Experiment set17IT058 for Pseudomonas stutzeri RCH2

Compare to:

LB with Choline chloride 90 mM

200 most important genes:

  gene name fitness t score description  
Psest_2304 -5.4 -1.2 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_2232 -4.9 -15.4 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_3720 -4.5 -23.1 penicillin-binding protein, 1A family compare
Psest_3305 -4.4 -8.4 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_2712 -4.4 -5.9 Surface lipoprotein compare
Psest_3303 -4.3 -5.1 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2095 -4.1 -9.8 Arabinose efflux permease compare
Psest_1103 -3.9 -4.1 GTP-binding protein YchF compare
Psest_1535 -3.8 -5.1 FKBP-type peptidyl-prolyl cis-trans isomerases 1 conserved
Psest_3862 -3.8 -16.1 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2312 -3.7 -10.7 Small-conductance mechanosensitive channel compare
Psest_3307 -3.7 -9.2 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1999 -3.6 -1.3 pseudouridine synthase compare
Psest_3816 -3.5 -1.1 DNA-directed RNA polymerase, omega subunit compare
Psest_2465 -3.5 -6.2 hypothetical protein compare
Psest_3399 -3.5 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_3306 -3.5 -6.9 conserved hypothetical integral membrane protein compare
Psest_0993 -3.5 -9.5 Glucose-6-phosphate isomerase compare
Psest_3212 -3.5 -4.1 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_2066 -3.4 -1.3 ABC-type uncharacterized transport system, permease component compare
Psest_4142 -3.3 -1.7 hypothetical protein compare
Psest_2634 -3.3 -5.3 glycine betaine aldehyde dehydrogenase conserved
Psest_3317 -3.2 -5.0 Phosphotransferase System HPr (HPr) Family compare
Psest_1840 -3.2 -22.2 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_2067 -3.1 -1.3 ABC-type oligopeptide transport system, periplasmic component compare
Psest_2726 -3.1 -1.7 Rhodanese-related sulfurtransferase compare
Psest_0259 -3.1 -1.3 cell division ATP-binding protein FtsE compare
Psest_1692 -3.0 -11.6 conserved hypothetical protein, YceG family compare
Psest_3301 -3.0 -3.5 Predicted transcriptional regulator, BolA superfamily compare
Psest_1486 -2.9 -2.6 hypothetical protein compare
Psest_1473 -2.9 -6.8 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1837 -2.9 -8.8 Endoglucanase compare
Psest_1012 -2.9 -4.4 Signal transduction histidine kinase compare
Psest_2018 -2.8 -3.3 Uncharacterized conserved protein compare
Psest_4219 -2.8 -3.1 DNA polymerase I compare
Psest_1111 -2.7 -3.8 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_4406 -2.7 -1.3 hypothetical protein compare
Psest_0662 -2.7 -2.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0161 -2.7 -2.7 Membrane-bound metallopeptidase compare
Psest_2579 -2.7 -5.4 amidophosphoribosyltransferase compare
Psest_3766 -2.6 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_2581 -2.6 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_3988 -2.6 -6.8 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_2637 -2.6 -1.3 putative methyltransferase, YaeB/AF_0241 family compare
Psest_3850 -2.5 -0.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1532 -2.5 -4.1 DNA recombination-dependent growth factor C compare
Psest_0260 -2.5 -1.6 Cell division protein compare
Psest_1335 -2.5 -11.0 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) compare
Psest_3458 -2.5 -3.5 hypothetical protein compare
Psest_3960 -2.5 -1.4 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_3860 -2.5 -2.5 Predicted permeases compare
Psest_0845 -2.5 -0.9 hypothetical protein compare
Psest_0257 -2.5 -2.5 Predicted Zn-dependent peptidases compare
Psest_2714 -2.5 -2.6 7-cyano-7-deazaguanine reductase compare
Psest_3177 -2.4 -1.6 hypothetical protein compare
Psest_1709 -2.4 -3.0 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1472 -2.4 -8.2 Protein of unknown function (DUF3108). compare
Psest_0461 -2.4 -6.2 Glycosyltransferase involved in LPS biosynthesis compare
Psest_2977 -2.3 -4.7 hypothetical protein compare
Psest_3304 -2.3 -4.6 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_1510 -2.3 -2.7 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3449 -2.2 -2.0 DJ-1 family protein compare
Psest_3531 -2.2 -1.1 Peptidase propeptide and YPEB domain. compare
Psest_1804 -2.2 -1.5 Superfamily II DNA and RNA helicases compare
Psest_1679 -2.1 -1.6 ribonuclease, Rne/Rng family compare
Psest_0725 -2.1 -1.9 Negative regulator of beta-lactamase expression compare
Psest_0515 -2.1 -4.1 rare lipoprotein A compare
Psest_0309 -2.1 -1.3 RND family efflux transporter, MFP subunit compare
Psest_2945 -2.0 -1.3 septum site-determining protein MinC compare
Psest_1506 -2.0 -6.1 queuosine biosynthesis protein QueC compare
Psest_2633 -2.0 -7.8 choline dehydrogenase conserved
Psest_3505 -2.0 -5.0 Superfamily II DNA and RNA helicases compare
Psest_3351 -2.0 -5.8 peptide chain release factor 3 compare
Psest_0846 -2.0 -3.2 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_0844 -2.0 -3.8 High-affinity Fe2+/Pb2+ permease compare
Psest_0311 -2.0 -4.9 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_1952 -2.0 -4.1 hypothetical protein compare
Psest_1873 -2.0 -1.8 Predicted permease, DMT superfamily compare
Psest_3338 -2.0 -1.5 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2379 -2.0 -8.7 PAS domain S-box compare
Psest_0870 -1.9 -6.6 Alpha-glucosidase (EC 3.2.1.20) (from data) compare
Psest_4099 -1.9 -11.3 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component compare
Psest_1462 -1.9 -5.1 3-oxoacyl-[acyl-carrier-protein] synthase III compare
Psest_2023 -1.9 -3.7 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_1249 -1.9 -6.4 serine O-acetyltransferase compare
Psest_0417 -1.8 -1.3 Acyl-CoA dehydrogenases compare
Psest_2085 -1.8 -6.9 Periplasmic serine proteases (ClpP class) compare
Psest_1815 -1.8 -9.2 pseudaminic acid synthase compare
Psest_0718 -1.8 -2.7 nicotinate-nucleotide pyrophosphorylase compare
Psest_0442 -1.8 -1.7 ATPases of the AAA+ class compare
Psest_3910 -1.8 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_2855 -1.8 -1.3 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1292 -1.8 -7.3 monothiol glutaredoxin, Grx4 family compare
Psest_1306 -1.7 -1.7 hypothetical protein compare
Psest_0466 -1.7 -3.1 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0462 -1.7 -14.7 Lipid A core - O-antigen ligase and related enzymes compare
Psest_0172 -1.7 -4.5 Uncharacterized protein conserved in bacteria compare
Psest_2946 -1.7 -3.1 septum site-determining protein MinD compare
Psest_3092 -1.7 -1.6 ribonuclease III, bacterial compare
Psest_0281 -1.7 -6.1 Dynamin family. compare
Psest_0028 -1.6 -4.6 Coproporphyrinogen III oxidase compare
Psest_2772 -1.6 -3.4 MIP family channel proteins compare
Psest_1457 -1.6 -1.5 FOG: Ankyrin repeat compare
Psest_1819 -1.6 -12.1 Nucleoside-diphosphate-sugar epimerases compare
Psest_1505 -1.6 -1.9 Organic radical activating enzymes compare
Psest_3226 -1.6 -0.9 Predicted membrane protein compare
Psest_1491 -1.6 -2.9 Cold shock proteins compare
Psest_4008 -1.6 -8.3 PAS domain S-box compare
Psest_2565 -1.6 -1.7 Transcriptional regulator compare
Psest_4310 -1.6 -1.4 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_0455 -1.6 -5.6 ADP-heptose:LPS heptosyltransferase compare
Psest_3174 -1.6 -10.3 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_2314 -1.6 -5.5 Mg2+ and Co2+ transporters conserved
Psest_0717 -1.6 -9.6 Protein of unknown function (DUF1631). compare
Psest_0398 -1.5 -5.9 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_0062 -1.5 -6.7 tryptophan synthase, alpha subunit compare
Psest_3926 -1.5 -7.4 GTP-binding protein TypA/BipA compare
Psest_0459 -1.5 -7.5 Predicted carbamoyl transferase, NodU family compare
Psest_0852 -1.5 -5.0 glucose-6-phosphate 1-dehydrogenase compare
Psest_2115 -1.5 -4.7 ATPase components of ABC transporters with duplicated ATPase domains compare
Psest_1818 -1.5 -7.5 GDP-mannose 4,6-dehydratase compare
Psest_1919 -1.5 -1.9 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_2613 -1.5 -1.3 hypothetical protein compare
Psest_1013 -1.5 -2.9 phosphoribosylamine--glycine ligase compare
Psest_3745 -1.4 -2.3 Uncharacterized enzyme of heme biosynthesis compare
Psest_0191 -1.4 -0.7 PAS domain S-box compare
Psest_1939 -1.4 -5.5 Tetratricopeptide repeat. compare
Psest_0449 -1.4 -5.3 Glutamine synthetase adenylyltransferase compare
Psest_2285 -1.4 -2.9 ATP-dependent protease La compare
Psest_1279 -1.4 -2.2 hypothetical protein compare
Psest_0437 -1.4 -1.8 hypothetical protein compare
Psest_2752 -1.4 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_3819 -1.4 -2.9 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1822 -1.4 -5.1 Glycosyltransferases involved in cell wall biogenesis compare
Psest_2446 -1.4 -1.9 acetyl-CoA acetyltransferases compare
Psest_1752 -1.3 -1.2 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_3146 -1.3 -1.5 hypothetical protein compare
Psest_0097 -1.3 -1.2 phosphonates metabolism transcriptional regulator PhnF compare
Psest_4100 -1.3 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_2278 -1.3 -2.8 coenzyme PQQ biosynthesis protein PqqD compare
Psest_1704 -1.3 -0.8 Dehydrogenases (flavoproteins) compare
Psest_1474 -1.3 -0.9 phosphoribosylaminoimidazole synthetase compare
Psest_3045 -1.3 -1.5 Cold shock proteins compare
Psest_1943 -1.3 -5.6 MoxR-like ATPases compare
Psest_1496 -1.3 -1.0 Holliday junction DNA helicase, RuvA subunit compare
Psest_1156 -1.3 -4.9 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Psest_2590 -1.3 -0.8 3-isopropylmalate dehydratase, small subunit compare
Psest_3319 -1.3 -4.0 Uncharacterized protein conserved in bacteria compare
Psest_1772 -1.3 -3.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3767 -1.3 -2.3 tyrosine recombinase XerC compare
Psest_1741 -1.3 -1.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4044 -1.3 -0.9 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0276 -1.3 -2.1 putative oxygen-independent coproporphyrinogen III oxidase compare
Psest_3768 -1.3 -3.2 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_3123 -1.3 -0.9 dihydroorotase, homodimeric type compare
Psest_3180 -1.3 -5.4 Exonuclease I compare
Psest_3270 -1.3 -1.4 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_4191 -1.2 -2.0 Transcriptional regulator compare
Psest_2778 -1.2 -1.7 Parvulin-like peptidyl-prolyl isomerase compare
Psest_4320 -1.2 -5.3 Zn-dependent oligopeptidases compare
Psest_2809 -1.2 -1.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_0744 -1.2 -0.7 Uncharacterized conserved protein compare
Psest_0277 -1.2 -0.9 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_2892 -1.2 -1.7 Transcriptional regulator compare
Psest_2253 -1.2 -1.9 small redox-active disulfide protein 2 compare
Psest_0376 -1.2 -2.3 glucarate dehydratase compare
Psest_0503 -1.2 -1.1 Acyl dehydratase compare
Psest_0078 -1.2 -0.9 hypothetical protein compare
Psest_0988 -1.2 -1.9 Protein of unknown function (DUF2845). compare
Psest_1147 -1.1 -2.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1659 -1.1 -2.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3207 -1.1 -3.1 HopJ type III effector protein. compare
Psest_2088 -1.1 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_3159 -1.1 -3.8 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2093 -1.1 -3.3 Leucine Rich Repeat./Protein kinase domain. compare
Psest_1325 -1.1 -2.6 Molecular chaperone compare
Psest_1215 -1.1 -1.7 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_0770 -1.1 -3.3 alkylphosphonate utilization operon protein PhnA compare
Psest_1922 -1.1 -4.7 aminopeptidase N, Escherichia coli type compare
Psest_2160 -1.1 -4.0 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes compare
Psest_1823 -1.1 -5.4 Nucleoside-diphosphate-sugar epimerases compare
Psest_0275 -1.1 -2.2 Protein of unknown function (DUF3392). compare
Psest_3921 -1.1 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_1562 -1.1 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_0795 -1.1 -2.2 ABC-type multidrug transport system, ATPase component compare
Psest_2748 -1.1 -1.2 Transcriptional regulator compare
Psest_3070 -1.1 -1.4 3-oxoadipyl-CoA thiolase compare
Psest_2425 -1.1 -1.6 Trk-type K+ transport systems, membrane components compare
Psest_1142 -1.1 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_0709 -1.0 -4.2 pseudouridine synthase, RluA family compare
Psest_3573 -1.0 -2.3 dTDP-4-dehydrorhamnose reductase compare
Psest_0922 -1.0 -2.0 alkylhydroperoxidase AhpD family core domain compare
Psest_1700 -1.0 -1.6 Transcriptional regulator compare
Psest_0464 -1.0 -7.2 Mannosyltransferase OCH1 and related enzymes compare
Psest_0514 -1.0 -2.3 lytic murein transglycosylase B compare
Psest_3433 -1.0 -3.3 ATP-binding cassette protein, ChvD family compare
Psest_1940 -1.0 -2.2 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_0498 -1.0 -1.0 ribosome small subunit-dependent GTPase A compare
Psest_0843 -1.0 -4.7 hypothetical protein compare
Psest_0842 -1.0 -1.2 anaerobic ribonucleoside-triphosphate reductase activating protein compare


Specific Phenotypes

For 29 genes in this experiment

For stress Choline chloride in Pseudomonas stutzeri RCH2

For stress Choline chloride across organisms