Experiment set17IT061 for Pseudomonas stutzeri RCH2

Compare to:

LB with Sodium acetate 80 mM

200 most important genes:

  gene name fitness t score description  
Psest_0309 -4.4 -1.8 RND family efflux transporter, MFP subunit compare
Psest_1663 -4.0 -3.9 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0542 -3.5 -10.8 AMP nucleosidase compare
Psest_2945 -3.5 -1.9 septum site-determining protein MinC compare
Psest_3960 -3.4 -1.9 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1752 -2.8 -2.1 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_0212 -2.6 -3.2 exodeoxyribonuclease V, gamma subunit compare
Psest_2333 -2.5 -1.2 Protein of unknown function (DUF3359). compare
Psest_0708 -2.5 -2.0 outer membrane assembly lipoprotein YfiO compare
Psest_3670 -2.5 -11.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_2123 -2.4 -2.3 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_3014 -2.3 -2.4 cob(I)alamin adenosyltransferase compare
Psest_1496 -2.3 -1.6 Holliday junction DNA helicase, RuvA subunit compare
Psest_3862 -2.2 -11.9 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3301 -2.2 -3.7 Predicted transcriptional regulator, BolA superfamily compare
Psest_0191 -2.2 -1.0 PAS domain S-box compare
Psest_2325 -2.2 -11.5 alpha-L-glutamate ligase-related protein compare
Psest_0998 -2.1 -2.9 poly(A) polymerase compare
Psest_1661 -2.1 -2.0 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3565 -2.1 -2.0 hypothetical protein compare
Psest_3070 -2.0 -2.9 3-oxoadipyl-CoA thiolase compare
Psest_1660 -2.0 -2.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3317 -1.9 -5.2 Phosphotransferase System HPr (HPr) Family compare
Psest_2324 -1.9 -12.8 hypothetical protein compare
Psest_3351 -1.9 -6.4 peptide chain release factor 3 compare
Psest_3400 -1.9 -1.4 Copper resistance protein D. compare
Psest_4191 -1.8 -3.2 Transcriptional regulator compare
Psest_1679 -1.8 -1.6 ribonuclease, Rne/Rng family compare
Psest_0013 -1.8 -5.4 Lauroyl/myristoyl acyltransferase compare
Psest_3926 -1.7 -9.2 GTP-binding protein TypA/BipA compare
Psest_1417 -1.7 -1.3 hypothetical protein compare
Psest_4286 -1.7 -9.4 Glutamine synthetase compare
Psest_2229 -1.7 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_2651 -1.7 -4.6 DNA topoisomerase I, bacterial compare
Psest_3039 -1.7 -1.6 periplasmic nitrate reductase, NapE protein compare
Psest_2001 -1.6 -1.1 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_0060 -1.6 -2.6 Predicted Fe-S protein compare
Psest_1814 -1.6 -9.7 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0515 -1.6 -3.1 rare lipoprotein A compare
Psest_0520 -1.6 -0.7 hypothetical protein compare
Psest_0133 -1.6 -1.5 type VI secretion protein, VC_A0107 family compare
Psest_1804 -1.5 -2.0 Superfamily II DNA and RNA helicases compare
Psest_0514 -1.5 -4.8 lytic murein transglycosylase B compare
Psest_2304 -1.5 -1.0 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_3100 -1.5 -1.4 RNA polymerase sigma factor RpoE compare
Psest_0823 -1.5 -2.9 Transcriptional regulators compare
Psest_1655 -1.5 -3.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3573 -1.4 -3.5 dTDP-4-dehydrorhamnose reductase compare
Psest_2712 -1.4 -3.9 Surface lipoprotein compare
Psest_0872 -1.4 -1.2 Helix-turn-helix. compare
Psest_4044 -1.4 -2.2 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3307 -1.4 -5.9 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1463 -1.4 -1.0 SufE protein probably involved in Fe-S center assembly compare
Psest_0737 -1.4 -0.9 Cu(I)-responsive transcriptional regulator compare
Psest_0919 -1.4 -1.9 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_0257 -1.4 -2.4 Predicted Zn-dependent peptidases compare
Psest_4338 -1.4 -3.3 Fe2+-dicitrate sensor, membrane component compare
Psest_0533 -1.4 -3.5 Sel1 repeat. compare
Psest_1012 -1.4 -3.6 Signal transduction histidine kinase compare
Psest_3455 -1.4 -2.2 Dihaem cytochrome c. compare
Psest_2566 -1.4 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_0466 -1.3 -3.8 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0691 -1.3 -7.1 ribonuclease R compare
Psest_1510 -1.3 -2.9 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0457 -1.3 -2.5 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_4100 -1.3 -2.9 Uncharacterized protein conserved in bacteria compare
Psest_4335 -1.3 -1.8 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_3159 -1.3 -4.6 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1991 -1.3 -7.1 Glutathione S-transferase compare
Psest_3531 -1.3 -1.3 Peptidase propeptide and YPEB domain. compare
Psest_4274 -1.3 -2.0 hypothetical protein compare
Psest_1824 -1.3 -2.6 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_2648 -1.3 -2.2 hypothetical protein compare
Psest_2581 -1.3 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_1656 -1.3 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0717 -1.3 -9.3 Protein of unknown function (DUF1631). compare
Psest_3662 -1.2 -2.3 DnaJ-domain-containing proteins 1 compare
Psest_1468 -1.2 -2.4 hypothetical protein compare
Psest_2023 -1.2 -3.0 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_3008 -1.2 -2.5 cobyric acid synthase CobQ compare
Psest_1986 -1.2 -1.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_0385 -1.2 -1.6 Conserved secreted protein compare
Psest_2110 -1.2 -2.5 hypothetical protein compare
Psest_1805 -1.2 -1.6 integration host factor, beta subunit compare
Psest_4406 -1.2 -1.0 hypothetical protein compare
Psest_2067 -1.2 -0.9 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0218 -1.2 -2.6 Acyl-CoA hydrolase compare
Psest_2066 -1.2 -1.6 ABC-type uncharacterized transport system, permease component compare
Psest_0587 -1.1 -3.1 Domain of Unknown Function (DUF326). compare
Psest_2647 -1.1 -1.7 SOS-response cell division inhibitor, blocks FtsZ ring formation compare
Psest_0028 -1.1 -2.8 Coproporphyrinogen III oxidase compare
Psest_2899 -1.1 -1.2 hypothetical protein compare
Psest_4170 -1.1 -1.3 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_0346 -1.1 -1.5 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_4128 -1.1 -1.3 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_2766 -1.1 -0.8 hypothetical protein compare
Psest_3731 -1.1 -6.8 exopolyphosphatase compare
Psest_2772 -1.1 -3.2 MIP family channel proteins compare
Psest_2590 -1.1 -0.8 3-isopropylmalate dehydratase, small subunit compare
Psest_3693 -1.1 -1.8 Glycosyltransferases involved in cell wall biogenesis compare
Psest_0857 -1.1 -1.5 Membrane transporters of cations and cationic drugs compare
Psest_3399 -1.1 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_3044 -1.1 -4.5 deoxycytidine triphosphate deaminase compare
Psest_0449 -1.1 -5.2 Glutamine synthetase adenylyltransferase compare
Psest_2532 -1.1 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_1498 -1.1 -1.6 tol-pal system-associated acyl-CoA thioesterase compare
Psest_2852 -1.1 -2.8 Outer membrane lipoprotein compare
Psest_0740 -1.1 -1.7 Transcriptional regulator compare
Psest_3767 -1.1 -3.3 tyrosine recombinase XerC compare
Psest_1659 -1.1 -2.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0487 -1.1 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_3013 -1.1 -1.9 cobyrinic acid a,c-diamide synthase compare
Psest_3795 -1.0 -4.0 Glycine/D-amino acid oxidases (deaminating) compare
Psest_0722 -1.0 -4.5 Predicted ATPase compare
Psest_0186 -1.0 -3.3 Protein-disulfide isomerase compare
Psest_2323 -1.0 -6.1 Uncharacterized protein conserved in archaea compare
Psest_2585 -1.0 -0.7 pseudouridylate synthase I compare
Psest_3367 -1.0 -1.1 translation initation factor SUI1, putative, prokaryotic compare
Psest_1657 -1.0 -1.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1227 -1.0 -2.3 Predicted SAM-dependent methyltransferase compare
Psest_2698 -1.0 -3.1 benzoate 1,2-dioxygenase, small subunit compare
Psest_1305 -1.0 -1.9 Heat shock protein compare
Psest_2520 -1.0 -1.3 Predicted SAM-dependent methyltransferase compare
Psest_4098 -1.0 -2.3 Superfamily I DNA and RNA helicases compare
Psest_0725 -1.0 -1.4 Negative regulator of beta-lactamase expression compare
Psest_0281 -1.0 -5.0 Dynamin family. compare
Psest_1595 -1.0 -1.0 Copper chaperone compare
Psest_0310 -1.0 -1.9 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3305 -1.0 -4.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_1504 -1.0 -2.9 tol-pal system protein YbgF compare
Psest_2872 -1.0 -1.3 protein RecA compare
Psest_3106 -1.0 -3.8 Predicted outer membrane protein compare
Psest_4095 -1.0 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_1540 -1.0 -1.1 biotin-dependent carboxylase uncharacterized domain compare
Psest_1813 -1.0 -5.0 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2773 -1.0 -4.1 glycerol kinase compare
Psest_3306 -1.0 -3.1 conserved hypothetical integral membrane protein compare
Psest_0114 -0.9 -2.2 RNA polymerase sigma factor, sigma-70 family compare
Psest_2232 -0.9 -6.8 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_4178 -0.9 -2.5 hypothetical protein compare
Psest_3323 -0.9 -3.4 ribonuclease, Rne/Rng family compare
Psest_3700 -0.9 -0.8 hypothetical protein compare
Psest_1371 -0.9 -1.8 hypothetical protein compare
Psest_0845 -0.9 -0.6 hypothetical protein compare
Psest_3777 -0.9 -1.6 diguanylate cyclase (GGDEF) domain compare
Psest_1686 -0.9 -2.1 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0516 -0.9 -3.6 D-alanyl-D-alanine carboxypeptidase compare
Psest_1535 -0.9 -3.5 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
Psest_1082 -0.9 -1.1 Enoyl-CoA hydratase/carnithine racemase compare
Psest_1647 -0.9 -2.1 Lhr-like helicases compare
Psest_0192 -0.9 -3.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1281 -0.9 -4.1 Small-conductance mechanosensitive channel compare
Psest_3228 -0.9 -4.4 Zn-dependent protease with chaperone function compare
Psest_1282 -0.9 -1.4 Amidases related to nicotinamidase compare
Psest_0732 -0.9 -2.8 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_0061 -0.9 -1.1 hypothetical protein compare
Psest_0485 -0.9 -2.2 clan AA aspartic protease, TIGR02281 family compare
Psest_1457 -0.9 -1.3 FOG: Ankyrin repeat compare
Psest_0050 -0.9 -2.1 Predicted acetyltransferase compare
Psest_1013 -0.9 -2.2 phosphoribosylamine--glycine ligase compare
Psest_1919 -0.9 -1.8 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_2983 -0.8 -1.6 hypothetical protein compare
Psest_3303 -0.8 -3.2 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3953 -0.8 -2.5 Bacterial lipocalin compare
Psest_1912 -0.8 -2.3 Protein of unknown function (DUF1260). compare
Psest_3129 -0.8 -0.7 tyrosine recombinase XerD compare
Psest_0188 -0.8 -3.6 diguanylate cyclase (GGDEF) domain compare
Psest_1819 -0.8 -6.6 Nucleoside-diphosphate-sugar epimerases compare
Psest_4004 -0.8 -1.9 Uncharacterized conserved protein compare
Psest_3519 -0.8 -1.0 Uncharacterized conserved protein compare
Psest_4221 -0.8 -1.8 homoserine kinase, Neisseria type compare
Psest_1197 -0.8 -2.3 Ureidoglycolate hydrolase compare
Psest_0442 -0.8 -2.1 ATPases of the AAA+ class compare
Psest_0922 -0.8 -1.9 alkylhydroperoxidase AhpD family core domain compare
Psest_3545 -0.8 -1.8 clan AA aspartic protease, TIGR02281 family compare
Psest_1242 -0.8 -1.5 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_4154 -0.8 -2.2 flagella basal body P-ring formation protein FlgA compare
Psest_1945 -0.8 -2.4 hypothetical protein compare
Psest_2555 -0.8 -3.7 hypothetical protein compare
Psest_1436 -0.8 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_2322 -0.8 -2.0 Transcriptional regulators compare
Psest_3316 -0.7 -3.0 Predicted P-loop-containing kinase compare
Psest_4142 -0.7 -0.9 hypothetical protein compare
Psest_3865 -0.7 -1.7 Predicted integral membrane protein (DUF2269). compare
Psest_0970 -0.7 -1.5 hypothetical protein compare
Psest_1643 -0.7 -0.7 hypothetical protein compare
Psest_3092 -0.7 -1.1 ribonuclease III, bacterial compare
Psest_1431 -0.7 -1.8 hypothetical protein compare
Psest_1980 -0.7 -2.3 Uncharacterized conserved protein compare
Psest_4363 -0.7 -3.2 ATPases involved in chromosome partitioning compare
Psest_0842 -0.7 -1.1 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_1822 -0.7 -3.7 Glycosyltransferases involved in cell wall biogenesis compare
Psest_2577 -0.7 -3.3 general secretion pathway protein D compare
Psest_1990 -0.7 -1.1 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Psest_1357 -0.7 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_1544 -0.7 -2.9 single-stranded-DNA-specific exonuclease RecJ compare
Psest_3480 -0.7 -1.0 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_3505 -0.7 -2.6 Superfamily II DNA and RNA helicases compare
Psest_1259 -0.7 -2.1 23S rRNA m2A2503 methyltransferase compare
Psest_3304 -0.7 -2.0 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare


Specific Phenotypes

For 2 genes in this experiment

For stress Sodium acetate in Pseudomonas stutzeri RCH2

For stress Sodium acetate across organisms