Experiment set17IT057 for Pseudomonas stutzeri RCH2

Compare to:

LB

200 most detrimental genes:

  gene name fitness t score description  
Psest_4405 +2.0 2.0 hypothetical protein compare
Psest_4142 +1.8 1.8 hypothetical protein compare
Psest_3850 +1.7 1.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1843 +1.6 2.7 Uncharacterized Fe-S protein compare
Psest_2855 +1.5 2.7 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_2850 +1.5 3.0 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_3047 +1.4 1.1 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_3536 +1.4 1.8 hypothetical protein compare
Psest_4310 +1.4 2.9 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_3476 +1.3 2.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3399 +1.3 1.3 Uncharacterized protein conserved in bacteria compare
Psest_3237 +1.2 2.1 hypothetical protein compare
Psest_3395 +1.2 1.0 hypothetical protein compare
Psest_1643 +1.1 1.5 hypothetical protein compare
Psest_4390 +1.1 3.2 hypothetical protein compare
Psest_3531 +1.1 0.8 Peptidase propeptide and YPEB domain. compare
Psest_3391 +1.1 1.9 Uncharacterized protein conserved in bacteria compare
Psest_2671 +1.1 2.6 Transcriptional regulator compare
Psest_1677 +1.0 1.9 Protein-tyrosine-phosphatase compare
Psest_2718 +1.0 1.5 hypothetical protein compare
Psest_4196 +1.0 2.7 Type II secretory pathway, component PulK compare
Psest_3937 +1.0 2.2 ATP-dependent protease HslVU, ATPase subunit compare
Psest_2370 +1.0 1.9 Protein of unknown function (DUF1652). compare
Psest_3129 +1.0 1.1 tyrosine recombinase XerD compare
Psest_0277 +1.0 1.2 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_2048 +1.0 1.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0526 +1.0 1.4 hypothetical protein compare
Psest_2885 +0.9 1.6 Acyl carrier protein compare
Psest_2756 +0.9 1.1 hypothetical protein compare
Psest_3002 +0.9 1.0 Putative translation initiation inhibitor, yjgF family compare
Psest_1215 +0.9 2.3 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_1029 +0.9 1.7 Regulator of competence-specific genes compare
Psest_1731 +0.9 2.0 flagellar biosynthetic protein FliO compare
Psest_4082 +0.9 1.8 hypothetical protein compare
Psest_4134 +0.9 1.7 Uncharacterized protein conserved in bacteria compare
Psest_1623 +0.9 2.1 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_3913 +0.9 1.9 hypothetical protein compare
Psest_1317 +0.9 2.5 phosphonate ABC transporter, permease protein PhnE compare
Psest_0240 +0.9 2.2 hypothetical protein compare
Psest_3072 +0.8 2.9 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit compare
Psest_1139 +0.8 3.1 PAS domain S-box compare
Psest_3824 +0.8 2.6 Predicted membrane protein compare
Psest_2148 +0.8 2.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2128 +0.8 2.5 Acyl-CoA dehydrogenases compare
Psest_1284 +0.8 3.1 exodeoxyribonuclease VII, large subunit compare
Psest_2460 +0.8 1.4 hypothetical protein compare
Psest_3070 +0.8 1.4 3-oxoadipyl-CoA thiolase compare
Psest_3168 +0.8 2.0 Molybdopterin converting factor, large subunit compare
Psest_2015 +0.8 1.2 Type II secretory pathway, component PulD compare
Psest_2486 +0.8 2.0 Uncharacterized protein, possibly involved in aromatic compounds catabolism compare
Psest_4278 +0.8 1.9 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_0563 +0.8 1.8 urea ABC transporter, ATP-binding protein UrtE compare
Psest_3718 +0.8 3.1 Tfp pilus assembly protein PilN compare
Psest_1700 +0.7 2.8 Transcriptional regulator compare
Psest_3107 +0.7 2.4 uracil-DNA glycosylase compare
Psest_3803 +0.7 1.0 DNA repair protein radc compare
Psest_2618 +0.7 2.0 Flp pilus assembly protein TadB compare
Psest_3565 +0.7 1.2 hypothetical protein compare
Psest_0842 +0.7 1.7 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_3013 +0.7 1.2 cobyrinic acid a,c-diamide synthase compare
Psest_4343 +0.7 1.1 Protein of unknown function (DUF3301). compare
Psest_1522 +0.7 1.4 hypothetical protein compare
Psest_0067 +0.7 1.2 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_3931 +0.7 1.7 Signal transduction histidine kinase, nitrogen specific compare
Psest_2801 +0.7 1.7 hypothetical protein compare
Psest_3048 +0.7 1.2 hypothetical protein compare
Psest_0991 +0.7 1.8 Predicted SAM-dependent methyltransferases compare
Psest_3148 +0.7 0.9 hypothetical protein compare
Psest_2628 +0.7 1.0 Flp pilus assembly protein, protease CpaA compare
Psest_0359 +0.7 0.9 Transcriptional regulators compare
Psest_3546 +0.7 1.0 Phosphatidylglycerophosphatase A and related proteins compare
Psest_2901 +0.7 1.3 hypothetical protein compare
Psest_1293 +0.7 0.7 VanZ like family. compare
Psest_0862 +0.7 2.0 Glycosidases compare
Psest_2500 +0.7 1.5 hypothetical protein compare
Psest_2714 +0.7 1.2 7-cyano-7-deazaguanine reductase compare
Psest_0443 +0.7 3.3 methionine-S-sulfoxide reductase compare
Psest_3069 +0.6 1.0 3-oxoadipate enol-lactonase compare
Psest_2870 +0.6 3.0 TIGR00730 family protein compare
Psest_4271 +0.6 2.0 Predicted proline hydroxylase compare
Psest_1796 +0.6 1.5 Predicted NAD/FAD-dependent oxidoreductase compare
Psest_2955 +0.6 2.1 Predicted transcriptional regulator with C-terminal CBS domains compare
Psest_4211 +0.6 2.1 conserverd hypothetical protein compare
Psest_4201 +0.6 1.0 general secretion pathway protein F compare
Psest_2348 +0.6 1.4 urea carboxylase-associated protein 2 compare
Psest_0299 +0.6 1.1 Chemotaxis signal transduction protein compare
Psest_0575 +0.6 0.7 HrpA-like helicases compare
Psest_2882 +0.6 3.0 hypothetical protein compare
Psest_4131 +0.6 1.9 alpha-ketoglutarate sensor protein (mifS) (from data) compare
Psest_4339 +0.6 2.2 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog compare
Psest_2096 +0.6 1.5 Domain of unknown function (DUF1883). compare
Psest_3458 +0.6 1.2 hypothetical protein compare
Psest_1144 +0.6 1.3 AmpG-related permease compare
Psest_0789 +0.6 1.8 hypothetical protein compare
Psest_0239 +0.6 3.2 formamidopyrimidine-DNA glycosylase (fpg) compare
Psest_4088 +0.6 1.5 Transcriptional regulators compare
Psest_1388 +0.6 1.0 Uncharacterized protein conserved in bacteria compare
Psest_1221 +0.6 2.3 Uncharacterized conserved protein compare
Psest_3456 +0.6 1.1 RNA polymerase sigma factor, sigma-70 family compare
Psest_2762 +0.6 1.1 hypothetical protein compare
Psest_0294 +0.6 1.4 Putative transcriptional regulator compare
Psest_4010 +0.6 0.9 peroxiredoxin, OsmC subfamily compare
Psest_4255 +0.6 1.9 conserved hypothetical integral membrane protein compare
Psest_3507 +0.6 1.4 FOG: EAL domain compare
Psest_2648 +0.6 1.3 hypothetical protein compare
Psest_2123 +0.6 1.2 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_4199 +0.6 2.4 general secretion pathway protein H compare
Psest_0020 +0.6 1.5 K+ transport systems, NAD-binding component compare
Psest_2470 +0.6 0.7 hypothetical protein compare
Psest_1884 +0.6 0.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3563 +0.6 1.8 ABC-type transport system, involved in lipoprotein release, permease component compare
Psest_1359 +0.6 1.2 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_1611 +0.6 1.5 Beta-lactamase class D compare
Psest_0734 +0.6 1.0 RND family efflux transporter, MFP subunit compare
Psest_4314 +0.6 1.5 ABC-type metal ion transport system, ATPase component compare
Psest_0799 +0.6 1.1 Uncharacterized protein involved in response to NO compare
Psest_1896 +0.6 1.5 ABC-type sugar transport system, periplasmic component compare
Psest_1176 +0.6 1.0 Urea transporter compare
Psest_1997 +0.6 1.2 6-phosphogluconolactonase compare
Psest_0592 +0.6 1.6 hypothetical protein compare
Psest_3205 +0.6 2.5 FolB domain compare
Psest_0061 +0.6 1.1 hypothetical protein compare
Psest_3752 +0.6 2.4 hypothetical protein compare
Psest_1660 +0.5 0.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1863 +0.5 1.3 hypothetical protein compare
Psest_1163 +0.5 1.4 diguanylate cyclase (GGDEF) domain compare
Psest_1431 +0.5 1.3 hypothetical protein compare
Psest_2146 +0.5 2.0 Transcriptional regulator compare
Psest_1485 +0.5 2.1 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Psest_1752 +0.5 1.1 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_0120 +0.5 1.7 hypothetical protein compare
Psest_2413 +0.5 1.8 Periplasmic protein TonB, links inner and outer membranes compare
Psest_4340 +0.5 2.2 Protein of unknown function (DUF3617). compare
Psest_2265 +0.5 1.1 Outer membrane protein compare
Psest_2857 +0.5 2.6 Rad3-related DNA helicases compare
Psest_0919 +0.5 0.8 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_1306 +0.5 0.7 hypothetical protein compare
Psest_1637 +0.5 2.3 transcriptional regulator, ArgP family compare
Psest_3480 +0.5 0.9 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_2664 +0.5 2.1 tripartite ATP-independent periplasmic transporter solute receptor, DctP family compare
Psest_0248 +0.5 1.9 Transcriptional regulator compare
Psest_2239 +0.5 1.0 RES domain. compare
Psest_3669 +0.5 2.4 Uncharacterized protein affecting Mg2+/Co2+ transport compare
Psest_3158 +0.5 1.5 hypothetical protein compare
Psest_1498 +0.5 0.7 tol-pal system-associated acyl-CoA thioesterase compare
Psest_2038 +0.5 1.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3490 +0.5 1.2 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_1619 +0.5 1.7 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 compare
Psest_0227 +0.5 1.1 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Psest_0097 +0.5 0.5 phosphonates metabolism transcriptional regulator PhnF compare
Psest_1162 +0.5 0.9 Spermidine synthase compare
Psest_2025 +0.5 0.5 cold shock domain protein CspD compare
Psest_1125 +0.5 1.6 Protein of unknown function (DUF3509). compare
Psest_2278 +0.5 1.2 coenzyme PQQ biosynthesis protein PqqD compare
Psest_1890 +0.5 2.2 Uncharacterized conserved protein compare
Psest_2513 +0.5 1.2 Predicted membrane protein compare
Psest_3556 +0.5 1.7 2'-5' RNA ligase compare
Psest_2243 +0.5 0.4 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_2271 +0.5 1.1 coenzyme PQQ biosynthesis protein PqqD compare
Psest_1173 +0.5 1.1 hypothetical protein compare
Psest_0867 +0.5 0.9 hypothetical protein compare
Psest_2248 +0.5 1.1 Predicted transcriptional regulators compare
Psest_0305 +0.5 1.6 RNA methyltransferase, RsmE family compare
Psest_3914 +0.5 1.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2359 +0.5 1.6 Predicted permeases compare
Psest_1445 +0.5 2.2 Curli assembly protein CsgE. compare
Psest_3697 +0.5 0.6 Outer membrane lipoprotein carrier protein LolA. compare
Psest_0054 +0.5 1.0 hypothetical protein compare
Psest_2790 +0.5 2.6 deoxyguanosinetriphosphate triphosphohydrolase, putative compare
Psest_1556 +0.5 2.1 hypothetical protein compare
Psest_3645 +0.5 2.5 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1218 +0.5 1.1 Predicted endonuclease containing a URI domain compare
Psest_2962 +0.5 2.4 Flagellar basal body L-ring protein compare
Psest_1612 +0.5 0.8 ABC-type multidrug transport system, ATPase component compare
Psest_0554 +0.5 2.4 Signal transduction histidine kinase compare
Psest_4152 +0.5 1.4 flagellar basal-body rod protein FlgC compare
Psest_1951 +0.5 0.9 Uncharacterized protein conserved in bacteria compare
Psest_3837 +0.5 1.7 malate synthase G compare
Psest_1315 +0.5 1.0 hypothetical protein compare
Psest_1308 +0.5 1.4 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_2281 +0.5 1.7 Phosphoserine aminotransferase compare
Psest_4183 +0.5 0.7 PilZ domain. compare
Psest_3806 +0.5 1.9 Phosphomannomutase compare
Psest_0952 +0.5 1.0 Uncharacterized conserved protein compare
Psest_1868 +0.5 1.4 yecA family protein compare
Psest_2431 +0.5 2.6 Transglycosylase. compare
Psest_3389 +0.5 1.4 hypothetical protein compare
Psest_2924 +0.5 1.6 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_4282 +0.5 2.3 spermidine/putrescine ABC transporter ATP-binding subunit compare
Psest_3371 +0.5 2.3 type IV pilus modification protein PilV compare
Psest_4060 +0.5 2.2 sulfate/thiosulfate-binding protein compare
Psest_1598 +0.5 1.5 heavy metal response regulator compare
Psest_3222 +0.5 1.2 Putative threonine efflux protein compare
Psest_1069 +0.5 1.7 Protease II compare
Psest_0266 +0.5 1.2 thiamine biosynthesis protein ThiS compare
Psest_3017 +0.5 1.2 Predicted phosphohydrolases compare
Psest_2908 +0.5 1.8 Protein of unknown function (DUF1469). compare
Psest_3006 +0.4 1.5 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
Psest_1802 +0.4 1.5 Spermidine synthase compare
Psest_1790 +0.4 2.2 ABC-type antimicrobial peptide transport system, ATPase component compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in lb experiments