Experiment set17IT057 for Pseudomonas stutzeri RCH2

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
Psest_0260 -3.4 -2.4 Cell division protein compare
Psest_0498 -3.0 -2.3 ribosome small subunit-dependent GTPase A compare
Psest_0028 -2.9 -5.6 Coproporphyrinogen III oxidase compare
Psest_0191 -2.8 -1.0 PAS domain S-box compare
Psest_0725 -2.8 -2.5 Negative regulator of beta-lactamase expression compare
Psest_2304 -2.6 -1.3 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0558 -2.3 -1.0 urease, beta subunit compare
Psest_0066 -2.3 -2.3 Protein of unknown function (DUF3060). compare
Psest_1661 -2.3 -1.6 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_2122 -2.3 -1.3 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1496 -2.2 -1.6 Holliday junction DNA helicase, RuvA subunit compare
Psest_2945 -2.2 -1.7 septum site-determining protein MinC compare
Psest_0442 -2.1 -1.5 ATPases of the AAA+ class compare
Psest_3338 -2.1 -1.8 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2229 -2.1 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_3449 -2.1 -2.5 DJ-1 family protein compare
Psest_1013 -2.0 -3.0 phosphoribosylamine--glycine ligase compare
Psest_3351 -2.0 -5.9 peptide chain release factor 3 compare
Psest_2946 -2.0 -3.2 septum site-determining protein MinD compare
Psest_2579 -1.9 -5.7 amidophosphoribosyltransferase compare
Psest_2637 -1.9 -1.1 putative methyltransferase, YaeB/AF_0241 family compare
Psest_1659 -1.9 -2.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3960 -1.9 -1.2 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1804 -1.8 -2.1 Superfamily II DNA and RNA helicases compare
Psest_4170 -1.8 -1.8 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_1999 -1.8 -1.2 pseudouridine synthase compare
Psest_1656 -1.7 -2.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0514 -1.6 -4.7 lytic murein transglycosylase B compare
Psest_3159 -1.6 -4.7 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0503 -1.6 -1.7 Acyl dehydratase compare
Psest_2001 -1.6 -1.1 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_1814 -1.6 -10.8 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3100 -1.6 -1.1 RNA polymerase sigma factor RpoE compare
Psest_0041 -1.6 -3.8 Uncharacterized protein conserved in bacteria compare
Psest_3247 -1.6 -1.5 Uncharacterized membrane protein compare
Psest_3115 -1.6 -5.9 electron transport complex, RnfABCDGE type, D subunit compare
Psest_4003 -1.5 -4.8 TIGR00153 family protein compare
Psest_1056 -1.5 -2.0 2-isopropylmalate synthase, bacterial type compare
Psest_0164 -1.5 -0.9 Glutaredoxin, GrxC family compare
Psest_0209 -1.5 -2.0 membrane protein AbrB duplication compare
Psest_4274 -1.5 -2.0 hypothetical protein compare
Psest_2285 -1.5 -3.3 ATP-dependent protease La compare
Psest_2651 -1.4 -3.5 DNA topoisomerase I, bacterial compare
Psest_0078 -1.4 -1.2 hypothetical protein compare
Psest_0999 -1.4 -1.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4044 -1.4 -1.6 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1242 -1.4 -2.1 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1510 -1.4 -2.9 Putative Zn-dependent protease, contains TPR repeats compare
Psest_2018 -1.4 -2.5 Uncharacterized conserved protein compare
Psest_3092 -1.4 -1.8 ribonuclease III, bacterial compare
Psest_1518 -1.4 -2.3 tRNA_Ser_CGA compare
Psest_4315 -1.4 -2.8 ABC-type metal ion transport system, permease component compare
Psest_4335 -1.3 -1.6 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_3908 -1.3 -1.3 Cytochrome c553 compare
Psest_1657 -1.3 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1103 -1.3 -2.9 GTP-binding protein YchF compare
Psest_3117 -1.3 -2.9 electron transport complex, RnfABCDGE type, E subunit compare
Psest_4098 -1.3 -2.8 Superfamily I DNA and RNA helicases compare
Psest_3938 -1.3 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_1012 -1.3 -3.2 Signal transduction histidine kinase compare
Psest_4256 -1.3 -2.4 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1480 -1.3 -2.4 arsenate reductase (glutaredoxin) compare
Psest_4128 -1.3 -1.3 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_0542 -1.3 -6.6 AMP nucleosidase compare
Psest_2530 -1.3 -4.0 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_1986 -1.3 -1.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_1888 -1.3 -0.9 Sua5/YciO/YrdC/YwlC family protein compare
Psest_1540 -1.3 -1.4 biotin-dependent carboxylase uncharacterized domain compare
Psest_3114 -1.2 -5.1 electron transport complex, RnfABCDGE type, C subunit compare
Psest_2590 -1.2 -0.9 3-isopropylmalate dehydratase, small subunit compare
Psest_3123 -1.2 -1.8 dihydroorotase, homodimeric type compare
Psest_1473 -1.2 -4.3 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0312 -1.2 -5.7 Superfamily II DNA and RNA helicases compare
Psest_1230 -1.2 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_2253 -1.2 -1.6 small redox-active disulfide protein 2 compare
Psest_1872 -1.2 -2.3 selT/selW/selH selenoprotein domain compare
Psest_3212 -1.2 -2.5 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3816 -1.2 -0.9 DNA-directed RNA polymerase, omega subunit compare
Psest_3496 -1.2 -1.2 Predicted metal-binding protein compare
Psest_0457 -1.2 -2.4 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0660 -1.2 -2.1 Methyl-accepting chemotaxis protein compare
Psest_2531 -1.2 -7.5 cytochrome c oxidase accessory protein FixG compare
Psest_0309 -1.2 -0.8 RND family efflux transporter, MFP subunit compare
Psest_2766 -1.2 -0.9 hypothetical protein compare
Psest_1486 -1.2 -2.5 hypothetical protein compare
Psest_3836 -1.2 -3.5 L-lactate permease compare
Psest_2940 -1.1 -2.7 Predicted membrane protein compare
Psest_4406 -1.1 -0.8 hypothetical protein compare
Psest_0718 -1.1 -2.4 nicotinate-nucleotide pyrophosphorylase compare
Psest_0115 -1.1 -1.1 Predicted integral membrane protein compare
Psest_3146 -1.1 -1.5 hypothetical protein compare
Psest_1505 -1.1 -1.3 Organic radical activating enzymes compare
Psest_1617 -1.1 -1.9 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_1295 -1.1 -3.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0950 -1.1 -2.2 hypothetical protein compare
Psest_1663 -1.1 -2.2 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3301 -1.1 -2.3 Predicted transcriptional regulator, BolA superfamily compare
Psest_0958 -1.1 -4.4 Oligoketide cyclase/lipid transport protein compare
Psest_3112 -1.1 -3.4 electron transport complex, RnfABCDGE type, A subunit compare
Psest_0417 -1.1 -2.0 Acyl-CoA dehydrogenases compare
Psest_2764 -1.1 -1.0 hypothetical protein compare
Psest_0175 -1.1 -3.9 Xaa-Pro aminopeptidase compare
Psest_2752 -1.1 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_2711 -1.1 -2.1 PilZ domain. compare
Psest_2308 -1.1 -0.9 Predicted Fe-S protein compare
Psest_0845 -1.1 -0.7 hypothetical protein compare
Psest_3881 -1.1 -1.0 hypothetical protein compare
Psest_4280 -1.1 -2.3 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_2967 -1.1 -3.7 flagellar basal-body rod protein FlgC compare
Psest_2527 -1.0 -4.8 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_0013 -1.0 -3.6 Lauroyl/myristoyl acyltransferase compare
Psest_1305 -1.0 -1.8 Heat shock protein compare
Psest_2872 -1.0 -1.3 protein RecA compare
Psest_1741 -1.0 -1.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2626 -1.0 -1.2 Flp pilus assembly protein CpaB compare
Psest_4370 -1.0 -1.5 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_2775 -1.0 -2.5 Glycerol-3-phosphate dehydrogenase compare
Psest_1774 -1.0 -1.8 Glutathione peroxidase compare
Psest_1879 -1.0 -1.8 Trk-type K+ transport systems, membrane components compare
Psest_4209 -1.0 -2.1 Uncharacterized conserved small protein compare
Psest_2333 -1.0 -0.7 Protein of unknown function (DUF3359). compare
Psest_1053 -1.0 -1.8 hypothetical protein compare
Psest_3250 -1.0 -2.6 Rho termination factor, N-terminal domain. compare
Psest_3478 -1.0 -1.3 Cytochrome B561 compare
Psest_1249 -1.0 -4.1 serine O-acetyltransferase compare
Psest_2434 -1.0 -2.8 Protein of unknown function (DUF2892). compare
Psest_1292 -1.0 -4.6 monothiol glutaredoxin, Grx4 family compare
Psest_3031 -0.9 -0.6 hypothetical protein compare
Psest_0508 -0.9 -2.7 gamma-glutamyl phosphate reductase compare
Psest_0737 -0.9 -0.7 Cu(I)-responsive transcriptional regulator compare
Psest_1082 -0.9 -1.2 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3761 -0.9 -1.7 Transcription elongation factor compare
Psest_2772 -0.9 -2.7 MIP family channel proteins compare
Psest_2983 -0.9 -2.0 hypothetical protein compare
Psest_3767 -0.9 -2.2 tyrosine recombinase XerC compare
Psest_1161 -0.9 -1.5 E3 Ubiquitin ligase. compare
Psest_2023 -0.9 -1.7 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_0759 -0.9 -0.9 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_0822 -0.9 -2.3 Transcriptional regulators compare
Psest_0490 -0.9 -5.3 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_1052 -0.9 -3.5 Uncharacterized protein involved in chromosome partitioning compare
Psest_3231 -0.9 -1.5 hypothetical protein compare
Psest_0587 -0.9 -1.8 Domain of Unknown Function (DUF326). compare
Psest_1474 -0.9 -1.4 phosphoribosylaminoimidazole synthetase compare
Psest_4341 -0.9 -2.2 hypothetical protein compare
Psest_2773 -0.9 -3.3 glycerol kinase compare
Psest_4346 -0.9 -3.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1768 -0.9 -2.3 thiopurine S-methyltransferase, Se/Te detoxification family compare
Psest_1824 -0.9 -1.8 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_1428 -0.9 -2.6 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_3743 -0.9 -2.5 Regulator of sigma D compare
Psest_4061 -0.9 -2.9 sulfate ABC transporter, permease protein CysT compare
Psest_4325 -0.9 -1.2 hypothetical protein compare
Psest_0237 -0.9 -1.9 intracellular protease, PfpI family compare
Psest_0484 -0.9 -2.4 hypothetical protein compare
Psest_3045 -0.9 -1.3 Cold shock proteins compare
Psest_2090 -0.9 -1.7 Protein of unknown function (DUF2970). compare
Psest_0346 -0.9 -1.8 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_0744 -0.8 -0.7 Uncharacterized conserved protein compare
Psest_0987 -0.8 -1.2 Predicted periplasmic or secreted lipoprotein compare
Psest_1491 -0.8 -1.9 Cold shock proteins compare
Psest_3554 -0.8 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_3322 -0.8 -6.0 TIGR02099 family protein compare
Psest_0681 -0.8 -4.0 DNA mismatch repair protein MutL compare
Psest_4042 -0.8 -1.8 hypothetical protein compare
Psest_1724 -0.8 -2.3 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1145 -0.8 -1.7 Predicted methylated DNA-protein cysteine methyltransferase compare
Psest_0062 -0.8 -3.9 tryptophan synthase, alpha subunit compare
Psest_0515 -0.8 -1.9 rare lipoprotein A compare
Psest_2786 -0.8 -0.7 Domain of unknown function (DUF3597). compare
Psest_2703 -0.8 -1.5 ATPases involved in chromosome partitioning compare
Psest_1592 -0.8 -3.2 hypothetical protein compare
Psest_4303 -0.8 -1.0 HEAT repeat. compare
Psest_1065 -0.8 -1.6 hypothetical protein compare
Psest_1058 -0.8 -1.3 ribosomal-protein-alanine acetyltransferase compare
Psest_3383 -0.8 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_3979 -0.8 -1.1 Fructose-2,6-bisphosphatase compare
Psest_1704 -0.8 -0.8 Dehydrogenases (flavoproteins) compare
Psest_1905 -0.8 -1.3 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_1322 -0.8 -1.3 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_2532 -0.8 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_1463 -0.8 -0.6 SufE protein probably involved in Fe-S center assembly compare
Psest_0297 -0.8 -1.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1248 -0.8 -2.3 RNA methyltransferase, TrmH family, group 1 compare
Psest_1604 -0.8 -2.6 Thiol-disulfide isomerase and thioredoxins compare
Psest_1282 -0.8 -0.6 Amidases related to nicotinamidase compare
Psest_3895 -0.8 -2.2 hypothetical protein compare
Psest_3228 -0.8 -4.1 Zn-dependent protease with chaperone function compare
Psest_3384 -0.8 -3.4 glutamate 5-kinase compare
Psest_2796 -0.8 -2.8 HNH endonuclease. compare
Psest_2039 -0.8 -2.8 PQQ-dependent catabolism-associated CXXCW motif protein compare
Psest_1655 -0.7 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3790 -0.7 -3.9 Cytochrome c5 compare
Psest_3762 -0.7 -2.3 iron donor protein CyaY compare
Psest_3921 -0.7 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_2447 -0.7 -1.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3186 -0.7 -2.5 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_0717 -0.7 -5.2 Protein of unknown function (DUF1631). compare
Psest_1126 -0.7 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_1563 -0.7 -0.9 Protein of unknown function (DUF548). compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in lb experiments