Experiment set17IT057 for Pseudomonas fluorescens SBW25-INTG

Compare to:

p-Coumaric acid (C) 1.5 mM

200 most important genes:

  gene name fitness t score description  
PFLU_RS06730 -4.7 -10.5 CoA-transferase subunit beta compare
PFLU_RS16070 -4.6 -7.6 feruloyl-CoA synthase compare
PFLU_RS20565 -4.5 -11.3 3-isopropylmalate dehydrogenase compare
PFLU_RS06765 -4.3 -6.6 4-carboxymuconolactone decarboxylase compare
PFLU_RS16075 -4.3 -5.1 aldehyde dehydrogenase compare
PFLU_RS02490 -4.3 -12.0 phosphoserine phosphatase SerB compare
PFLU_RS06755 -4.3 -8.2 3-carboxy-cis,cis-muconate cycloisomerase compare
PFLU_RS16080 -4.3 -8.1 p-hydroxycinnamoyl CoA hydratase/lyase compare
PFLU_RS28535 -4.2 -12.6 dihydroxy-acid dehydratase compare
PFLU_RS06740 -4.1 -10.0 protocatechuate 3,4-dioxygenase subunit beta compare
PFLU_RS28695 -4.1 -7.9 phosphoglycerate dehydrogenase compare
PFLU_RS06735 -4.1 -8.2 3-oxoadipyl-CoA thiolase compare
PFLU_RS20580 -3.9 -11.3 3-isopropylmalate dehydratase large subunit compare
PFLU_RS20540 -3.9 -8.8 phosphoribosylanthranilate isomerase compare
PFLU_RS01610 -3.9 -7.9 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS23360 -3.9 -6.9 DUF2790 domain-containing protein conserved
PFLU_RS06725 -3.8 -9.8 CoA transferase subunit A compare
PFLU_RS01620 -3.8 -6.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS27370 -3.8 -12.1 anthranilate phosphoribosyltransferase compare
PFLU_RS27365 -3.8 -10.3 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS20575 -3.7 -7.1 3-isopropylmalate dehydratase small subunit compare
PFLU_RS06760 -3.7 -11.4 3-oxoadipate enol-lactonase compare
PFLU_RS07435 -3.7 -12.6 4-hydroxybenzoate 3-monooxygenase compare
PFLU_RS25640 -3.7 -13.3 ketol-acid reductoisomerase compare
PFLU_RS12975 -3.7 -5.0 DUF934 domain-containing protein compare
PFLU_RS28655 -3.6 -10.9 HAD family hydrolase compare
PFLU_RS24765 -3.6 -20.6 2-isopropylmalate synthase compare
PFLU_RS31010 -3.6 -3.0 transposase compare
PFLU_RS07430 -3.5 -12.7 helix-turn-helix domain-containing protein compare
PFLU_RS12980 -3.5 -8.4 nitrite/sulfite reductase compare
PFLU_RS01605 -3.5 -7.3 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS04810 -3.4 -13.5 LysR family transcriptional regulator conserved
PFLU_RS00180 -3.4 -6.9 tryptophan synthase subunit beta compare
PFLU_RS28165 -3.3 -10.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS04470 -3.3 -10.9 histidinol dehydrogenase compare
PFLU_RS00175 -3.2 -5.8 tryptophan synthase subunit alpha compare
PFLU_RS25360 -3.2 -8.2 glutamate 5-kinase compare
PFLU_RS01900 -3.2 -7.4 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS28385 -3.1 -13.9 homoserine O-acetyltransferase compare
PFLU_RS00415 -3.1 -2.1 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS22095 -3.1 -12.9 GTP diphosphokinase compare
PFLU_RS20515 -3.1 -3.6 amidophosphoribosyltransferase compare
PFLU_RS06715 -3.0 -11.4 IclR family transcriptional regulator compare
PFLU_RS18505 -3.0 -7.3 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS20510 -3.0 -13.5 O-succinylhomoserine sulfhydrylase compare
PFLU_RS07665 -3.0 -2.9 type I DNA topoisomerase compare
PFLU_RS23310 -2.8 -7.7 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS04930 -2.8 -13.0 PhoH family protein compare
PFLU_RS22070 -2.8 -2.7 phosphoribosylglycinamide formyltransferase compare
PFLU_RS02590 -2.8 -8.9 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS25715 -2.7 -3.2 RNA polymerase-binding protein DksA compare
PFLU_RS06745 -2.6 -5.6 protocatechuate 3,4-dioxygenase subunit alpha compare
PFLU_RS06805 -2.6 -16.8 efflux RND transporter permease subunit compare
PFLU_RS23380 -2.6 -1.8 HAD-IB family hydrolase compare
PFLU_RS04465 -2.6 -8.8 ATP phosphoribosyltransferase compare
PFLU_RS25645 -2.6 -3.5 acetolactate synthase small subunit compare
PFLU_RS19165 -2.5 -1.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS18675 -2.5 -1.7 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS19375 -2.5 -10.5 branched-chain amino acid aminotransferase compare
PFLU_RS01660 -2.5 -2.9 rhodanese-like domain-containing protein compare
PFLU_RS06810 -2.5 -8.1 efflux RND transporter periplasmic adaptor subunit compare
PFLU_RS08505 -2.4 -6.7 protease HtpX compare
PFLU_RS28390 -2.4 -10.3 methionine biosynthesis protein MetW compare
PFLU_RS09055 -2.4 -3.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS24025 -2.3 -11.3 quinolinate synthase NadA compare
PFLU_RS06800 -2.2 -8.0 AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor compare
PFLU_RS23220 -2.2 -2.6 tRNA-Arg compare
PFLU_RS03765 -2.2 -10.4 sulfate adenylyltransferase subunit CysD compare
PFLU_RS24090 -2.2 -4.4 Holliday junction branch migration protein RuvA compare
PFLU_RS25750 -2.2 -4.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS22190 -2.2 -1.8 hypothetical protein compare
PFLU_RS08125 -2.1 -3.2 integration host factor subunit beta compare
PFLU_RS23305 -2.1 -9.1 arginine N-succinyltransferase compare
PFLU_RS27340 -2.1 -8.9 histidine triad nucleotide-binding protein compare
PFLU_RS01895 -2.1 -5.8 phosphoribosyl-ATP diphosphatase compare
PFLU_RS19170 -2.1 -1.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS22740 -2.1 -4.9 phosphoadenylyl-sulfate reductase compare
PFLU_RS18635 -2.1 -1.4 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS24095 -2.1 -2.4 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS29750 -2.1 -5.3 phosphate signaling complex protein PhoU compare
PFLU_RS03770 -2.0 -11.5 sulfate adenylyltransferase subunit CysN compare
PFLU_RS03970 -2.0 -9.7 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS29755 -2.0 -11.7 phosphate ABC transporter ATP-binding protein compare
PFLU_RS01910 -2.0 -1.4 sterol-binding protein compare
PFLU_RS18670 -2.0 -1.4 NADH-quinone oxidoreductase subunit M compare
PFLU_RS04165 -2.0 -4.7 cell division protein ZapE compare
PFLU_RS29290 -2.0 -3.2 hypothetical protein compare
PFLU_RS04140 -2.0 -3.2 response regulator transcription factor compare
PFLU_RS18645 -1.9 -1.8 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS08670 -1.9 -4.5 heme lyase CcmF/NrfE family subunit compare
PFLU_RS09305 -1.9 -12.1 hypothetical protein compare
PFLU_RS17265 -1.9 -2.2 hypothetical protein compare
PFLU_RS18620 -1.9 -2.6 NADH-quinone oxidoreductase subunit B compare
PFLU_RS18615 -1.9 -2.7 NADH-quinone oxidoreductase subunit A compare
PFLU_RS24160 -1.8 -4.8 HAMP domain-containing protein compare
PFLU_RS06750 -1.8 -11.6 MFS transporter compare
PFLU_RS29765 -1.8 -13.7 ABC transporter permease subunit compare
PFLU_RS00275 -1.8 -7.6 carbonic anhydrase compare
PFLU_RS13085 -1.8 -3.3 DUF1315 family protein compare
PFLU_RS22725 -1.8 -2.6 transcriptional regulator compare
PFLU_RS18625 -1.8 -3.1 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS29480 -1.8 -9.1 exodeoxyribonuclease III compare
PFLU_RS08660 -1.7 -2.6 heme exporter protein CcmD compare
PFLU_RS25755 -1.7 -1.2 pantoate--beta-alanine ligase compare
PFLU_RS01625 -1.7 -2.3 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS27380 -1.7 -10.3 anthranilate synthase component I compare
PFLU_RS17815 -1.7 -3.5 response regulator compare
PFLU_RS25735 -1.7 -1.2 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS01960 -1.7 -1.2 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS29770 -1.7 -10.7 phosphate ABC transporter substrate-binding protein PstS compare
PFLU_RS15410 -1.7 -1.9 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS01995 -1.7 -8.5 malate dehydrogenase compare
PFLU_RS00435 -1.7 -11.4 PAS domain-containing protein compare
PFLU_RS22105 -1.6 -4.3 cysteine synthase CysM compare
PFLU_RS01875 -1.6 -1.5 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS27805 -1.6 -3.6 sarcosine oxidase subunit gamma family protein compare
PFLU_RS23920 -1.6 -1.6 septation protein A compare
PFLU_RS08735 -1.6 -2.3 histidine phosphatase family protein compare
PFLU_RS02045 -1.6 -13.3 glutamate synthase large subunit compare
PFLU_RS29515 -1.6 -7.2 RidA family protein compare
PFLU_RS28320 -1.6 -1.8 glutathione synthase compare
PFLU_RS02625 -1.6 -8.5 ribonuclease R compare
PFLU_RS04220 -1.6 -6.8 FadR family transcriptional regulator compare
PFLU_RS18530 -1.6 -4.0 DNA translocase FtsK compare
PFLU_RS07225 -1.6 -10.7 L-aspartate oxidase compare
PFLU_RS04075 -1.6 -2.1 hypothetical protein compare
PFLU_RS29780 -1.5 -5.6 acyl-CoA thioesterase compare
PFLU_RS02050 -1.5 -11.3 NAD(P)-binding protein compare
PFLU_RS18640 -1.5 -1.5 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS18655 -1.5 -1.0 NADH-quinone oxidoreductase subunit J compare
PFLU_RS06055 -1.5 -2.2 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS27650 -1.5 -10.2 biotin synthase BioB compare
PFLU_RS27640 -1.5 -2.4 alpha/beta fold hydrolase compare
PFLU_RS31800 -1.5 -1.3 hypothetical protein compare
PFLU_RS08665 -1.5 -2.7 cytochrome c maturation protein CcmE compare
PFLU_RS28965 -1.5 -7.6 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS20290 -1.5 -2.1 integration host factor subunit alpha compare
PFLU_RS27475 -1.4 -5.2 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS21665 -1.4 -4.5 MinD/ParA family protein compare
PFLU_RS21740 -1.4 -4.8 Hpt domain-containing protein compare
PFLU_RS30165 -1.4 -5.7 ParA family protein compare
PFLU_RS18665 -1.4 -1.6 NADH-quinone oxidoreductase subunit L compare
PFLU_RS01615 -1.4 -3.2 DUF2164 domain-containing protein compare
PFLU_RS27375 -1.4 -3.8 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS22520 -1.4 -2.5 GntR family transcriptional regulator compare
PFLU_RS04660 -1.4 -5.4 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS13540 -1.3 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS07275 -1.3 -2.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS31755 -1.3 -1.4 hypothetical protein compare
PFLU_RS25740 -1.3 -3.4 polynucleotide adenylyltransferase PcnB compare
PFLU_RS27630 -1.3 -4.5 dethiobiotin synthase compare
PFLU_RS20970 -1.3 -1.2 phytanoyl-CoA dioxygenase family protein compare
PFLU_RS17455 -1.3 -3.8 saccharopine dehydrogenase family protein compare
PFLU_RS29905 -1.3 -4.3 Tim44 domain-containing protein compare
PFLU_RS01285 -1.3 -1.2 HAMP domain-containing protein compare
PFLU_RS30790 -1.3 -2.0 hypothetical protein compare
PFLU_RS02585 -1.3 -3.0 protease modulator HflC compare
PFLU_RS05750 -1.3 -2.0 methionine--tRNA ligase compare
PFLU_RS02275 -1.2 -1.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS05630 -1.2 -1.2 amino acid ABC transporter ATP-binding protein compare
PFLU_RS29095 -1.2 -10.4 polyphosphate kinase 1 compare
PFLU_RS02670 -1.2 -2.6 hypothetical protein compare
PFLU_RS31190 -1.2 -6.3 taurine ABC transporter substrate-binding protein compare
PFLU_RS19555 -1.2 -1.4 histidine phosphatase family protein compare
PFLU_RS14440 -1.2 -1.3 hypothetical protein compare
PFLU_RS04415 -1.2 -2.2 LPS export ABC transporter periplasmic protein LptC compare
PFLU_RS24085 -1.2 -3.0 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS14450 -1.2 -2.3 AzlD domain-containing protein compare
PFLU_RS13350 -1.2 -1.7 ParD-like family protein compare
PFLU_RS13895 -1.2 -1.7 helix-turn-helix transcriptional regulator compare
PFLU_RS02790 -1.2 -1.5 TetR family transcriptional regulator compare
PFLU_RS24980 -1.2 -1.9 purine-binding chemotaxis protein CheW compare
PFLU_RS21425 -1.1 -3.1 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS02455 -1.1 -1.8 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS24330 -1.1 -3.7 phosphogluconate dehydratase compare
PFLU_RS28195 -1.1 -7.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS12660 -1.1 -4.4 hypothetical protein compare
PFLU_RS02970 -1.1 -4.0 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
PFLU_RS17580 -1.1 -1.9 repressor LexA compare
PFLU_RS18940 -1.1 -5.8 acyl-CoA dehydrogenase compare
PFLU_RS22010 -1.1 -4.7 threonine-phosphate decarboxylase compare
PFLU_RS02580 -1.1 -5.0 FtsH protease activity modulator HflK compare
PFLU_RS25585 -1.1 -1.2 exodeoxyribonuclease V subunit alpha compare
PFLU_RS05250 -1.1 -1.5 elongation factor 4 compare
PFLU_RS31690 -1.1 -2.9 hypothetical protein compare
PFLU_RS06205 -1.1 -2.5 cold-shock protein compare
PFLU_RS05910 -1.1 -2.0 response regulator transcription factor compare
PFLU_RS23235 -1.1 -2.1 Arc family DNA-binding protein compare
PFLU_RS25875 -1.1 -2.5 transcription elongation factor GreA compare
PFLU_RS27910 -1.1 -1.1 helix-turn-helix transcriptional regulator compare
PFLU_RS26365 -1.1 -7.8 TetR/AcrR family transcriptional regulator compare
PFLU_RS28765 -1.1 -6.1 polyamine ABC transporter ATP-binding protein compare
PFLU_RS29505 -1.1 -3.2 DNA-directed RNA polymerase subunit omega compare
PFLU_RS24125 -1.1 -2.0 cold-shock protein compare
PFLU_RS22630 -1.1 -8.1 phosphoenolpyruvate synthase compare
PFLU_RS00065 -1.0 -5.3 lysophospholipid acyltransferase compare
PFLU_RS22455 -1.0 -5.8 hypothetical protein compare
PFLU_RS27635 -1.0 -5.1 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS12580 -1.0 -4.9 MurR/RpiR family transcriptional regulator compare
PFLU_RS27645 -1.0 -7.0 8-amino-7-oxononanoate synthase compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source p-Coumaric acid in Pseudomonas fluorescens SBW25-INTG

For carbon source p-Coumaric acid across organisms