Experiment set17IT066 for Pseudomonas stutzeri RCH2

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
Psest_1540 -5.8 -2.4 biotin-dependent carboxylase uncharacterized domain compare
Psest_4406 -3.4 -1.8 hypothetical protein compare
Psest_4335 -3.2 -3.2 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_0191 -2.8 -0.9 PAS domain S-box compare
Psest_3092 -2.6 -2.7 ribonuclease III, bacterial compare
Psest_3351 -2.5 -6.5 peptide chain release factor 3 compare
Psest_0857 -2.5 -2.2 Membrane transporters of cations and cationic drugs compare
Psest_3910 -2.3 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_3247 -2.3 -2.0 Uncharacterized membrane protein compare
Psest_2579 -2.2 -6.0 amidophosphoribosyltransferase compare
Psest_2229 -2.2 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_2651 -2.1 -5.1 DNA topoisomerase I, bacterial compare
Psest_0558 -2.0 -1.0 urease, beta subunit compare
Psest_1661 -2.0 -1.9 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1879 -2.0 -3.9 Trk-type K+ transport systems, membrane components compare
Psest_0514 -2.0 -4.9 lytic murein transglycosylase B compare
Psest_0028 -2.0 -4.6 Coproporphyrinogen III oxidase compare
Psest_4310 -2.0 -1.9 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_2752 -1.9 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_2872 -1.9 -2.5 protein RecA compare
Psest_1510 -1.9 -3.1 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0958 -1.9 -7.0 Oligoketide cyclase/lipid transport protein compare
Psest_1167 -1.9 -1.1 hypothetical protein compare
Psest_1013 -1.9 -3.5 phosphoribosylamine--glycine ligase compare
Psest_0013 -1.8 -5.1 Lauroyl/myristoyl acyltransferase compare
Psest_0417 -1.7 -2.0 Acyl-CoA dehydrogenases compare
Psest_4078 -1.7 -1.7 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_1242 -1.7 -2.7 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_3159 -1.6 -5.1 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2946 -1.6 -3.2 septum site-determining protein MinD compare
Psest_0243 -1.6 -1.3 hypothetical protein compare
Psest_1704 -1.6 -1.1 Dehydrogenases (flavoproteins) compare
Psest_0164 -1.6 -0.9 Glutaredoxin, GrxC family compare
Psest_1656 -1.6 -2.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_1657 -1.6 -1.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2527 -1.6 -6.6 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_0542 -1.6 -7.9 AMP nucleosidase compare
Psest_2448 -1.6 -4.5 AraC-type DNA-binding domain-containing proteins compare
Psest_3991 -1.5 -2.7 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_2304 -1.5 -1.1 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1655 -1.5 -3.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0078 -1.4 -1.1 hypothetical protein compare
Psest_3112 -1.4 -2.8 electron transport complex, RnfABCDGE type, A subunit compare
Psest_1293 -1.4 -1.3 VanZ like family. compare
Psest_0515 -1.4 -2.9 rare lipoprotein A compare
Psest_0999 -1.4 -2.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3100 -1.4 -1.6 RNA polymerase sigma factor RpoE compare
Psest_1814 -1.4 -9.3 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0359 -1.4 -2.8 Transcriptional regulators compare
Psest_1884 -1.4 -2.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1601 -1.3 -1.7 Signal transduction histidine kinase compare
Psest_4044 -1.3 -1.8 type I site-specific deoxyribonuclease, HsdR family compare
Psest_4003 -1.3 -3.9 TIGR00153 family protein compare
Psest_0212 -1.3 -1.8 exodeoxyribonuclease V, gamma subunit compare
Psest_1990 -1.3 -2.5 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Psest_2775 -1.3 -3.1 Glycerol-3-phosphate dehydrogenase compare
Psest_2786 -1.3 -1.0 Domain of unknown function (DUF3597). compare
Psest_4010 -1.3 -1.0 peroxiredoxin, OsmC subfamily compare
Psest_3878 -1.3 -2.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1762 -1.3 -2.0 cytochrome c-type biogenesis protein CcmI compare
Psest_3399 -1.3 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_1824 -1.3 -2.6 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_2150 -1.3 -2.0 DNA polymerase LigD, polymerase domain compare
Psest_2945 -1.3 -1.3 septum site-determining protein MinC compare
Psest_3745 -1.3 -2.2 Uncharacterized enzyme of heme biosynthesis compare
Psest_1204 -1.3 -2.2 Transcriptional regulators compare
Psest_1306 -1.2 -1.5 hypothetical protein compare
Psest_1677 -1.2 -2.1 Protein-tyrosine-phosphatase compare
Psest_2566 -1.2 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_2285 -1.2 -2.8 ATP-dependent protease La compare
Psest_1295 -1.2 -4.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1660 -1.2 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0722 -1.2 -5.2 Predicted ATPase compare
Psest_3080 -1.2 -1.8 AraC-type DNA-binding domain-containing proteins compare
Psest_2648 -1.2 -1.8 hypothetical protein compare
Psest_1322 -1.2 -1.6 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_3447 -1.1 -1.4 Uncharacterized MobA-related protein compare
Psest_2248 -1.1 -2.3 Predicted transcriptional regulators compare
Psest_1947 -1.1 -0.8 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_1659 -1.1 -2.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3031 -1.1 -0.6 hypothetical protein compare
Psest_1388 -1.1 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_1366 -1.1 -1.5 hypothetical protein compare
Psest_2591 -1.1 -1.7 3-isopropylmalate dehydratase, large subunit compare
Psest_2719 -1.1 -1.3 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_3565 -1.1 -1.1 hypothetical protein compare
Psest_0969 -1.1 -1.3 transcription elongation factor GreA compare
Psest_4098 -1.1 -2.1 Superfamily I DNA and RNA helicases compare
Psest_2531 -1.1 -6.5 cytochrome c oxidase accessory protein FixG compare
Psest_1012 -1.1 -2.6 Signal transduction histidine kinase compare
Psest_2538 -1.1 -0.9 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_2243 -1.1 -0.9 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_0697 -1.1 -2.6 ribosomal protein L9 compare
Psest_4371 -1.1 -2.3 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_2773 -1.1 -4.2 glycerol kinase compare
Psest_2714 -1.1 -1.8 7-cyano-7-deazaguanine reductase compare
Psest_2288 -1.1 -2.1 trigger factor compare
Psest_2384 -1.1 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_2530 -1.0 -3.5 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_3115 -1.0 -3.9 electron transport complex, RnfABCDGE type, D subunit compare
Psest_2434 -1.0 -0.9 Protein of unknown function (DUF2892). compare
Psest_3904 -1.0 -1.2 hypothetical protein compare
Psest_3816 -1.0 -0.7 DNA-directed RNA polymerase, omega subunit compare
Psest_3700 -1.0 -0.9 hypothetical protein compare
Psest_0872 -1.0 -0.9 Helix-turn-helix. compare
Psest_1226 -1.0 -2.4 hypothetical protein compare
Psest_1238 -1.0 -4.8 Predicted membrane protein/domain compare
Psest_1873 -1.0 -2.5 Predicted permease, DMT superfamily compare
Psest_1474 -1.0 -1.6 phosphoribosylaminoimidazole synthetase compare
Psest_0508 -1.0 -4.6 gamma-glutamyl phosphate reductase compare
Psest_4273 -1.0 -3.9 Lysophospholipase compare
Psest_3301 -1.0 -2.1 Predicted transcriptional regulator, BolA superfamily compare
Psest_3117 -1.0 -2.3 electron transport complex, RnfABCDGE type, E subunit compare
Psest_1910 -1.0 -2.4 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase compare
Psest_1179 -0.9 -1.4 2-hydroxy-3-oxopropionate reductase compare
Psest_3862 -0.9 -5.9 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0088 -0.9 -3.0 phosphonate metabolism protein PhnP compare
Psest_1538 -0.9 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_1473 -0.9 -3.5 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2120 -0.9 -1.7 Transcriptional regulator compare
Psest_0334 -0.9 -1.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0309 -0.9 -0.9 RND family efflux transporter, MFP subunit compare
Psest_1149 -0.9 -2.5 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_0503 -0.9 -1.3 Acyl dehydratase compare
Psest_0064 -0.9 -1.8 Transcriptional regulator compare
Psest_4043 -0.9 -2.0 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_3535 -0.9 -1.4 hypothetical protein compare
Psest_4274 -0.9 -1.5 hypothetical protein compare
Psest_0040 -0.9 -3.7 Protein of unknown function (DUF2934). compare
Psest_2308 -0.9 -0.8 Predicted Fe-S protein compare
Psest_1920 -0.9 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_0346 -0.9 -2.3 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_3056 -0.9 -2.7 hypothetical protein compare
Psest_0209 -0.9 -1.3 membrane protein AbrB duplication compare
Psest_3853 -0.9 -2.0 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_4221 -0.9 -2.6 homoserine kinase, Neisseria type compare
Psest_4209 -0.9 -1.4 Uncharacterized conserved small protein compare
Psest_1631 -0.9 -1.4 Uncharacterized conserved small protein compare
Psest_1103 -0.9 -1.6 GTP-binding protein YchF compare
Psest_3998 -0.9 -3.7 glutamate--cysteine ligase compare
Psest_1913 -0.8 -2.0 Transcriptional regulator compare
Psest_2590 -0.8 -0.7 3-isopropylmalate dehydratase, small subunit compare
Psest_0959 -0.8 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_3113 -0.8 -0.8 electron transport complex, RnfABCDGE type, B subunit compare
Psest_3790 -0.8 -4.7 Cytochrome c5 compare
Psest_3164 -0.8 -3.4 Predicted esterase compare
Psest_0310 -0.8 -1.9 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_1249 -0.8 -3.3 serine O-acetyltransferase compare
Psest_2083 -0.8 -3.0 Putative sterol carrier protein compare
Psest_0063 -0.8 -4.3 tryptophan synthase, beta subunit compare
Psest_2337 -0.8 -2.9 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component compare
Psest_3114 -0.8 -3.9 electron transport complex, RnfABCDGE type, C subunit compare
Psest_3180 -0.8 -4.3 Exonuclease I compare
Psest_0988 -0.8 -1.2 Protein of unknown function (DUF2845). compare
Psest_0312 -0.8 -3.3 Superfamily II DNA and RNA helicases compare
Psest_2793 -0.8 -2.0 hypothetical protein compare
Psest_3458 -0.8 -1.4 hypothetical protein compare
Psest_0520 -0.8 -0.4 hypothetical protein compare
Psest_3182 -0.8 -4.6 Uncharacterized membrane protein compare
Psest_1725 -0.8 -4.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0376 -0.8 -2.4 glucarate dehydratase compare
Psest_0192 -0.8 -3.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4301 -0.8 -1.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2581 -0.8 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_3270 -0.8 -1.5 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_2899 -0.8 -0.7 hypothetical protein compare
Psest_0175 -0.8 -2.6 Xaa-Pro aminopeptidase compare
Psest_3014 -0.8 -1.2 cob(I)alamin adenosyltransferase compare
Psest_4219 -0.8 -1.6 DNA polymerase I compare
Psest_1022 -0.8 -3.9 Thiol:disulfide interchange protein compare
Psest_1636 -0.8 -1.8 putative transporter, required for glycine utilization (from data) compare
Psest_0498 -0.7 -0.6 ribosome small subunit-dependent GTPase A compare
Psest_3797 -0.7 -3.4 hypothetical protein compare
Psest_3322 -0.7 -5.5 TIGR02099 family protein compare
Psest_2589 -0.7 -4.4 3-isopropylmalate dehydrogenase compare
Psest_0717 -0.7 -5.4 Protein of unknown function (DUF1631). compare
Psest_2772 -0.7 -2.4 MIP family channel proteins compare
Psest_2643 -0.7 -1.1 Beta-glucosidase-related glycosidases compare
Psest_0485 -0.7 -1.4 clan AA aspartic protease, TIGR02281 family compare
Psest_3756 -0.7 -1.7 hypothetical protein compare
Psest_1185 -0.7 -1.9 heavy metal response regulator compare
Psest_3762 -0.7 -1.7 iron donor protein CyaY compare
Psest_3954 -0.7 -1.5 Small protein A (tmRNA-binding) compare
Psest_3938 -0.7 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_3802 -0.7 -2.9 hypothetical protein compare
Psest_2044 -0.7 -1.6 ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system compare
Psest_4403 -0.7 -2.6 hypothetical protein compare
Psest_1692 -0.7 -3.3 conserved hypothetical protein, YceG family compare
Psest_3384 -0.7 -3.8 glutamate 5-kinase compare
Psest_0066 -0.7 -0.8 Protein of unknown function (DUF3060). compare
Psest_1922 -0.7 -2.9 aminopeptidase N, Escherichia coli type compare
Psest_0041 -0.7 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_3435 -0.7 -2.7 hypothetical protein compare
Psest_0993 -0.7 -4.2 Glucose-6-phosphate isomerase compare
Psest_3913 -0.7 -1.0 hypothetical protein compare
Psest_3670 -0.7 -3.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_3400 -0.7 -0.5 Copper resistance protein D. compare
Psest_0015 -0.7 -1.3 Tetratricopeptide repeat. compare
Psest_0860 -0.7 -3.3 Glycosidases compare
Psest_0325 -0.7 -4.1 Putative threonine efflux protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in lb experiments