Experiment set17IT075 for Bifidobacterium breve UCC2003

Compare to:

mouse 1; day 1; diet=StandardDiet; sample=FecalPellet

200 most important genes:

  gene name fitness t score description  
BBR_RS19395 -6.8 -3.8 hypothetical protein compare
BBR_RS20200 -6.5 -21.4 alpha-galactosidase compare
BBR_RS11540 -6.3 -4.4 DUF1727 domain-containing protein compare
BBR_RS13805 -6.3 -3.6 hypothetical protein compare
BBR_RS10980 -6.2 -11.1 TetR/AcrR family transcriptional regulator compare
BBR_RS12895 -6.2 -9.5 quinone-dependent dihydroorotate dehydrogenase compare
BBR_RS18595 -6.2 -18.6 1,4-dihydroxy-2-naphthoate octaprenyltransferase compare
BBR_RS16540 -6.2 -4.2 XRE family transcriptional regulator compare
BBR_RS16300 -5.9 -5.8 pyridoxamine 5'-phosphate oxidase family protein compare
BBR_RS10285 -5.8 -3.3 membrane protein compare
BBR_RS12910 -5.8 -19.9 galactokinase compare
BBR_RS17775 -5.7 -4.0 LacI family DNA-binding transcriptional regulator compare
BBR_RS17455 -5.7 -5.6 DNA-binding response regulator compare
BBR_RS13705 -5.7 -8.6 Conserved hypothetical membrane spanning protein, contains a vitamin K epoxide reductase domain compare
BBR_RS10255 -5.5 -3.8 chromosomal replication initiator protein DnaA compare
BBR_RS13375 -5.2 -3.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BBR_RS13380 -5.2 -7.9 amidophosphoribosyltransferase compare
BBR_RS13445 -4.8 -7.3 phosphoribosylformylglycinamidine synthase compare
BBR_RS15055 -4.8 -3.3 hypothetical protein compare
BBR_RS13450 -4.6 -3.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS19355 -4.5 -2.6 tRNA-Gly compare
BBR_RS13820 -4.5 -1.5 ATP-binding protein compare
BBR_RS11185 -4.5 -4.3 type I DNA topoisomerase compare
BBR_RS15080 -4.4 -3.0 chorismate synthase compare
BBR_RS10755 -4.4 -3.0 adenylosuccinate synthase compare
BBR_RS19465 -4.4 -6.2 ribonuclease E/G compare
BBR_RS17435 -4.4 -11.6 universal stress protein compare
BBR_RS12235 -4.3 -1.5 hypothetical protein compare
BBR_RS18745 -4.3 -2.1 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS14230 -4.2 -2.9 HAMP domain-containing histidine kinase compare
BBR_RS12045 -4.2 -6.9 hypothetical protein compare
BBR_RS19450 -4.2 -2.4 GTPase ObgE compare
BBR_RS15085 -4.2 -2.4 3-dehydroquinate synthase compare
BBR_RS11410 -4.1 -20.8 iron permease compare
BBR_RS16240 -4.0 -5.5 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD compare
BBR_RS18215 -4.0 -10.7 AI-2E family transporter compare
BBR_RS14215 -4.0 -2.7 peptidase compare
BBR_RS16985 -3.9 -2.7 transcriptional repressor LexA compare
BBR_RS12370 -3.9 -1.3 cell division protein compare
BBR_RS19905 -3.9 -1.3 methionine--tRNA ligase compare
BBR_RS11510 -3.9 -2.6 signal recognition particle-docking protein FtsY compare
BBR_RS11720 -3.9 -6.4 DUF2469 domain-containing protein compare
BBR_RS11415 -3.8 -15.1 amino acid ABC transporter substrate-binding protein compare
BBR_RS17640 -3.8 -2.6 DNA-directed RNA polymerase subunit omega compare
BBR_RS16490 -3.8 -2.6 polyprenyl synthase compare
BBR_RS15520 -3.8 -3.6 shikimate 5-dehydrogenase compare
BBR_RS19125 -3.8 -8.7 hypothetical protein compare
BBR_RS11590 -3.7 -1.3 30S ribosomal protein S18 compare
BBR_RS14260 -3.7 -1.8 ABC transporter ATP-binding protein compare
BBR_RS19155 -3.7 -11.2 phosphate ABC transporter, permease protein PstA compare
BBR_RS21170 -3.6 -8.0 membrane protein insertion efficiency factor YidD compare
BBR_RS16425 -3.6 -2.5 DUF3071 domain-containing protein compare
BBR_RS10720 -3.6 -17.8 PDZ domain-containing protein compare
BBR_RS19160 -3.6 -1.7 phosphate ABC transporter permease subunit PstC compare
BBR_RS19190 -3.6 -6.9 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS16750 -3.6 -2.5 ParA family protein compare
BBR_RS14370 -3.6 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS18735 -3.5 -14.5 hypothetical protein compare
BBR_RS19640 -3.5 -1.2 phosphoesterase compare
BBR_RS12605 -3.5 -4.7 glycosyltransferase family 2 protein compare
BBR_RS11805 -3.4 -6.0 hypothetical protein compare
BBR_RS16255 -3.2 -3.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS10660 -3.2 -17.7 esterase compare
BBR_RS20245 -3.2 -24.7 cation-translocating P-type ATPase compare
BBR_RS10445 -3.2 -18.2 HlyC/CorC family transporter compare
BBR_RS15455 -3.2 -2.2 orotate phosphoribosyltransferase compare
BBR_RS13370 -3.2 -2.2 phosphoribosylamine--glycine ligase compare
BBR_RS20435 -3.1 -1.1 CCA tRNA nucleotidyltransferase compare
BBR_RS16635 -3.1 -2.1 ABC transporter ATP-binding protein compare
BBR_RS20465 -3.0 -9.5 chromosome partitioning protein compare
BBR_RS17500 -3.0 -7.5 hypothetical protein compare
BBR_RS14625 -2.9 -7.7 pyrroline-5-carboxylate reductase compare
BBR_RS16675 -2.9 -5.2 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS13455 -2.9 -2.8 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS19760 -2.9 -2.6 polysaccharide ABC transporter ATPase compare
BBR_RS20085 -2.8 -11.2 histidine phosphatase family protein compare
BBR_RS14765 -2.8 -1.9 hypothetical protein compare
BBR_RS12545 -2.8 -4.6 DUF4012 domain-containing protein compare
BBR_RS15435 -2.7 -1.9 dihydroorotase compare
BBR_RS12590 -2.7 -2.7 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS13910 -2.7 -1.5 arginine repressor compare
BBR_RS16820 -2.7 -2.1 RNA polymerase sigma factor RpoE compare
BBR_RS13125 -2.7 -1.1 ABC transporter permease compare
BBR_RS15640 -2.7 -5.0 HIT domain-containing protein compare
BBR_RS20195 -2.6 -14.6 ROK family transcriptional regulator compare
BBR_RS12980 -2.6 -14.2 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS13070 -2.6 -1.2 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS16905 -2.5 -6.4 hypothetical protein compare
BBR_RS13630 -2.5 -1.7 carbamoyl-phosphate synthase small subunit compare
BBR_RS12880 -2.5 -7.8 Crp/Fnr family transcriptional regulator compare
BBR_RS15665 -2.5 -2.1 preprotein translocase subunit YajC compare
BBR_RS15440 -2.4 -1.7 orotidine-5'-phosphate decarboxylase compare
BBR_RS18955 -2.4 -12.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS18050 -2.4 -4.0 threonylcarbamoyl-AMP synthase compare
BBR_RS20720 -2.4 -5.0 DUF4422 domain-containing protein compare
BBR_RS19260 -2.4 -13.4 hypothetical protein compare
BBR_RS20460 -2.4 -5.0 chromosome partitioning protein ParB compare
BBR_RS17135 -2.4 -1.6 RluA family pseudouridine synthase compare
BBR_RS13635 -2.4 -2.8 carbamoyl-phosphate synthase large subunit compare
BBR_RS20910 -2.3 -2.2 DUF1829 domain-containing protein compare
BBR_RS12610 -2.3 -5.2 capsular polysaccharide biosynthesis protein compare
BBR_RS15425 -2.3 -1.6 aspartate carbamoyltransferase compare
BBR_RS12975 -2.3 -11.8 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS12365 -2.3 -6.4 DUF177 domain-containing protein compare
BBR_RS20850 -2.3 -1.1 resolvase compare
BBR_RS15090 -2.2 -1.0 type II 3-dehydroquinate dehydratase compare
BBR_RS18185 -2.2 -5.4 hypoxanthine phosphoribosyltransferase compare
BBR_RS13770 -2.2 -3.0 DNA repair protein RecO compare
BBR_RS19795 -2.2 -14.1 hypothetical protein compare
BBR_RS10460 -2.2 -12.0 peroxiredoxin compare
BBR_RS17290 -2.1 -6.0 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS13515 -2.1 -7.4 putative sulfate exporter family transporter compare
BBR_RS15845 -2.1 -1.0 hypothetical protein compare
BBR_RS17515 -2.1 -5.3 hypothetical protein compare
BBR_RS16530 -2.1 -4.1 recombinase RecA compare
BBR_RS15695 -2.0 -4.5 membrane channel protein compare
BBR_RS19435 -2.0 -1.4 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS16250 -2.0 -2.6 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB compare
BBR_RS14205 -2.0 -1.4 hypothetical protein compare
BBR_RS16400 -2.0 -2.0 hypothetical protein compare
BBR_RS12305 -2.0 -5.4 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS13210 -2.0 -4.2 anion transporter compare
BBR_RS17510 -1.9 -4.4 VWA domain-containing protein compare
BBR_RS17490 -1.9 -8.7 MoxR family ATPase compare
BBR_RS19755 -1.9 -10.0 glycosyl transferase compare
BBR_RS14265 -1.9 -4.8 Solute-binding protein of ABC transporter system for metals compare
BBR_RS10890 -1.9 -11.2 LacI family transcriptional regulator compare
BBR_RS10265 -1.9 -8.4 DNA replication and repair protein RecF compare
BBR_RS15445 -1.9 -3.4 dihydroorotate dehydrogenase electron transfer subunit compare
BBR_RS15805 -1.9 -4.3 prolipoprotein diacylglyceryl transferase compare
BBR_RS16430 -1.9 -2.5 nucleotide pyrophosphatase compare
BBR_RS17505 -1.9 -6.3 VWA domain-containing protein compare
BBR_RS13420 -1.8 -2.2 DUF4230 domain-containing protein compare
BBR_RS17900 -1.8 -9.0 glutamate--cysteine ligase compare
BBR_RS11770 -1.8 -3.1 chorismate mutase compare
BBR_RS15505 -1.8 -6.4 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS10580 -1.7 -3.8 septation inhibitor protein compare
BBR_RS13740 -1.7 -3.7 DUF3052 domain-containing protein compare
BBR_RS17495 -1.7 -6.4 DUF58 domain-containing protein compare
BBR_RS13640 -1.7 -3.6 orotidine-5'-phosphate decarboxylase compare
BBR_RS19645 -1.7 -7.5 RNA degradosome polyphosphate kinase compare
BBR_RS16245 -1.7 -3.0 ribosomal-protein-alanine N-acetyltransferase compare
BBR_RS10620 -1.7 -1.9 phosphoprotein phosphatase compare
BBR_RS14540 -1.6 -2.8 Na+/H+ antiporter NhaA compare
BBR_RS19095 -1.6 -8.4 magnesium transporter compare
BBR_RS20760 -1.6 -3.0 hypothetical protein compare
BBR_RS20450 -1.6 -11.2 murein biosynthesis integral membrane protein MurJ compare
BBR_RS18755 -1.6 -1.9 30S ribosome-binding factor RbfA compare
BBR_RS21015 -1.6 -0.9 hypothetical protein compare
BBR_RS14140 -1.6 -1.7 Ppx/GppA family phosphatase compare
BBR_RS16285 -1.6 -3.8 magnesium transporter CorA family protein compare
BBR_RS20415 -1.5 -7.9 G5 domain-containing protein compare
BBR_RS10990 -1.5 -6.8 recombination protein RecR compare
BBR_RS20135 -1.5 -12.7 alpha-glucosidase compare
BBR_RS16440 -1.5 -1.3 SGNH/GDSL hydrolase family protein compare
BBR_RS20190 -1.5 -10.5 Raffinose-binding protein compare
BBR_RS18795 -1.5 -2.9 tRNA pseudouridine(38-40) synthase TruA compare
BBR_RS16640 -1.5 -2.8 ABC transporter permease compare
BBR_RS14200 -1.5 -2.0 WhiB family transcriptional regulator compare
BBR_RS12555 -1.5 -3.9 protein-tyrosine-phosphatase compare
BBR_RS20180 -1.5 -9.6 carbohydrate ABC transporter permease compare
BBR_RS14400 -1.4 -9.1 acetyltransferase compare
BBR_RS10900 -1.4 -2.6 molecular chaperone DnaK compare
BBR_RS19945 -1.4 -5.6 MarR family transcriptional regulator compare
BBR_RS19825 -1.4 -9.1 HD domain-containing protein compare
BBR_RS13750 -1.4 -0.9 DivIVA domain-containing protein compare
BBR_RS16960 -1.4 -1.6 transcriptional regulator MraZ compare
BBR_RS12785 -1.4 -1.6 transcriptional regulator compare
BBR_RS10465 -1.4 -11.4 FAD-dependent oxidoreductase compare
BBR_RS12660 -1.4 -4.5 EpsG family protein compare
BBR_RS20185 -1.4 -9.2 sugar ABC transporter permease compare
BBR_RS16650 -1.4 -5.2 ABC transporter substrate-binding protein compare
BBR_RS20690 -1.3 -1.4 hypothetical protein compare
BBR_RS16610 -1.3 -3.3 hypothetical protein compare
BBR_RS19740 -1.3 -8.4 DUF2142 domain-containing protein compare
BBR_RS15050 -1.3 -1.7 DUF948 domain-containing protein compare
BBR_RS19120 -1.3 -5.1 helicase compare
BBR_RS19325 -1.3 -1.7 hypothetical protein compare
BBR_RS17555 -1.3 -2.6 ubiquitin-like protein Pup compare
BBR_RS12770 -1.3 -2.4 hypothetical protein compare
BBR_RS12355 -1.2 -2.6 ribonuclease III compare
BBR_RS18725 -1.2 -1.4 ribonuclease HI compare
BBR_RS11315 -1.2 -7.1 MFS transporter compare
BBR_RS13040 -1.2 -0.8 CHAP domain-containing protein compare
BBR_RS14550 -1.2 -3.2 hypothetical protein compare
BBR_RS19165 -1.2 -1.5 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS12620 -1.2 -5.1 glycosyltransferase family 1 protein compare
BBR_RS17155 -1.2 -0.8 cell division protein SepF compare
BBR_RS14190 -1.2 -3.3 transcriptional regulator compare
BBR_RS12820 -1.1 -5.3 hypothetical protein compare
BBR_RS20175 -1.1 -8.1 LacI family transcriptional regulator compare
BBR_RS19655 -1.1 -5.8 hypothetical protein compare
BBR_RS13945 -1.1 -1.9 Txe/YoeB family addiction module toxin compare
BBR_RS15340 -1.1 -1.7 hypothetical protein compare
BBR_RS14315 -1.1 -4.1 DNA polymerase I compare
BBR_RS20930 -1.1 -1.8 hypothetical protein compare
BBR_RS10555 -1.1 -1.2 DUF3073 domain-containing protein compare
BBR_RS16940 -1.1 -2.2 hypothetical protein compare
BBR_RS15450 -1.0 -1.3 dihydroorotate dehydrogenase compare
BBR_RS16950 -1.0 -1.1 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For mouse diet=StandardDiet; sample=FecalPellet in Bifidobacterium breve UCC2003

For mouse diet=StandardDiet; sample=FecalPellet across organisms