Experiment set17IT077 for Bifidobacterium breve UCC2003

Compare to:

mouse 3; day 1; diet=StandardDiet; sample=FecalPellet

200 most important genes:

  gene name fitness t score description  
BBR_RS12910 -7.3 -17.1 galactokinase compare
BBR_RS16300 -7.3 -5.1 pyridoxamine 5'-phosphate oxidase family protein compare
BBR_RS11540 -7.1 -4.0 DUF1727 domain-containing protein compare
BBR_RS16540 -7.0 -4.9 XRE family transcriptional regulator compare
BBR_RS20200 -6.9 -31.7 alpha-galactosidase compare
BBR_RS10285 -6.6 -2.9 membrane protein compare
BBR_RS10255 -6.2 -3.6 chromosomal replication initiator protein DnaA compare
BBR_RS17455 -6.1 -10.2 DNA-binding response regulator compare
BBR_RS13380 -6.0 -9.2 amidophosphoribosyltransferase compare
BBR_RS17775 -6.0 -7.2 LacI family DNA-binding transcriptional regulator compare
BBR_RS13375 -5.8 -5.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BBR_RS12605 -5.4 -3.7 glycosyltransferase family 2 protein compare
BBR_RS13450 -5.3 -3.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS15080 -5.3 -3.5 chorismate synthase compare
BBR_RS19355 -5.3 -2.3 tRNA-Gly compare
BBR_RS20195 -5.2 -20.6 ROK family transcriptional regulator compare
BBR_RS10755 -5.1 -3.5 adenylosuccinate synthase compare
BBR_RS13705 -5.0 -8.3 Conserved hypothetical membrane spanning protein, contains a vitamin K epoxide reductase domain compare
BBR_RS15085 -5.0 -2.2 3-dehydroquinate synthase compare
BBR_RS14230 -5.0 -3.5 HAMP domain-containing histidine kinase compare
BBR_RS15520 -5.0 -3.5 shikimate 5-dehydrogenase compare
BBR_RS10720 -4.9 -23.1 PDZ domain-containing protein compare
BBR_RS12500 -4.8 -1.2 sugar ABC transporter permease compare
BBR_RS12235 -4.8 -1.2 hypothetical protein compare
BBR_RS10580 -4.8 -4.3 septation inhibitor protein compare
BBR_RS18595 -4.7 -17.5 1,4-dihydroxy-2-naphthoate octaprenyltransferase compare
BBR_RS18565 -4.7 -2.1 CHAP domain-containing protein compare
BBR_RS13445 -4.6 -18.1 phosphoribosylformylglycinamidine synthase compare
BBR_RS17640 -4.6 -2.8 DNA-directed RNA polymerase subunit omega compare
BBR_RS16490 -4.4 -4.3 polyprenyl synthase compare
BBR_RS19905 -4.4 -1.1 methionine--tRNA ligase compare
BBR_RS16750 -4.4 -3.0 ParA family protein compare
BBR_RS12045 -4.3 -4.9 hypothetical protein compare
BBR_RS14260 -4.2 -1.5 ABC transporter ATP-binding protein compare
BBR_RS11590 -4.2 -1.1 30S ribosomal protein S18 compare
BBR_RS12375 -4.1 -1.8 pantetheine-phosphate adenylyltransferase compare
BBR_RS11510 -4.0 -2.4 signal recognition particle-docking protein FtsY compare
BBR_RS15455 -4.0 -2.3 orotate phosphoribosyltransferase compare
BBR_RS13455 -3.9 -2.7 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS13370 -3.8 -2.6 phosphoribosylamine--glycine ligase compare
BBR_RS20885 -3.8 -1.0 hypothetical protein compare
BBR_RS19070 -3.8 -1.4 50S ribosomal protein L33 compare
BBR_RS11470 -3.7 -1.3 6-phosphogluconolactonase compare
BBR_RS20435 -3.6 -0.9 CCA tRNA nucleotidyltransferase compare
BBR_RS13300 -3.6 -1.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS12895 -3.6 -10.0 quinone-dependent dihydroorotate dehydrogenase compare
BBR_RS12555 -3.6 -7.2 protein-tyrosine-phosphatase compare
BBR_RS14215 -3.6 -4.1 peptidase compare
BBR_RS15435 -3.5 -2.4 dihydroorotase compare
BBR_RS16675 -3.5 -5.4 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS18735 -3.4 -9.9 hypothetical protein compare
BBR_RS12900 -3.3 -2.9 DeoR/GlpR transcriptional regulator compare
BBR_RS10980 -3.3 -11.3 TetR/AcrR family transcriptional regulator compare
BBR_RS14540 -3.3 -5.0 Na+/H+ antiporter NhaA compare
BBR_RS11185 -3.3 -4.0 type I DNA topoisomerase compare
BBR_RS21170 -3.2 -7.5 membrane protein insertion efficiency factor YidD compare
BBR_RS15440 -3.2 -2.2 orotidine-5'-phosphate decarboxylase compare
BBR_RS19190 -3.2 -9.9 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS20690 -3.2 -2.2 hypothetical protein compare
BBR_RS18215 -3.1 -6.5 AI-2E family transporter compare
BBR_RS20455 -3.1 -9.6 thioredoxin-disulfide reductase compare
BBR_RS15425 -3.1 -2.1 aspartate carbamoyltransferase compare
BBR_RS13635 -3.1 -2.1 carbamoyl-phosphate synthase large subunit compare
BBR_RS19125 -3.1 -10.4 hypothetical protein compare
BBR_RS13125 -3.1 -1.0 ABC transporter permease compare
BBR_RS17135 -3.1 -1.6 RluA family pseudouridine synthase compare
BBR_RS14370 -3.1 -5.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS18050 -3.0 -4.3 threonylcarbamoyl-AMP synthase compare
BBR_RS20185 -3.0 -12.9 sugar ABC transporter permease compare
BBR_RS20465 -3.0 -8.2 chromosome partitioning protein compare
BBR_RS12545 -3.0 -4.8 DUF4012 domain-containing protein compare
BBR_RS20245 -2.9 -22.8 cation-translocating P-type ATPase compare
BBR_RS15070 -2.9 -3.4 endolytic transglycosylase MltG compare
BBR_RS15090 -2.8 -1.0 type II 3-dehydroquinate dehydratase compare
BBR_RS16430 -2.7 -2.4 nucleotide pyrophosphatase compare
BBR_RS17290 -2.7 -7.8 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS16635 -2.7 -2.5 ABC transporter ATP-binding protein compare
BBR_RS16820 -2.7 -2.2 RNA polymerase sigma factor RpoE compare
BBR_RS18180 -2.7 -7.9 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS14130 -2.6 -1.6 septum formation initiator family protein compare
BBR_RS19270 -2.6 -1.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS11720 -2.5 -4.2 DUF2469 domain-containing protein compare
BBR_RS20850 -2.5 -1.1 resolvase compare
BBR_RS12305 -2.5 -6.8 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS10620 -2.5 -3.6 phosphoprotein phosphatase compare
BBR_RS16640 -2.5 -3.7 ABC transporter permease compare
BBR_RS19740 -2.5 -13.2 DUF2142 domain-containing protein compare
BBR_RS12590 -2.4 -2.1 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS20190 -2.4 -12.3 Raffinose-binding protein compare
BBR_RS12620 -2.4 -6.5 glycosyltransferase family 1 protein compare
BBR_RS16940 -2.4 -3.3 hypothetical protein compare
BBR_RS12905 -2.4 -2.3 galactose-1-phosphate uridylyltransferase compare
BBR_RS16650 -2.4 -7.8 ABC transporter substrate-binding protein compare
BBR_RS15805 -2.4 -5.1 prolipoprotein diacylglyceryl transferase compare
BBR_RS19200 -2.3 -10.3 hypothetical protein compare
BBR_RS14205 -2.3 -2.2 hypothetical protein compare
BBR_RS19465 -2.3 -2.7 ribonuclease E/G compare
BBR_RS15055 -2.3 -2.6 hypothetical protein compare
BBR_RS20720 -2.3 -3.9 DUF4422 domain-containing protein compare
BBR_RS12820 -2.3 -7.9 hypothetical protein compare
BBR_RS12880 -2.3 -6.2 Crp/Fnr family transcriptional regulator compare
BBR_RS17970 -2.3 -10.3 gfo/Idh/MocA family oxidoreductase compare
BBR_RS11415 -2.2 -10.0 amino acid ABC transporter substrate-binding protein compare
BBR_RS20180 -2.2 -11.4 carbohydrate ABC transporter permease compare
BBR_RS15665 -2.1 -2.1 preprotein translocase subunit YajC compare
BBR_RS17500 -2.1 -4.4 hypothetical protein compare
BBR_RS16905 -2.1 -4.2 hypothetical protein compare
BBR_RS10265 -2.1 -7.7 DNA replication and repair protein RecF compare
BBR_RS17505 -2.1 -7.3 VWA domain-containing protein compare
BBR_RS13630 -2.1 -4.3 carbamoyl-phosphate synthase small subunit compare
BBR_RS10660 -2.1 -12.4 esterase compare
BBR_RS17495 -2.1 -7.0 DUF58 domain-containing protein compare
BBR_RS14190 -2.0 -4.8 transcriptional regulator compare
BBR_RS11135 -2.0 -9.8 dihydrodipicolinate synthase family protein compare
BBR_RS12975 -2.0 -9.0 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS20175 -2.0 -12.6 LacI family transcriptional regulator compare
BBR_RS18745 -2.0 -1.3 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS19205 -2.0 -16.2 Evolved beta-galactosidase subunit alpha compare
BBR_RS11410 -2.0 -11.6 iron permease compare
BBR_RS18795 -2.0 -3.3 tRNA pseudouridine(38-40) synthase TruA compare
BBR_RS15695 -2.0 -5.0 membrane channel protein compare
BBR_RS10460 -1.9 -11.2 peroxiredoxin compare
BBR_RS19155 -1.9 -4.9 phosphate ABC transporter, permease protein PstA compare
BBR_RS16845 -1.9 -1.2 bifunctional folylpolyglutamate synthase/dihydrofolate synthase compare
BBR_RS12550 -1.9 -7.5 sugar transferase compare
BBR_RS17515 -1.9 -4.3 hypothetical protein compare
BBR_RS11770 -1.9 -3.7 chorismate mutase compare
BBR_RS18955 -1.8 -10.6 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS18635 -1.8 -3.5 PspC domain-containing protein compare
BBR_RS13805 -1.8 -1.5 hypothetical protein compare
BBR_RS18990 -1.8 -1.2 AbrB family transcriptional regulator compare
BBR_RS13770 -1.7 -2.0 DNA repair protein RecO compare
BBR_RS15650 -1.7 -1.4 Holliday junction resolvase compare
BBR_RS16810 -1.7 -7.2 aldose 1-epimerase compare
BBR_RS12980 -1.7 -7.9 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS19645 -1.6 -6.4 RNA degradosome polyphosphate kinase compare
BBR_RS17680 -1.6 -2.3 hypothetical protein compare
BBR_RS12355 -1.6 -2.9 ribonuclease III compare
BBR_RS16255 -1.6 -2.0 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS12610 -1.6 -3.1 capsular polysaccharide biosynthesis protein compare
BBR_RS19760 -1.6 -1.4 polysaccharide ABC transporter ATPase compare
BBR_RS15130 -1.6 -2.2 metal-sulfur cluster assembly factor compare
BBR_RS19120 -1.6 -7.3 helicase compare
BBR_RS13750 -1.5 -1.8 DivIVA domain-containing protein compare
BBR_RS15050 -1.5 -1.7 DUF948 domain-containing protein compare
BBR_RS16965 -1.5 -1.0 ATP-dependent DNA helicase compare
BBR_RS17155 -1.5 -0.9 cell division protein SepF compare
BBR_RS10565 -1.5 -12.5 glycogen/starch/alpha-glucan family phosphorylase compare
BBR_RS10890 -1.5 -8.3 LacI family transcriptional regulator compare
BBR_RS19755 -1.5 -6.6 glycosyl transferase compare
BBR_RS19435 -1.5 -2.0 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS19395 -1.5 -2.9 hypothetical protein compare
BBR_RS10445 -1.4 -9.3 HlyC/CorC family transporter compare
BBR_RS17510 -1.4 -3.8 VWA domain-containing protein compare
BBR_RS15785 -1.4 -1.7 CDP-alcohol phosphatidyltransferase family protein compare
BBR_RS19945 -1.4 -5.2 MarR family transcriptional regulator compare
BBR_RS13030 -1.4 -0.9 cell division ATP-binding protein FtsE compare
BBR_RS16625 -1.4 -3.0 DUF3710 domain-containing protein compare
BBR_RS18725 -1.4 -1.5 ribonuclease HI compare
BBR_RS19220 -1.4 -9.9 glycoside hydrolase family 65 protein compare
BBR_RS17490 -1.4 -5.9 MoxR family ATPase compare
BBR_RS14265 -1.3 -2.9 Solute-binding protein of ABC transporter system for metals compare
BBR_RS11805 -1.3 -3.7 hypothetical protein compare
BBR_RS10465 -1.3 -11.0 FAD-dependent oxidoreductase compare
BBR_RS19450 -1.3 -0.9 GTPase ObgE compare
BBR_RS10990 -1.3 -4.7 recombination protein RecR compare
BBR_RS13040 -1.3 -1.4 CHAP domain-containing protein compare
BBR_RS16655 -1.3 -2.7 tyrosine recombinase XerC compare
BBR_RS13800 -1.3 -1.7 hypothetical protein compare
BBR_RS20415 -1.2 -7.5 G5 domain-containing protein compare
BBR_RS20460 -1.2 -2.4 chromosome partitioning protein ParB compare
BBR_RS19795 -1.2 -8.9 hypothetical protein compare
BBR_RS16515 -1.2 -1.7 preprotein translocase subunit SecA compare
BBR_RS20980 -1.2 -1.3 hypothetical protein compare
BBR_RS15660 -1.2 -2.7 Holliday junction branch migration DNA helicase RuvB compare
BBR_RS14625 -1.2 -3.5 pyrroline-5-carboxylate reductase compare
BBR_RS20450 -1.2 -8.1 murein biosynthesis integral membrane protein MurJ compare
BBR_RS16400 -1.2 -1.8 hypothetical protein compare
BBR_RS20375 -1.1 -9.3 glycosyl hydrolase compare
BBR_RS15230 -1.1 -2.5 elongation factor 4 compare
BBR_RS20730 -1.1 -1.7 Crp/Fnr family transcriptional regulator compare
BBR_RS17435 -1.1 -5.0 universal stress protein compare
BBR_RS20725 -1.1 -3.3 hypothetical protein compare
BBR_RS20370 -1.1 -6.7 hypothetical protein compare
BBR_RS18690 -1.1 -3.1 diacylglycerol kinase compare
BBR_RS19160 -1.1 -0.9 phosphate ABC transporter permease subunit PstC compare
BBR_RS12510 -1.1 -7.9 beta-galactosidase compare
BBR_RS11315 -1.0 -5.8 MFS transporter compare
BBR_RS10780 -1.0 -6.8 sucrose phosphorylase compare
BBR_RS10665 -1.0 -9.0 DUF2156 domain-containing protein compare
BBR_RS18695 -1.0 -4.7 PRD domain-containing protein compare
BBR_RS12450 -1.0 -1.4 signal peptidase I compare
BBR_RS20935 -1.0 -1.7 hypothetical protein compare
BBR_RS11675 -1.0 -0.6 hypothetical protein compare
BBR_RS10570 -1.0 -2.1 hypothetical protein compare
BBR_RS12835 -1.0 -3.4 thioredoxin compare
BBR_RS13820 -1.0 -0.7 ATP-binding protein compare
BBR_RS11175 -1.0 -5.2 penicillin-binding protein compare
BBR_RS14075 -1.0 -2.6 glutamate-5-semialdehyde dehydrogenase compare
BBR_RS14400 -0.9 -5.8 acetyltransferase compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in mouse experiments

For mouse diet=StandardDiet; sample=FecalPellet across organisms