Experiment set17IT063 for Pseudomonas stutzeri RCH2

Compare to:

LB with 1-ethyl-3-methylimidazolium acetate 40 mM

200 most important genes:

  gene name fitness t score description  
Psest_3531 -4.9 -1.9 Peptidase propeptide and YPEB domain. compare
Psest_2566 -3.6 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_1991 -3.5 -13.7 Glutathione S-transferase compare
Psest_1663 -3.5 -3.9 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_2945 -3.5 -1.7 septum site-determining protein MinC compare
Psest_3862 -3.3 -13.6 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0259 -3.1 -1.3 cell division ATP-binding protein FtsE compare
Psest_3129 -3.1 -1.3 tyrosine recombinase XerD compare
Psest_1012 -3.1 -4.7 Signal transduction histidine kinase compare
Psest_2333 -2.9 -1.1 Protein of unknown function (DUF3359). compare
Psest_3092 -2.8 -2.3 ribonuclease III, bacterial compare
Psest_4406 -2.8 -1.4 hypothetical protein compare
Psest_0449 -2.8 -12.4 Glutamine synthetase adenylyltransferase compare
Psest_3317 -2.7 -4.5 Phosphotransferase System HPr (HPr) Family compare
Psest_0542 -2.6 -9.2 AMP nucleosidase compare
Psest_3926 -2.6 -13.8 GTP-binding protein TypA/BipA compare
Psest_0520 -2.6 -0.8 hypothetical protein compare
Psest_1686 -2.4 -4.8 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0725 -2.3 -2.1 Negative regulator of beta-lactamase expression compare
Psest_3047 -2.3 -0.9 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_3351 -2.3 -6.3 peptide chain release factor 3 compare
Psest_0398 -2.3 -7.8 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_1804 -2.1 -2.0 Superfamily II DNA and RNA helicases compare
Psest_0487 -2.1 -3.6 Uncharacterized protein conserved in bacteria compare
Psest_1990 -2.0 -2.4 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Psest_2946 -2.0 -3.5 septum site-determining protein MinD compare
Psest_2726 -2.0 -1.4 Rhodanese-related sulfurtransferase compare
Psest_2325 -2.0 -8.8 alpha-L-glutamate ligase-related protein compare
Psest_2764 -2.0 -1.2 hypothetical protein compare
Psest_0028 -2.0 -5.1 Coproporphyrinogen III oxidase compare
Psest_3301 -2.0 -3.1 Predicted transcriptional regulator, BolA superfamily compare
Psest_4310 -1.9 -1.7 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_1167 -1.9 -1.0 hypothetical protein compare
Psest_3960 -1.9 -1.2 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_2095 -1.9 -7.7 Arabinose efflux permease compare
Psest_1772 -1.9 -3.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0310 -1.9 -3.7 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_1814 -1.8 -10.5 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1417 -1.8 -1.0 hypothetical protein compare
Psest_1750 -1.8 -2.5 Protein of unknown function (DUF2802). compare
Psest_2488 -1.8 -4.8 Predicted membrane protein compare
Psest_1305 -1.7 -2.0 Heat shock protein compare
Psest_1486 -1.7 -2.9 hypothetical protein compare
Psest_1805 -1.7 -1.8 integration host factor, beta subunit compare
Psest_2768 -1.7 -2.2 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_0260 -1.7 -1.5 Cell division protein compare
Psest_4191 -1.7 -3.0 Transcriptional regulator compare
Psest_3670 -1.7 -8.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_3306 -1.7 -4.3 conserved hypothetical integral membrane protein compare
Psest_4219 -1.6 -2.6 DNA polymerase I compare
Psest_1660 -1.6 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_2324 -1.6 -11.4 hypothetical protein compare
Psest_3458 -1.6 -2.1 hypothetical protein compare
Psest_2585 -1.6 -0.8 pseudouridylate synthase I compare
Psest_4343 -1.6 -2.1 Protein of unknown function (DUF3301). compare
Psest_1087 -1.6 -1.0 uncharacterized peroxidase-related enzyme compare
Psest_0161 -1.6 -1.9 Membrane-bound metallopeptidase compare
Psest_2772 -1.6 -3.9 MIP family channel proteins compare
Psest_1905 -1.6 -2.6 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_3270 -1.6 -2.0 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_1704 -1.6 -0.9 Dehydrogenases (flavoproteins) compare
Psest_1048 -1.6 -6.0 Uncharacterized paraquat-inducible protein A compare
Psest_3449 -1.5 -1.9 DJ-1 family protein compare
Psest_0498 -1.5 -1.3 ribosome small subunit-dependent GTPase A compare
Psest_4051 -1.5 -2.3 molybdenum-pterin binding domain compare
Psest_3850 -1.5 -0.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3231 -1.5 -2.0 hypothetical protein compare
Psest_4103 -1.5 -1.4 AraC-type DNA-binding domain-containing proteins compare
Psest_2446 -1.5 -2.1 acetyl-CoA acetyltransferases compare
Psest_0376 -1.4 -2.8 glucarate dehydratase compare
Psest_0508 -1.4 -4.9 gamma-glutamyl phosphate reductase compare
Psest_0442 -1.4 -3.2 ATPases of the AAA+ class compare
Psest_4098 -1.4 -2.6 Superfamily I DNA and RNA helicases compare
Psest_2773 -1.4 -5.1 glycerol kinase compare
Psest_3377 -1.4 -0.9 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3100 -1.4 -1.6 RNA polymerase sigma factor RpoE compare
Psest_3546 -1.3 -0.9 Phosphatidylglycerophosphatase A and related proteins compare
Psest_3890 -1.3 -1.0 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_0218 -1.3 -2.4 Acyl-CoA hydrolase compare
Psest_2018 -1.3 -2.0 Uncharacterized conserved protein compare
Psest_3123 -1.3 -1.9 dihydroorotase, homodimeric type compare
Psest_1111 -1.2 -2.6 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_2953 -1.2 -1.0 Histone acetyltransferase compare
Psest_1563 -1.2 -1.9 Protein of unknown function (DUF548). compare
Psest_2520 -1.2 -1.4 Predicted SAM-dependent methyltransferase compare
Psest_4080 -1.2 -3.5 Carbonic anhydrase compare
Psest_0187 -1.2 -2.9 Metal-dependent hydrolase compare
Psest_4113 -1.2 -6.7 hypothetical protein compare
Psest_3014 -1.2 -1.3 cob(I)alamin adenosyltransferase compare
Psest_1863 -1.2 -2.0 hypothetical protein compare
Psest_1284 -1.2 -4.4 exodeoxyribonuclease VII, large subunit compare
Psest_1050 -1.2 -7.8 Paraquat-inducible protein B compare
Psest_3961 -1.2 -3.1 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
Psest_0191 -1.2 -0.7 PAS domain S-box compare
Psest_2744 -1.2 -1.0 Uncharacterized conserved protein compare
Psest_4393 -1.2 -3.4 Capsule polysaccharide export protein compare
Psest_1700 -1.2 -2.5 Transcriptional regulator compare
Psest_3146 -1.2 -0.9 hypothetical protein compare
Psest_0309 -1.1 -0.8 RND family efflux transporter, MFP subunit compare
Psest_1613 -1.1 -4.3 hypothetical protein compare
Psest_0440 -1.1 -2.2 hypothetical protein compare
Psest_0533 -1.1 -2.9 Sel1 repeat. compare
Psest_0515 -1.1 -2.8 rare lipoprotein A compare
Psest_2724 -1.1 -1.6 hypothetical protein compare
Psest_0820 -1.1 -2.7 hypothetical protein compare
Psest_2975 -1.1 -1.8 tRNA_Arg_CCT compare
Psest_2304 -1.1 -0.8 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1837 -1.1 -3.9 Endoglucanase compare
Psest_4303 -1.1 -1.0 HEAT repeat. compare
Psest_1884 -1.1 -1.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3042 -1.1 -0.8 Nitrate reductase cytochrome c-type subunit compare
Psest_1366 -1.1 -1.2 hypothetical protein compare
Psest_3838 -1.1 -1.9 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_0537 -1.0 -1.2 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_3921 -1.0 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_0060 -1.0 -1.8 Predicted Fe-S protein compare
Psest_3810 -1.0 -0.7 orotate phosphoribosyltransferase compare
Psest_1510 -1.0 -2.1 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3476 -1.0 -1.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1574 -1.0 -2.2 phenazine biosynthesis protein PhzF family compare
Psest_0482 -1.0 -2.7 yqiA-like hydrolase, affects the cell envelope (from data) compare
Psest_0141 -1.0 -1.9 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_2001 -1.0 -1.0 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3128 -1.0 -1.7 Protein-disulfide isomerase compare
Psest_1947 -1.0 -0.7 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0969 -1.0 -0.9 transcription elongation factor GreA compare
Psest_3148 -1.0 -0.7 hypothetical protein compare
Psest_0697 -1.0 -1.4 ribosomal protein L9 compare
Psest_3761 -1.0 -1.9 Transcription elongation factor compare
Psest_4088 -1.0 -2.6 Transcriptional regulators compare
Psest_1724 -1.0 -1.8 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0320 -1.0 -1.9 ABC-type multidrug transport system, ATPase component compare
Psest_3303 -1.0 -3.0 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2532 -1.0 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_4201 -1.0 -1.4 general secretion pathway protein F compare
Psest_0822 -1.0 -2.4 Transcriptional regulators compare
Psest_3304 -0.9 -2.9 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_2285 -0.9 -2.2 ATP-dependent protease La compare
Psest_1597 -0.9 -2.1 Protein of unknown function (DUF2933). compare
Psest_0673 -0.9 -2.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_1115 -0.9 -1.3 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_4044 -0.9 -2.6 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1812 -0.9 -3.5 pseudaminic acid CMP-transferase compare
Psest_2017 -0.9 -2.0 Predicted acyltransferase compare
Psest_2719 -0.9 -1.2 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_3122 -0.9 -2.1 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3305 -0.9 -4.7 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_0284 -0.9 -5.7 pyridoxal phosphate enzyme, YggS family compare
Psest_4274 -0.9 -1.9 hypothetical protein compare
Psest_2864 -0.9 -2.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0662 -0.9 -1.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0759 -0.9 -0.9 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_2384 -0.9 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_4100 -0.9 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_2405 -0.9 -1.2 NAD-dependent protein deacetylases, SIR2 family compare
Psest_3419 -0.9 -3.2 Predicted transcriptional regulators compare
Psest_3938 -0.9 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_1496 -0.9 -0.7 Holliday junction DNA helicase, RuvA subunit compare
Psest_3215 -0.9 -1.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Psest_3467 -0.9 -2.9 PAP2 (acid phosphatase) superfamily protein compare
Psest_2673 -0.9 -5.5 Arabinose efflux permease compare
Psest_2323 -0.9 -5.1 Uncharacterized protein conserved in archaea compare
Psest_4271 -0.9 -2.5 Predicted proline hydroxylase compare
Psest_0275 -0.9 -1.7 Protein of unknown function (DUF3392). compare
Psest_1960 -0.9 -1.7 Bacterial protein of unknown function (DUF903). compare
Psest_4258 -0.9 -1.7 ABC-type uncharacterized transport system, auxiliary component compare
Psest_1782 -0.9 -1.2 Predicted transcriptional regulators compare
Psest_1509 -0.9 -3.2 quinolinate synthetase complex, A subunit compare
Psest_2517 -0.9 -2.2 hypothetical protein compare
Psest_3044 -0.9 -3.1 deoxycytidine triphosphate deaminase compare
Psest_1313 -0.8 -1.0 Uncharacterized conserved small protein compare
Psest_1325 -0.8 -2.9 Molecular chaperone compare
Psest_3178 -0.8 -1.9 formyltetrahydrofolate deformylase compare
Psest_0842 -0.8 -1.0 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_2023 -0.8 -1.7 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_4126 -0.8 -1.1 Predicted peroxiredoxins compare
Psest_2454 -0.8 -0.8 Rhodanese-related sulfurtransferase compare
Psest_3399 -0.8 -0.7 Uncharacterized protein conserved in bacteria compare
Psest_0237 -0.8 -1.4 intracellular protease, PfpI family compare
Psest_0696 -0.8 -2.7 hypothetical protein compare
Psest_0857 -0.8 -0.8 Membrane transporters of cations and cationic drugs compare
Psest_0547 -0.8 -1.2 Urease accessory protein UreF compare
Psest_3944 -0.8 -2.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_4177 -0.8 -1.1 flagellar biosynthetic protein FliP compare
Psest_1860 -0.8 -1.8 Uncharacterized conserved protein compare
Psest_3307 -0.8 -4.3 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0073 -0.8 -2.4 ABC-type multidrug transport system, ATPase and permease components compare
Psest_3272 -0.8 -2.5 TIGR00252 family protein compare
Psest_2714 -0.8 -1.2 7-cyano-7-deazaguanine reductase compare
Psest_1868 -0.8 -2.9 yecA family protein compare
Psest_0886 -0.8 -2.6 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_4128 -0.8 -0.7 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_0021 -0.8 -1.9 ribosomal RNA small subunit methyltransferase RsmB compare
Psest_0357 -0.8 -1.3 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4081 -0.8 -3.1 Glutaminase (EC 3.5.1.2) (from data) compare
Psest_3507 -0.8 -1.3 FOG: EAL domain compare
Psest_3365 -0.8 -2.2 Predicted membrane protein compare
Psest_0294 -0.8 -2.5 Putative transcriptional regulator compare
Psest_3060 -0.8 -1.4 hypothetical protein compare
Psest_1082 -0.8 -0.9 Enoyl-CoA hydratase/carnithine racemase compare


Specific Phenotypes

For 3 genes in this experiment

For stress 1-ethyl-3-methylimidazolium acetate in Pseudomonas stutzeri RCH2

For stress 1-ethyl-3-methylimidazolium acetate across organisms