Experiment set17IT065 for Pseudomonas fluorescens SBW25-INTG

Compare to:

4-Hydroxybenzoic Acid (C) 1.5 mM

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS21795 +2.1 19.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS24695 +1.7 4.2 PTS glucose transporter subunit IIB compare
PFLU_RS07525 +1.6 3.3 cyclic nucleotide-binding domain-containing protein compare
PFLU_RS21755 +1.3 8.3 flagella biosynthesis chaperone FliJ compare
PFLU_RS00465 +1.3 9.8 spore maturation protein compare
PFLU_RS23195 +1.2 10.8 flagellar basal body P-ring formation protein FlgA compare
PFLU_RS21765 +1.2 7.4 flagellar assembly protein FliH compare
PFLU_RS14715 +1.2 8.7 protein-glutamate O-methyltransferase CheR compare
PFLU_RS00155 +1.2 7.9 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PFLU_RS21850 +1.2 9.8 flagellar basal body L-ring protein FlgH compare
PFLU_RS00695 +1.2 1.8 DUF2789 domain-containing protein compare
PFLU_RS21760 +1.2 9.8 flagellar protein export ATPase FliI compare
PFLU_RS30555 +1.2 2.3 hypothetical protein compare
PFLU_RS30630 +1.2 1.6 hypothetical protein compare
PFLU_RS21660 +1.1 9.2 RNA polymerase sigma factor FliA compare
PFLU_RS21855 +1.1 9.0 flagellar basal-body rod protein FlgG compare
PFLU_RS23165 +1.1 10.2 flagellar hook protein FlgE compare
PFLU_RS21710 +1.1 7.3 flagellar type III secretion system pore protein FliP compare
PFLU_RS31290 +1.1 1.5 EamA family transporter compare
PFLU_RS21860 +1.1 6.7 flagellar basal body rod protein FlgF compare
PFLU_RS21705 +1.1 7.4 flagellar biosynthesis protein FliQ compare
PFLU_RS21675 +1.1 9.1 flagellar biosynthesis protein FlhA compare
PFLU_RS21695 +1.0 6.7 flagellar biosynthesis protein FlhB compare
PFLU_RS23180 +1.0 8.0 flagellar basal body rod protein FlgB compare
PFLU_RS21700 +1.0 7.2 flagellar type III secretion system protein FliR compare
PFLU_RS23175 +1.0 4.6 flagellar basal body rod protein FlgC compare
PFLU_RS09190 +1.0 3.1 hypothetical protein compare
PFLU_RS21780 +1.0 4.7 flagellar hook-basal body complex protein FliE compare
PFLU_RS09535 +1.0 1.5 TIGR03750 family conjugal transfer protein compare
PFLU_RS26660 +1.0 2.8 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
PFLU_RS21840 +1.0 7.3 flagellar assembly peptidoglycan hydrolase FlgJ compare
PFLU_RS06720 +0.9 7.9 MFS transporter compare
PFLU_RS21775 +0.9 7.1 flagellar basal body M-ring protein FliF compare
PFLU_RS21725 +0.9 7.1 flagellar motor switch protein FliM compare
PFLU_RS24715 +0.9 7.2 PTS system trehalose-specific EIIBC component compare
PFLU_RS05660 +0.9 7.4 glycerol kinase GlpK compare
PFLU_RS14805 +0.9 1.0 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS27300 +0.9 8.2 peptidoglycan DD-metalloendopeptidase family protein compare
PFLU_RS22535 +0.9 7.9 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
PFLU_RS30790 +0.9 1.6 hypothetical protein compare
PFLU_RS01480 +0.9 8.3 cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB compare
PFLU_RS21735 +0.9 7.5 flagellar hook-length control protein FliK compare
PFLU_RS01475 +0.9 8.2 UDP-forming cellulose synthase catalytic subunit compare
PFLU_RS01490 +0.9 8.2 cellulose biosynthesis protein BcsC compare
PFLU_RS30520 +0.9 4.5 ketoacyl-ACP synthase III compare
PFLU_RS30840 +0.9 3.2 hypothetical protein compare
PFLU_RS24700 +0.9 6.3 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS31425 +0.9 1.3 hypothetical protein compare
PFLU_RS05210 +0.9 2.8 HU family DNA-binding protein compare
PFLU_RS13795 +0.8 2.2 hypothetical protein compare
PFLU_RS21600 +0.8 3.3 response regulator transcription factor compare
PFLU_RS20545 +0.8 5.3 tRNA pseudouridine(38-40) synthase TruA compare
PFLU_RS21845 +0.8 5.4 flagellar basal body P-ring protein FlgI compare
PFLU_RS19665 +0.8 1.4 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
PFLU_RS11415 +0.8 1.9 protein glxC compare
PFLU_RS21420 +0.8 5.3 patatin-like phospholipase family protein compare
PFLU_RS24705 +0.8 7.1 carbohydrate porin compare
PFLU_RS06570 +0.8 2.7 glycine zipper 2TM domain-containing protein compare
PFLU_RS04835 +0.8 1.1 hypothetical protein compare
PFLU_RS17500 +0.7 3.3 hypothetical protein compare
PFLU_RS28200 +0.7 4.4 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS31825 +0.7 3.5 hypothetical protein compare
PFLU_RS29045 +0.7 2.4 FadR family transcriptional regulator compare
PFLU_RS05665 +0.7 4.8 aquaporin compare
PFLU_RS24535 +0.7 1.5 DUF3509 domain-containing protein compare
PFLU_RS14420 +0.7 1.8 chemotactic transduction protein ChpE compare
PFLU_RS29105 +0.7 5.9 DedA family protein compare
PFLU_RS23170 +0.7 3.8 flagellar hook assembly protein FlgD compare
PFLU_RS05960 +0.7 1.8 NADH:flavin oxidoreductase/NADH oxidase compare
PFLU_RS03585 +0.7 1.2 hypothetical protein compare
PFLU_RS04150 +0.7 4.8 DUF1043 family protein compare
PFLU_RS30975 +0.7 5.0 acyltransferase compare
PFLU_RS31755 +0.7 1.4 hypothetical protein compare
PFLU_RS07760 +0.7 2.8 heavy metal response regulator transcription factor compare
PFLU_RS14195 +0.7 1.7 hypothetical protein compare
PFLU_RS29065 +0.7 0.7 amino acid ABC transporter ATP-binding protein compare
PFLU_RS23205 +0.7 4.6 flagellar protein FlgN compare
PFLU_RS16045 +0.7 2.6 aromatic ring-hydroxylating dioxygenase subunit alpha compare
PFLU_RS00195 +0.7 1.7 dodecin domain-containing protein compare
PFLU_RS31045 +0.7 3.8 ribosome modulation factor compare
PFLU_RS29380 +0.6 5.1 D-amino acid dehydrogenase compare
PFLU_RS14305 +0.6 0.8 sensor histidine kinase compare
PFLU_RS15470 +0.6 1.7 LysR family transcriptional regulator compare
PFLU_RS25125 +0.6 4.9 biliverdin-producing heme oxygenase compare
PFLU_RS30525 +0.6 4.6 SDR family oxidoreductase compare
PFLU_RS04315 +0.6 2.6 rod shape-determining protein MreD compare
PFLU_RS22385 +0.6 5.1 oxygen-independent coproporphyrinogen III oxidase compare
PFLU_RS24305 +0.6 2.0 antibiotic biosynthesis monooxygenase compare
PFLU_RS21770 +0.6 4.4 flagellar motor switch protein FliG compare
PFLU_RS17060 +0.6 1.2 monooxygenase compare
PFLU_RS08180 +0.6 2.7 ketoacyl-ACP synthase III compare
PFLU_RS30530 +0.6 3.6 acetyltransferase compare
PFLU_RS18725 +0.6 1.1 alpha/beta hydrolase compare
PFLU_RS21835 +0.6 5.3 flagellar hook-associated protein FlgK compare
PFLU_RS21295 +0.6 3.9 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
PFLU_RS28400 +0.6 3.0 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase compare
PFLU_RS12210 +0.6 2.1 hypothetical protein compare
PFLU_RS20730 +0.6 0.9 hypothetical protein compare
PFLU_RS10395 +0.6 3.0 NUDIX hydrolase compare
PFLU_RS09625 +0.6 1.8 NAD-dependent epimerase/dehydratase family protein compare
PFLU_RS11720 +0.6 2.1 hypothetical protein compare
PFLU_RS23940 +0.6 2.1 hypothetical protein compare
PFLU_RS21590 +0.6 2.8 hypothetical protein compare
PFLU_RS30505 +0.6 2.5 hypothetical protein compare
PFLU_RS07600 +0.6 1.5 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM compare
PFLU_RS23780 +0.6 2.6 ATPase compare
PFLU_RS16785 +0.6 1.2 GAF domain-containing protein compare
PFLU_RS14155 +0.6 1.4 hypothetical protein compare
PFLU_RS18185 +0.6 2.8 SDR family oxidoreductase compare
PFLU_RS09500 +0.6 0.8 hypothetical protein compare
PFLU_RS13205 +0.6 2.0 DUF883 family protein compare
PFLU_RS01495 +0.6 3.3 SGNH/GDSL hydrolase family protein compare
PFLU_RS15765 +0.6 1.8 general secretion pathway protein GspK compare
PFLU_RS19015 +0.6 3.3 anti-sigma factor compare
PFLU_RS28700 +0.6 2.1 DUF4399 domain-containing protein compare
PFLU_RS12010 +0.6 2.5 amino acid metabolite efflux pump compare
PFLU_RS26390 +0.6 3.6 metallopeptidase compare
PFLU_RS29215 +0.5 4.2 response regulator transcription factor compare
PFLU_RS21730 +0.5 3.6 flagellar basal body-associated protein FliL compare
PFLU_RS14775 +0.5 1.4 enoyl-CoA hydratase compare
PFLU_RS16790 +0.5 2.7 AraC family transcriptional regulator compare
PFLU_RS28950 +0.5 3.2 YecA family protein compare
PFLU_RS18595 +0.5 1.7 cupin domain-containing protein compare
PFLU_RS19820 +0.5 1.6 GNAT family N-acetyltransferase compare
PFLU_RS02830 +0.5 3.3 AI-2E family transporter compare
PFLU_RS15055 +0.5 3.3 aldehyde dehydrogenase family protein compare
PFLU_RS02775 +0.5 0.9 urease accessory protein UreF compare
PFLU_RS10210 +0.5 2.6 oligosaccharide flippase family protein compare
PFLU_RS19935 +0.5 1.1 type II secretion system protein GspF compare
PFLU_RS01910 +0.5 0.7 sterol-binding protein compare
PFLU_RS21610 +0.5 3.6 DUF2802 domain-containing protein compare
PFLU_RS26165 +0.5 1.5 hypothetical protein compare
PFLU_RS29485 +0.5 1.8 DUF4870 domain-containing protein compare
PFLU_RS12915 +0.5 1.6 methyltransferase domain-containing protein compare
PFLU_RS12145 +0.5 1.1 nuclear transport factor 2 family protein compare
PFLU_RS04570 +0.5 1.8 class I SAM-dependent methyltransferase compare
PFLU_RS24335 +0.5 4.1 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS12505 +0.5 2.2 helix-turn-helix transcriptional regulator compare
PFLU_RS07630 +0.5 4.4 transglycosylase SLT domain-containing protein compare
PFLU_RS15005 +0.5 0.6 hypothetical protein compare
PFLU_RS10590 +0.5 2.8 LysR family transcriptional regulator compare
PFLU_RS18435 +0.5 2.0 arsenate reductase (glutaredoxin) compare
PFLU_RS17190 +0.5 1.7 acetyl-CoA C-acetyltransferase compare
PFLU_RS09100 +0.5 2.7 HAMP domain-containing protein compare
PFLU_RS21690 +0.5 1.5 DNA-binding protein compare
PFLU_RS20150 +0.5 2.2 response regulator compare
PFLU_RS24590 +0.5 1.1 cytochrome c assembly protein compare
PFLU_RS13250 +0.5 1.8 sugar kinase compare
PFLU_RS27910 +0.5 0.5 helix-turn-helix transcriptional regulator compare
PFLU_RS29385 +0.5 4.4 AsnC family transcriptional regulator compare
PFLU_RS24980 +0.5 1.5 purine-binding chemotaxis protein CheW compare
PFLU_RS07880 +0.5 3.6 hypothetical protein compare
PFLU_RS09335 +0.5 2.3 hypothetical protein compare
PFLU_RS26145 +0.5 1.2 hypothetical protein compare
PFLU_RS16300 +0.5 1.5 hypothetical protein compare
PFLU_RS13315 +0.5 1.3 class I SAM-dependent methyltransferase compare
PFLU_RS24905 +0.5 3.8 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
PFLU_RS05315 +0.5 1.4 GntR family transcriptional regulator compare
PFLU_RS19640 +0.5 1.6 5-oxoprolinase subunit PxpA compare
PFLU_RS22870 +0.5 2.1 ribonuclease E inhibitor RraB compare
PFLU_RS02765 +0.5 1.3 HupE/UreJ family protein compare
PFLU_RS01470 +0.5 2.9 cellulose synthase operon protein YhjQ compare
PFLU_RS07270 +0.5 3.1 glycine cleavage system protein R compare
PFLU_RS31490 +0.5 0.6 hypothetical protein compare
PFLU_RS17355 +0.5 2.0 creatininase family protein compare
PFLU_RS19580 +0.5 1.6 helix-turn-helix transcriptional regulator compare
PFLU_RS21785 +0.5 3.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS31785 +0.5 1.3 hypothetical protein compare
PFLU_RS31465 +0.5 2.9 hypothetical protein compare
PFLU_RS14545 +0.5 1.3 hypothetical protein compare
PFLU_RS07710 +0.5 4.1 transcription-repair coupling factor compare
PFLU_RS16590 +0.5 2.5 serine hydrolase compare
PFLU_RS29465 +0.4 3.4 phosphomannomutase/phosphoglucomutase compare
PFLU_RS10885 +0.4 1.6 LLM class flavin-dependent oxidoreductase compare
PFLU_RS15785 +0.4 1.2 type II secretion system protein GspH compare
PFLU_RS05020 +0.4 0.7 DUF1120 domain-containing protein compare
PFLU_RS11945 +0.4 1.7 hypothetical protein compare
PFLU_RS03255 +0.4 3.6 multidrug effflux MFS transporter compare
PFLU_RS21615 +0.4 3.2 chemotaxis protein CheW compare
PFLU_RS10550 +0.4 2.0 glutathione S-transferase compare
PFLU_RS11000 +0.4 1.9 cysteine dioxygenase compare
PFLU_RS05890 +0.4 0.6 recombination regulator RecX compare
PFLU_RS20550 +0.4 3.8 FimV family protein compare
PFLU_RS01835 +0.4 3.4 glucan biosynthesis protein G compare
PFLU_RS16710 +0.4 1.4 nitrite reductase small subunit NirD compare
PFLU_RS14125 +0.4 1.0 lysozyme compare
PFLU_RS09255 +0.4 2.6 recombination-associated protein RdgC compare
PFLU_RS16075 +0.4 2.0 aldehyde dehydrogenase compare
PFLU_RS17895 +0.4 2.3 glycosyltransferase family 2 protein compare
PFLU_RS12820 +0.4 2.5 sugar kinase compare
PFLU_RS10595 +0.4 1.1 hypothetical protein compare
PFLU_RS12710 +0.4 1.2 AbrB family transcriptional regulator compare
PFLU_RS06530 +0.4 1.5 collagen-like triple helix repeat-containing protein compare
PFLU_RS25485 +0.4 2.2 LysR family transcriptional regulator compare
PFLU_RS24670 +0.4 0.8 HigA family addiction module antidote protein compare
PFLU_RS08165 +0.4 0.9 acyl carrier protein compare
PFLU_RS14670 +0.4 1.7 GNAT family N-acetyltransferase compare
PFLU_RS16870 +0.4 2.6 SMP-30/gluconolactonase/LRE family protein compare
PFLU_RS01130 +0.4 1.4 amino acid ABC transporter ATP-binding protein compare
PFLU_RS18820 +0.4 1.1 acyl-CoA dehydrogenase compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source 4-Hydroxybenzoic Acid in Pseudomonas fluorescens SBW25-INTG

For carbon source 4-Hydroxybenzoic Acid across organisms