DVU0941 pep* +0.4 3.0 metalloprotease, iron-related (Dmitry Rodionov) compare
DVU0315 flgC +0.4 3.5 flagellar basal-body rod protein FlgC (TIGR) compare
DVU1950 +0.4 2.3 indolepyruvate ferredoxin oxidoreductase, beta subunit, putative (TIGR) compare
DVU0582 +0.4 3.3 sensory box histidine kinase (TIGR) compare
DVU0043 fliQ +0.4 3.6 flagellar biosynthetic protein FliQ (TIGR) compare
DVU2865 +0.4 0.6 lipoprotein, putative (TIGR) compare
DVU0362 +0.4 3.0 conserved hypothetical protein (TIGR) compare
DVU0280 wbaZ-2 +0.4 1.0 glycosyl transferase, group 1 family protein (TIGR) compare
DVU1409 +0.4 2.3 hypothetical protein (TIGR) compare
DVU1393 +0.4 1.4 hypothetical protein (TIGR) compare
DVU1900 +0.4 2.2 conserved hypothetical protein (TIGR) compare
DORF12455 +0.4 1.8 SEED: helix-turn-helix protein, CopG family compare
DVU_tRNA-Arg-1 tRNA-Arg +0.4 0.6 tRNA with anticodon ACG for Arg (VIMSS-AUTO) compare
DVU1247 +0.4 1.4 hypothetical protein (TIGR) compare
DVU0747 cysA +0.4 1.8 ABC transporter, ATP-binding protein (TIGR) compare
DVU2284 +0.4 2.5 hypothetical protein (TIGR) compare
DVU0313 fliF +0.4 3.1 flagellar M-ring protein FliF (TIGR) compare
DVU1646 arsC +0.4 1.8 arsenate reductase (TIGR) compare
DVU0250 +0.4 1.4 hypothetical protein (TIGR) compare
DVU1389 +0.4 1.7 hypothetical protein (TIGR) compare
DORF28817 +0.4 1.4 no description compare
DORF39640 +0.4 2.2 SEED: Flp pilus assembly protein, pilin Flp compare
DORF14945 +0.3 1.4 no description compare
DVU0995 +0.3 1.4 ThiJ/PfpI family protein (TIGR) compare
DVU2045 +0.3 1.9 hypothetical protein (TIGR) compare
DVU2389 tolR +0.3 0.9 biopolymer transport protein, ExbD/TolR family (TIGR) compare
DVU1133 +0.3 1.5 hypothetical protein (TIGR) compare
DVU1446 +0.3 2.0 heptosyltransferase family protein (TIGR) compare
DVU1589 +0.3 1.9 hypothetical protein (TIGR) compare
DVU1666 efp +0.3 1.9 translation elongation factor P (TIGR) compare
DORF8192 +0.3 1.7 SEED: FIG00606834: hypothetical protein compare
DVU1449 +0.3 2.4 anti-anti-sigma factor, putative (TIGR) compare
DVU0886 +0.3 1.2 thioesterase family protein (TIGR) compare
DVUA0001 +0.3 0.6 hypothetical protein (TIGR) compare
DVU2362 thiE-2 +0.3 0.7 thiamine-phosphate pyrophosphorylase (TIGR) compare
DVU3360 parB +0.3 2.4 ParB family protein (TIGR) compare
DVU1629 yfiA +0.3 1.3 ribosomal subunit interface protein (TIGR) compare
DVU0689 rnhA +0.3 0.7 ribonuclease HI (TIGR) compare
DVU0912 +0.3 1.1 conserved domain protein (TIGR) compare
DVU1770 hydB +0.3 1.9 periplasmic [Fe] hydrogenase, small subunit (TIGR) compare
DVU2963 +0.3 1.4 response regulator (TIGR) compare
DVUA0029 +0.3 1.4 hypothetical protein (TIGR) compare
DVU0864 +0.3 1.3 glycoprotease family protein, putative (TIGR) compare
DORF38058 +0.3 0.5 SEED: FIG00604017: hypothetical protein compare
DVU0227 +0.3 1.3 conserved hypothetical protein (TIGR) compare
DVU3223 aspB +0.3 2.4 aspartate aminotransferase (TIGR) compare
DVU2180 +0.3 1.0 hypothetical protein (TIGR) compare
DVU2247 ahpC +0.3 1.6 alkyl hydroperoxide reductase C (Dmitry Rodionov) compare
DVU0044 fliP +0.3 1.5 flagellar biosynthetic protein fliP (TIGR) compare
DVU3225 +0.3 1.6 hypothetical protein (TIGR) compare
DVU3234 +0.3 1.7 flagellar biosynthetic protein FliR (TIGR) compare
DVU1728 +0.3 0.5 conserved hypothetical protein (TIGR) compare
DVU3272 +0.3 1.3 TPR domain protein (TIGR) compare
DVU2647 +0.3 1.8 endoribonuclease, L-PSP family (TIGR) compare
DVU0451 +0.3 2.6 chloride channel family protein (TIGR) compare
DVU0512 flgF +0.3 2.0 flagellar basal-body rod protein, putative (TIGR) compare
DVU1841 fbp +0.3 0.2 fructose-1,6-bisphosphatase (TIGR) compare
DVU2048 +0.3 0.2 hypothetical protein (TIGR) compare
DVU0509 +0.3 0.3 conserved hypothetical protein (TIGR) compare
DORF24435 +0.3 1.2 SEED: Sll1863 protein compare
DVU2578 +0.3 2.4 response regulator (TIGR) compare
DVU0359 +0.3 1.3 HesB-like domain (TIGR) compare
DVU2990 moeA +0.3 2.5 molybdopterin biosynthesis MoeA protein (TIGR) compare
DVU1604 +0.3 1.8 hypothetical protein (TIGR) compare
DVU2550 +0.3 0.5 hypothetical protein (TIGR) compare
DVU1371 +0.3 1.5 HAD-superfamily hydrolase, subfamily IA (TIGR) compare
DVU2117 +0.3 1.8 membrane protein, putative (TIGR) compare
DVU2677 +0.3 2.2 sensor histidine kinase/response regulator (TIGR) compare
DVU1045 +0.3 1.6 hypothetical protein (TIGR) compare
DVU3274 +0.3 1.2 hypothetical protein (TIGR) compare
DVU2867 +0.3 0.5 holin (TIGR) compare
DVU1767 +0.3 1.4 radical SAM domain protein (TIGR) compare
DVU0307 +0.3 2.0 flagella basal body rod domain protein (TIGR) compare
DVU3260 +0.3 0.9 hypothetical protein (TIGR) compare
DVU2220 +0.3 0.8 conserved hypothetical protein (TIGR) compare
DVU0910 fliM +0.3 1.6 flagellar motor switch protein FliM (TIGR) compare
DVU1387 +0.3 1.5 conserved hypothetical protein (TIGR) compare
DVU0452 +0.3 2.0 hypothetical protein (TIGR) compare
DVU0497 +0.3 1.9 hypothetical protein (TIGR) compare
DVU0792 +0.3 1.6 conserved domain protein (TIGR) compare
DVU1441 flaB1 +0.3 1.5 flagellin (TIGR) compare
DVU2548 acpD +0.3 1.9 acyl carrier protein phosphodiesterase (TIGR) compare
DVU1600 +0.3 1.7 adenylate cyclase (TIGR) compare
DVU1418 hydH +0.3 2.1 sensory box histidine kinase (TIGR) compare
DVU0514 +0.3 1.6 FlgA family protein (TIGR) compare
DVU0655 +0.3 1.6 PHP domain protein (TIGR) compare
DVU2391 +0.3 0.3 hypothetical protein (TIGR) compare
DVU2313 pgl +0.3 1.1 6-phosphogluconolactonase (TIGR) compare
DVU2742 livM +0.3 2.0 high-affinity branched chain amino acid ABC transporter, permease protein (TIGR) compare
DVU0515 flgH +0.3 1.7 flagellar L-ring protein FlgH (TIGR) compare
DVU3363 sun +0.3 2.2 sun protein (TIGR) compare
DVU2112 +0.3 1.9 hypothetical protein (TIGR) compare
DVU0610 +0.3 2.0 conserved hypothetical protein (TIGR) compare
DVU2802 +0.3 1.5 transcriptional regulator, GntR family (TIGR) compare
DVU2351 +0.3 1.1 hypothetical protein (TIGR) compare
DVU2355 trmH +0.3 1.9 tRNA (guanosine-2-O-)-methyltransferase (TIGR) compare
DORF11999 +0.3 0.9 SEED: FIG00606676: hypothetical protein compare
DVU0312 fliG +0.3 1.9 flagellar motor switch protein FliG (TIGR) compare
DVU0165 oppF +0.2 1.5 oligopeptide/dipeptide ABC transporter, ATP-binding protein (TIGR) compare
DVU2517 +0.2 1.8 conserved hypothetical protein (TIGR) compare
DVU0251 +0.2 1.6 membrane protein, putative (TIGR) compare
DORF10446 +0.2 1.7 SEED: FIG00604570: hypothetical protein compare
DVU2620 +0.2 1.9 conserved hypothetical protein (TIGR) compare
DVU0078 +0.2 1.6 conserved hypothetical protein (TIGR) compare
DVU0646 cobI +0.2 1.3 precorrin-2 C20-methyltransferase (TIGR) compare
DVU1255 +0.2 0.8 Sua5/YciO/YrdC/YwlC family protein (TIGR) compare
DVUA0141 +0.2 1.4 hypothetical protein (TIGR) compare
DVU2609 +0.2 1.5 chemotaxis MotB protein, putative (TIGR) compare
DVU2200 +0.2 0.4 hypothetical protein (TIGR) compare
DVU1384 pyrR +0.2 1.0 pyrimidine operon regulatory protein (TIGR) compare
DVU2956 flrA +0.2 0.5 sigma-54 dependent transcriptional regulator (TIGR) compare
DVU0260 mtrA +0.2 1.0 response regulator (TIGR) compare
DVU2547 +0.2 1.4 transcriptional regulator, putative (TIGR) compare
DVU1851 +0.2 1.4 peptidase, M23/M37 family (TIGR) compare
DVU2676 +0.2 1.3 hypothetical protein (TIGR) compare
DVU1458 +0.2 1.7 chemotaxis protein CheZ, putative (TIGR) compare
DVU1748 +0.2 0.2 conserved hypothetical protein (TIGR) compare
DVU1727 +0.2 0.8 hypothetical protein (TIGR) compare
DVU3243 dnaJ +0.2 1.1 dnaJ protein (TIGR) compare
DVU2291 +0.2 0.4 carbon monoxide-induced hydrogenase CooH, putative (TIGR) compare
DVU0314 fliE +0.2 1.3 flagellar basal body component FliE (TIGR) compare
DVU2605 +0.2 1.7 hypothetical protein (TIGR) compare
DVU2945 +0.2 1.1 conserved domain protein (TIGR) compare
DVU1921 hynB-1 +0.2 1.6 periplasmic [NiFe] hydrogenase, small subunit, isozyme 1 (TIGR) compare
DVU1126 +0.2 1.4 lipoprotein, putative (TIGR) compare
DVU2285 +0.2 1.8 L-lactate permease family protein (TIGR) compare
DVU1034 +0.2 1.0 hypothetical protein (TIGR) compare
DVU1936 phnC +0.2 1.3 phosphonate ABC transporter, ATP-binding protein (TIGR) compare
DVU1067 +0.2 1.2 membrane protein, Bmp family (TIGR) compare
DVU3009 +0.2 1.7 radical SAM domain protein (TIGR) compare
DVU2173 +0.2 1.2 hypothetical protein (TIGR) compare
DVU2863 +0.2 0.3 hypothetical protein (TIGR) compare
DVU2305 +0.2 0.5 conserved hypothetical protein (TIGR) compare
DVU3312 +0.2 0.8 conserved hypothetical protein (TIGR) compare
DVU0299 +0.2 1.6 anaerobic ribonucleoside-triphosphate reductase, putative (TIGR) compare
DVU0386 glnH +0.2 1.5 amino acid ABC transporter, periplasmic amino acid-binding protein (TIGR) compare
DVU2847 +0.2 1.1 hypothetical protein (TIGR) compare
DVU3069 +0.2 1.7 conserved hypothetical protein TIGR00247 (TIGR) compare
DVU3377 dgkA +0.2 1.2 diacylglycerol kinase (TIGR) compare
DVU0518 +0.2 1.5 hypothetical protein (TIGR) compare


Specific Phenotypes

For 2 genes in this experiment

For respiratory growth H2 in Desulfovibrio vulgaris Hildenborough JW710

For respiratory growth H2 across organisms