Experiment set17IT064 for Pseudomonas stutzeri RCH2
LB with Choline Lysine 20 mM
Group: stressMedia: LB + Choline Lysine (20 mM)
Culturing: psRCH2_ML7c, 48 well microplate; Tecan Infinite F200, Aerobic, at 28 (C), shaken=orbital
By: Kelly on 4/17/2014
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 885 F1,F2
Specific Phenotypes
For 19 genes in this experiment
For stress Choline Lysine in Pseudomonas stutzeri RCH2
For stress Choline Lysine across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glycine, serine and threonine metabolism
- Fructose and mannose metabolism
- Ascorbate and aldarate metabolism
- C21-Steroid hormone metabolism
- Pyrimidine metabolism
- Bisphenol A degradation
- Nucleotide sugars metabolism
- Polyketide sugar unit biosynthesis
- Aminosugars metabolism
- Linoleic acid metabolism
- Tetrachloroethene degradation
- Benzoate degradation via CoA ligation
- Butanoate metabolism
- Pantothenate and CoA biosynthesis
- Retinol metabolism
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
- Biosynthesis of unsaturated fatty acids
- Biosynthesis of type II polyketide products
- Biosynthesis of alkaloids derived from shikimate pathway
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| choline degradation I | 2 | 2 | 1 |
| glycine betaine biosynthesis I (Gram-negative bacteria) | 2 | 2 | 1 |
| glycine betaine biosynthesis II (Gram-positive bacteria) | 2 | 2 | 1 |
| pseudouridine degradation | 2 | 1 | 1 |
| choline-O-sulfate degradation | 3 | 2 | 1 |
| phosphopantothenate biosynthesis I | 4 | 4 | 1 |
| phosphopantothenate biosynthesis III (archaea) | 4 | 2 | 1 |
| superpathway of coenzyme A biosynthesis I (bacteria) | 9 | 9 | 1 |
| superpathway of coenzyme A biosynthesis II (plants) | 10 | 9 | 1 |