Experiment set17IT062 for Pseudomonas stutzeri RCH2

Compare to:

LB with 1-ethyl-3-methylimidazolium acetate 20 mM

200 most important genes:

  gene name fitness t score description  
Psest_1663 -4.1 -3.9 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3338 -3.2 -2.1 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_0028 -3.2 -6.1 Coproporphyrinogen III oxidase compare
Psest_1999 -2.5 -1.4 pseudouridine synthase compare
Psest_2122 -2.5 -1.3 Parvulin-like peptidyl-prolyl isomerase compare
Psest_0725 -2.5 -2.5 Negative regulator of beta-lactamase expression compare
Psest_0498 -2.4 -2.1 ribosome small subunit-dependent GTPase A compare
Psest_2023 -2.4 -4.5 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_3148 -2.2 -1.2 hypothetical protein compare
Psest_2946 -2.1 -3.5 septum site-determining protein MinD compare
Psest_4274 -2.0 -3.2 hypothetical protein compare
Psest_3960 -2.0 -1.4 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0013 -2.0 -5.7 Lauroyl/myristoyl acyltransferase compare
Psest_2590 -2.0 -1.1 3-isopropylmalate dehydratase, small subunit compare
Psest_1510 -2.0 -3.6 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3317 -1.9 -4.5 Phosphotransferase System HPr (HPr) Family compare
Psest_3351 -1.9 -6.1 peptide chain release factor 3 compare
Psest_1772 -1.8 -4.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_4191 -1.8 -3.8 Transcriptional regulator compare
Psest_1920 -1.8 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_0759 -1.7 -1.5 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_3301 -1.7 -2.6 Predicted transcriptional regulator, BolA superfamily compare
Psest_3862 -1.7 -10.8 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2530 -1.7 -4.9 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_0191 -1.7 -0.9 PAS domain S-box compare
Psest_3100 -1.7 -1.1 RNA polymerase sigma factor RpoE compare
Psest_4219 -1.6 -3.2 DNA polymerase I compare
Psest_1879 -1.6 -2.6 Trk-type K+ transport systems, membrane components compare
Psest_3146 -1.6 -1.2 hypothetical protein compare
Psest_1656 -1.6 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2285 -1.6 -3.6 ATP-dependent protease La compare
Psest_1657 -1.6 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0520 -1.6 -0.7 hypothetical protein compare
Psest_3331 -1.6 -3.2 rare lipoprotein A compare
Psest_2901 -1.6 -1.7 hypothetical protein compare
Psest_2872 -1.6 -2.0 protein RecA compare
Psest_1814 -1.5 -8.9 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0164 -1.5 -0.8 Glutaredoxin, GrxC family compare
Psest_3954 -1.5 -3.2 Small protein A (tmRNA-binding) compare
Psest_1306 -1.5 -1.6 hypothetical protein compare
Psest_2945 -1.4 -1.3 septum site-determining protein MinC compare
Psest_2976 -1.4 -1.1 hypothetical protein compare
Psest_0309 -1.4 -1.1 RND family efflux transporter, MFP subunit compare
Psest_0212 -1.4 -1.6 exodeoxyribonuclease V, gamma subunit compare
Psest_3784 -1.4 -2.3 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_4044 -1.4 -2.5 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1863 -1.4 -2.5 hypothetical protein compare
Psest_0958 -1.4 -4.8 Oligoketide cyclase/lipid transport protein compare
Psest_3926 -1.4 -8.5 GTP-binding protein TypA/BipA compare
Psest_3496 -1.4 -1.5 Predicted metal-binding protein compare
Psest_0487 -1.3 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_3480 -1.3 -2.3 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_0514 -1.3 -4.5 lytic murein transglycosylase B compare
Psest_3890 -1.3 -1.5 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_0998 -1.3 -2.3 poly(A) polymerase compare
Psest_3168 -1.3 -1.9 Molybdopterin converting factor, large subunit compare
Psest_4335 -1.3 -1.5 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_1804 -1.3 -2.0 Superfamily II DNA and RNA helicases compare
Psest_2025 -1.3 -0.8 cold shock domain protein CspD compare
Psest_1661 -1.3 -1.8 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_2711 -1.3 -2.5 PilZ domain. compare
Psest_3070 -1.3 -2.0 3-oxoadipyl-CoA thiolase compare
Psest_3546 -1.3 -1.0 Phosphatidylglycerophosphatase A and related proteins compare
Psest_2579 -1.2 -4.6 amidophosphoribosyltransferase compare
Psest_2018 -1.2 -2.0 Uncharacterized conserved protein compare
Psest_0511 -1.2 -1.4 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_2001 -1.2 -1.3 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_1293 -1.2 -1.2 VanZ like family. compare
Psest_3044 -1.2 -4.4 deoxycytidine triphosphate deaminase compare
Psest_1227 -1.2 -2.1 Predicted SAM-dependent methyltransferase compare
Psest_3456 -1.2 -1.2 RNA polymerase sigma factor, sigma-70 family compare
Psest_1601 -1.2 -1.6 Signal transduction histidine kinase compare
Psest_1489 -1.2 -2.1 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_0534 -1.2 -2.9 hypothetical protein compare
Psest_3045 -1.2 -1.4 Cold shock proteins compare
Psest_3938 -1.2 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_3391 -1.2 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_2527 -1.2 -5.0 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_1204 -1.2 -2.4 Transcriptional regulators compare
Psest_0067 -1.2 -1.6 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_2520 -1.2 -1.5 Predicted SAM-dependent methyltransferase compare
Psest_1724 -1.2 -2.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1700 -1.2 -3.6 Transcriptional regulator compare
Psest_0717 -1.1 -8.4 Protein of unknown function (DUF1631). compare
Psest_0950 -1.1 -2.7 hypothetical protein compare
Psest_3395 -1.1 -0.9 hypothetical protein compare
Psest_1313 -1.1 -1.5 Uncharacterized conserved small protein compare
Psest_3816 -1.1 -0.9 DNA-directed RNA polymerase, omega subunit compare
Psest_1179 -1.1 -1.3 2-hydroxy-3-oxopropionate reductase compare
Psest_1986 -1.1 -1.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_3865 -1.0 -2.5 Predicted integral membrane protein (DUF2269). compare
Psest_2543 -1.0 -3.2 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_2322 -1.0 -3.2 Transcriptional regulators compare
Psest_1322 -1.0 -1.5 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_1947 -1.0 -0.7 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0401 -1.0 -2.0 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_2645 -1.0 -4.3 Transcriptional regulator compare
Psest_0845 -1.0 -0.7 hypothetical protein compare
Psest_1087 -1.0 -0.9 uncharacterized peroxidase-related enzyme compare
Psest_0722 -1.0 -3.8 Predicted ATPase compare
Psest_4325 -1.0 -1.7 hypothetical protein compare
Psest_2622 -1.0 -2.0 TadE-like protein. compare
Psest_3790 -1.0 -5.3 Cytochrome c5 compare
Psest_3478 -1.0 -0.8 Cytochrome B561 compare
Psest_2308 -1.0 -0.7 Predicted Fe-S protein compare
Psest_2749 -1.0 -2.6 Predicted transcriptional regulators compare
Psest_1303 -0.9 -2.2 hypothetical protein compare
Psest_2887 -0.9 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_2773 -0.9 -4.3 glycerol kinase compare
Psest_3697 -0.9 -1.3 Outer membrane lipoprotein carrier protein LolA. compare
Psest_3459 -0.9 -2.7 hypothetical protein compare
Psest_3426 -0.9 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_1782 -0.9 -1.7 Predicted transcriptional regulators compare
Psest_2101 -0.9 -1.2 hypothetical protein compare
Psest_4134 -0.9 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_3322 -0.9 -6.6 TIGR02099 family protein compare
Psest_4090 -0.9 -3.2 diaminobutyrate acetyltransferase compare
Psest_1186 -0.9 -3.2 heavy metal sensor kinase compare
Psest_2719 -0.9 -1.5 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_0508 -0.9 -3.7 gamma-glutamyl phosphate reductase compare
Psest_2651 -0.9 -2.5 DNA topoisomerase I, bacterial compare
Psest_0398 -0.9 -2.9 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_4338 -0.9 -2.6 Fe2+-dicitrate sensor, membrane component compare
Psest_1660 -0.9 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1206 -0.9 -2.0 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_0533 -0.9 -2.4 Sel1 repeat. compare
Psest_0919 -0.9 -1.0 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_2757 -0.9 -0.7 hypothetical protein compare
Psest_2325 -0.9 -4.0 alpha-L-glutamate ligase-related protein compare
Psest_3354 -0.9 -2.6 1-phosphofructokinase (EC 2.7.1.56) (from data) compare
Psest_1800 -0.8 -3.5 anion transporter compare
Psest_2778 -0.8 -1.6 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1750 -0.8 -1.5 Protein of unknown function (DUF2802). compare
Psest_1498 -0.8 -1.7 tol-pal system-associated acyl-CoA thioesterase compare
Psest_0442 -0.8 -2.2 ATPases of the AAA+ class compare
Psest_4307 -0.8 -1.7 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_2531 -0.8 -5.6 cytochrome c oxidase accessory protein FixG compare
Psest_4010 -0.8 -0.8 peroxiredoxin, OsmC subfamily compare
Psest_2104 -0.8 -0.9 IscR-regulated protein YhgI compare
Psest_0691 -0.8 -4.9 ribonuclease R compare
Psest_1279 -0.8 -1.8 hypothetical protein compare
Psest_0174 -0.8 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_0145 -0.8 -2.2 A/G-specific adenine glycosylase compare
Psest_3754 -0.8 -2.4 Uncharacterized protein involved in response to NO compare
Psest_0718 -0.8 -2.0 nicotinate-nucleotide pyrophosphorylase compare
Psest_2975 -0.8 -1.0 tRNA_Arg_CCT compare
Psest_2062 -0.8 -1.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0740 -0.8 -1.6 Transcriptional regulator compare
Psest_3084 -0.8 -1.4 methyltransferase, putative compare
Psest_3129 -0.8 -0.7 tyrosine recombinase XerD compare
Psest_4054 -0.8 -1.4 alkanesulfonate monooxygenase, FMNH(2)-dependent compare
Psest_3752 -0.8 -1.9 hypothetical protein compare
Psest_0485 -0.8 -1.7 clan AA aspartic protease, TIGR02281 family compare
Psest_0542 -0.8 -4.2 AMP nucleosidase compare
Psest_1013 -0.8 -2.0 phosphoribosylamine--glycine ligase compare
Psest_1012 -0.8 -2.1 Signal transduction histidine kinase compare
Psest_2752 -0.8 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_4009 -0.8 -2.5 conserverd hypothetical protein compare
Psest_1147 -0.8 -2.3 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2324 -0.8 -5.4 hypothetical protein compare
Psest_2605 -0.8 -1.6 transcriptional activator RfaH compare
Psest_3001 -0.8 -2.6 molybdenum ABC transporter, ATP-binding protein compare
Psest_3921 -0.8 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_3228 -0.8 -4.0 Zn-dependent protease with chaperone function compare
Psest_1058 -0.8 -1.2 ribosomal-protein-alanine acetyltransferase compare
Psest_1207 -0.8 -2.9 ABC-type metal ion transport system, periplasmic component/surface adhesin compare
Psest_2594 -0.8 -1.9 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0097 -0.7 -1.1 phosphonates metabolism transcriptional regulator PhnF compare
Psest_0466 -0.7 -1.7 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1644 -0.7 -2.8 Erythromycin esterase homolog compare
Psest_2791 -0.7 -1.4 hypothetical protein compare
Psest_4350 -0.7 -2.5 Transcriptional regulators of sugar metabolism compare
Psest_3987 -0.7 -2.8 Nitroreductase compare
Psest_3766 -0.7 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_3803 -0.7 -0.8 DNA repair protein radc compare
Psest_2566 -0.7 -0.6 Uncharacterized protein conserved in bacteria compare
Psest_1029 -0.7 -1.4 Regulator of competence-specific genes compare
Psest_4273 -0.7 -3.3 Lysophospholipase compare
Psest_1408 -0.7 -2.4 Predicted unusual protein kinase compare
Psest_2370 -0.7 -1.8 Protein of unknown function (DUF1652). compare
Psest_4149 -0.7 -1.5 fagellar hook-basal body proteins compare
Psest_3123 -0.7 -1.5 dihydroorotase, homodimeric type compare
Psest_3206 -0.7 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_0988 -0.7 -1.0 Protein of unknown function (DUF2845). compare
Psest_1270 -0.7 -2.5 hypothetical protein compare
Psest_1913 -0.7 -2.7 Transcriptional regulator compare
Psest_3991 -0.7 -1.4 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_0521 -0.7 -3.7 lytic murein transglycosylase compare
Psest_1525 -0.7 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_3458 -0.7 -1.2 hypothetical protein compare
Psest_0260 -0.7 -0.9 Cell division protein compare
Psest_3080 -0.7 -1.1 AraC-type DNA-binding domain-containing proteins compare
Psest_4008 -0.7 -5.2 PAS domain S-box compare
Psest_2384 -0.7 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_0161 -0.7 -1.2 Membrane-bound metallopeptidase compare
Psest_2323 -0.7 -4.4 Uncharacterized protein conserved in archaea compare
Psest_3159 -0.7 -2.9 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1551 -0.7 -1.6 Integral membrane protein, interacts with FtsH compare
Psest_1115 -0.7 -1.7 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_1717 -0.7 -1.5 benzoate transporter compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in stress experiments

For stress 1-ethyl-3-methylimidazolium acetate across organisms