Experiment set17IT056 for Pseudomonas stutzeri RCH2

Compare to:

LB with syringaldehyde 4 mM

200 most important genes:

  gene name fitness t score description  
Psest_0309 -4.5 -1.9 RND family efflux transporter, MFP subunit compare
Psest_1986 -3.2 -1.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_0466 -2.9 -5.0 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0013 -2.9 -6.3 Lauroyl/myristoyl acyltransferase compare
Psest_0310 -2.8 -4.3 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2712 -2.7 -6.1 Surface lipoprotein compare
Psest_0028 -2.5 -5.7 Coproporphyrinogen III oxidase compare
Psest_3129 -2.3 -1.4 tyrosine recombinase XerD compare
Psest_0725 -2.3 -2.4 Negative regulator of beta-lactamase expression compare
Psest_0457 -2.2 -4.3 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1496 -2.2 -1.5 Holliday junction DNA helicase, RuvA subunit compare
Psest_0852 -2.2 -6.5 glucose-6-phosphate 1-dehydrogenase compare
Psest_0311 -2.1 -6.3 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_0575 -2.1 -1.1 HrpA-like helicases compare
Psest_0212 -1.9 -2.8 exodeoxyribonuclease V, gamma subunit compare
Psest_0398 -1.9 -5.0 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_0521 -1.9 -9.2 lytic murein transglycosylase compare
Psest_1215 -1.8 -2.5 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_3304 -1.8 -6.3 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_0845 -1.8 -1.0 hypothetical protein compare
Psest_0442 -1.8 -3.2 ATPases of the AAA+ class compare
Psest_2714 -1.8 -1.9 7-cyano-7-deazaguanine reductase compare
Psest_3045 -1.8 -2.1 Cold shock proteins compare
Psest_3306 -1.7 -4.6 conserved hypothetical integral membrane protein compare
Psest_1656 -1.7 -2.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0814 -1.7 -2.3 MoxR-like ATPases compare
Psest_3322 -1.7 -11.1 TIGR02099 family protein compare
Psest_2530 -1.6 -4.2 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_2067 -1.6 -1.4 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0417 -1.6 -2.4 Acyl-CoA dehydrogenases compare
Psest_1012 -1.6 -4.8 Signal transduction histidine kinase compare
Psest_3228 -1.6 -6.6 Zn-dependent protease with chaperone function compare
Psest_4338 -1.6 -4.6 Fe2+-dicitrate sensor, membrane component compare
Psest_4044 -1.6 -1.5 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0133 -1.6 -1.5 type VI secretion protein, VC_A0107 family compare
Psest_1498 -1.6 -1.5 tol-pal system-associated acyl-CoA thioesterase compare
Psest_3100 -1.6 -1.1 RNA polymerase sigma factor RpoE compare
Psest_3303 -1.6 -5.3 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3307 -1.5 -7.6 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3447 -1.5 -1.6 Uncharacterized MobA-related protein compare
Psest_3767 -1.5 -3.3 tyrosine recombinase XerC compare
Psest_0006 -1.5 -4.5 alkyl hydroperoxide reductase, F subunit compare
Psest_1322 -1.5 -2.0 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_3305 -1.5 -6.8 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_0558 -1.5 -0.8 urease, beta subunit compare
Psest_3112 -1.5 -3.3 electron transport complex, RnfABCDGE type, A subunit compare
Psest_1013 -1.5 -3.4 phosphoribosylamine--glycine ligase compare
Psest_2308 -1.5 -1.0 Predicted Fe-S protein compare
Psest_0872 -1.4 -1.2 Helix-turn-helix. compare
Psest_1510 -1.4 -3.1 Putative Zn-dependent protease, contains TPR repeats compare
Psest_2894 -1.4 -2.4 addiction module antidote protein, HigA family compare
Psest_1295 -1.4 -5.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2872 -1.4 -2.0 protein RecA compare
Psest_1910 -1.4 -2.5 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase compare
Psest_4363 -1.4 -6.5 ATPases involved in chromosome partitioning compare
Psest_2651 -1.4 -3.2 DNA topoisomerase I, bacterial compare
Psest_0514 -1.4 -5.0 lytic murein transglycosylase B compare
Psest_0759 -1.3 -1.4 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_4128 -1.3 -1.5 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3123 -1.3 -1.8 dihydroorotase, homodimeric type compare
Psest_0533 -1.3 -2.7 Sel1 repeat. compare
Psest_0078 -1.3 -1.2 hypothetical protein compare
Psest_0744 -1.3 -0.9 Uncharacterized conserved protein compare
Psest_3850 -1.3 -0.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2585 -1.2 -0.8 pseudouridylate synthase I compare
Psest_1863 -1.2 -2.5 hypothetical protein compare
Psest_3884 -1.2 -1.0 Signal transduction histidine kinase compare
Psest_2001 -1.2 -1.1 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_0498 -1.2 -1.3 ribosome small subunit-dependent GTPase A compare
Psest_1659 -1.2 -2.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0031 -1.2 -1.7 Uncharacterized conserved protein compare
Psest_0515 -1.2 -2.8 rare lipoprotein A compare
Psest_3168 -1.2 -1.8 Molybdopterin converting factor, large subunit compare
Psest_0191 -1.2 -0.5 PAS domain S-box compare
Psest_3338 -1.2 -1.0 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2561 -1.2 -0.8 hypothetical protein compare
Psest_2579 -1.2 -4.4 amidophosphoribosyltransferase compare
Psest_1457 -1.2 -1.2 FOG: Ankyrin repeat compare
Psest_0114 -1.2 -1.8 RNA polymerase sigma factor, sigma-70 family compare
Psest_2358 -1.1 -1.9 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2538 -1.1 -1.2 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_4010 -1.1 -1.1 peroxiredoxin, OsmC subfamily compare
Psest_1142 -1.1 -3.7 Uncharacterized protein conserved in bacteria compare
Psest_2240 -1.1 -1.6 hypothetical protein compare
Psest_3031 -1.1 -0.6 hypothetical protein compare
Psest_3092 -1.1 -1.3 ribonuclease III, bacterial compare
Psest_2810 -1.1 -3.5 5'/3'-nucleotidase SurE compare
Psest_3883 -1.1 -4.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3177 -1.1 -1.5 hypothetical protein compare
Psest_2229 -1.1 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_3862 -1.1 -6.3 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0190 -1.1 -3.3 Uncharacterized conserved protein compare
Psest_0152 -1.0 -2.8 Imidazoleglycerol-phosphate dehydratase compare
Psest_0732 -1.0 -2.3 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_2953 -1.0 -1.5 Histone acetyltransferase compare
Psest_0692 -1.0 -2.2 rRNA methylase, putative, group 3 compare
Psest_2748 -1.0 -1.3 Transcriptional regulator compare
Psest_1661 -1.0 -1.6 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_2532 -1.0 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_4325 -1.0 -1.9 hypothetical protein compare
Psest_3301 -1.0 -1.8 Predicted transcriptional regulator, BolA superfamily compare
Psest_0675 -1.0 -2.3 Predicted periplasmic lipoprotein compare
Psest_0499 -1.0 -2.5 hypothetical protein compare
Psest_3803 -1.0 -1.1 DNA repair protein radc compare
Psest_0449 -1.0 -5.4 Glutamine synthetase adenylyltransferase compare
Psest_3395 -0.9 -0.8 hypothetical protein compare
Psest_1022 -0.9 -4.6 Thiol:disulfide interchange protein compare
Psest_0867 -0.9 -1.2 hypothetical protein compare
Psest_3790 -0.9 -4.9 Cytochrome c5 compare
Psest_2531 -0.9 -5.5 cytochrome c oxidase accessory protein FixG compare
Psest_3331 -0.9 -2.5 rare lipoprotein A compare
Psest_4307 -0.9 -1.8 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_0998 -0.9 -1.6 poly(A) polymerase compare
Psest_2935 -0.9 -2.6 hypothetical protein compare
Psest_0237 -0.9 -1.5 intracellular protease, PfpI family compare
Psest_4405 -0.9 -1.3 hypothetical protein compare
Psest_2778 -0.9 -1.9 Parvulin-like peptidyl-prolyl isomerase compare
Psest_2775 -0.9 -2.4 Glycerol-3-phosphate dehydrogenase compare
Psest_1293 -0.9 -0.9 VanZ like family. compare
Psest_2370 -0.9 -1.3 Protein of unknown function (DUF1652). compare
Psest_0737 -0.9 -0.6 Cu(I)-responsive transcriptional regulator compare
Psest_0734 -0.9 -2.6 RND family efflux transporter, MFP subunit compare
Psest_1382 -0.9 -3.4 Transcription elongation factor compare
Psest_2773 -0.9 -3.6 glycerol kinase compare
Psest_0440 -0.9 -1.6 hypothetical protein compare
Psest_0357 -0.8 -1.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1947 -0.8 -0.6 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_4191 -0.8 -1.6 Transcriptional regulator compare
Psest_4090 -0.8 -2.8 diaminobutyrate acetyltransferase compare
Psest_2332 -0.8 -6.1 Predicted acetyltransferase compare
Psest_2446 -0.8 -1.1 acetyl-CoA acetyltransferases compare
Psest_3882 -0.8 -4.9 Opacity protein and related surface antigens compare
Psest_3117 -0.8 -1.9 electron transport complex, RnfABCDGE type, E subunit compare
Psest_1873 -0.8 -1.7 Predicted permease, DMT superfamily compare
Psest_0087 -0.8 -1.9 hypothetical protein compare
Psest_0958 -0.8 -3.3 Oligoketide cyclase/lipid transport protein compare
Psest_2334 -0.8 -5.9 Uncharacterized protein conserved in bacteria compare
Psest_3317 -0.8 -2.2 Phosphotransferase System HPr (HPr) Family compare
Psest_2083 -0.8 -2.7 Putative sterol carrier protein compare
Psest_3323 -0.8 -2.3 ribonuclease, Rne/Rng family compare
Psest_0334 -0.8 -1.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0218 -0.8 -2.0 Acyl-CoA hydrolase compare
Psest_3913 -0.8 -2.2 hypothetical protein compare
Psest_1159 -0.8 -2.7 Uncharacterized iron-regulated protein compare
Psest_0359 -0.8 -1.9 Transcriptional regulators compare
Psest_3222 -0.8 -1.6 Putative threonine efflux protein compare
Psest_2711 -0.8 -1.1 PilZ domain. compare
Psest_1417 -0.8 -0.7 hypothetical protein compare
Psest_1242 -0.8 -1.1 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2527 -0.8 -3.2 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_0704 -0.8 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_4056 -0.8 -1.9 FMN reductase, SsuE family compare
Psest_0083 -0.8 -1.2 Uncharacterized conserved protein compare
Psest_0843 -0.8 -4.1 hypothetical protein compare
Psest_1444 -0.8 -1.5 Curli production assembly/transport component CsgF. compare
Psest_0846 -0.8 -2.0 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_1227 -0.8 -1.2 Predicted SAM-dependent methyltransferase compare
Psest_0536 -0.8 -2.6 thiamine-phosphate pyrophosphorylase compare
Psest_2764 -0.8 -0.8 hypothetical protein compare
Psest_0316 -0.8 -1.6 Cytochrome c556 compare
Psest_1709 -0.7 -1.4 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3908 -0.7 -0.9 Cytochrome c553 compare
Psest_1149 -0.7 -1.4 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_2339 -0.7 -2.3 transcription elongation factor GreB compare
Psest_3853 -0.7 -1.3 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_2218 -0.7 -2.2 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_0609 -0.7 -0.8 hypothetical protein compare
Psest_0041 -0.7 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_0722 -0.7 -2.9 Predicted ATPase compare
Psest_1704 -0.7 -0.8 Dehydrogenases (flavoproteins) compare
Psest_3159 -0.7 -3.1 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0999 -0.7 -1.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4078 -0.7 -1.0 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_1070 -0.7 -2.0 Predicted membrane protein compare
Psest_1574 -0.7 -1.0 phenazine biosynthesis protein PhzF family compare
Psest_0281 -0.7 -3.7 Dynamin family. compare
Psest_1884 -0.7 -1.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1313 -0.7 -1.0 Uncharacterized conserved small protein compare
Psest_3819 -0.7 -1.6 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1822 -0.7 -3.2 Glycosyltransferases involved in cell wall biogenesis compare
Psest_1631 -0.7 -0.9 Uncharacterized conserved small protein compare
Psest_2595 -0.7 -2.3 tRNA-dihydrouridine synthase compare
Psest_3937 -0.7 -1.1 ATP-dependent protease HslVU, ATPase subunit compare
Psest_3934 -0.7 -2.1 rRNA methylase, putative, group 2 compare
Psest_0066 -0.7 -1.1 Protein of unknown function (DUF3060). compare
Psest_3562 -0.7 -1.2 ABC-type antimicrobial peptide transport system, ATPase component compare
Psest_1954 -0.7 -1.8 hypothetical protein compare
Psest_3048 -0.7 -1.0 hypothetical protein compare
Psest_1199 -0.7 -1.9 OHCU decarboxylase compare
Psest_4390 -0.7 -2.5 hypothetical protein compare
Psest_2491 -0.7 -2.0 succinyl-CoA synthetase, beta subunit compare
Psest_2458 -0.7 -1.3 MoxR-like ATPases compare
Psest_0086 -0.7 -1.6 hypothetical protein compare
Psest_3921 -0.7 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_1456 -0.7 -1.7 Protein of unknown function (DUF2892). compare
Psest_4001 -0.7 -1.9 acetylornithine deacetylase (ArgE) compare
Psest_1602 -0.7 -1.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3810 -0.7 -0.7 orotate phosphoribosyltransferase compare
Psest_0902 -0.7 -2.1 Predicted transcriptional regulators compare
Psest_0063 -0.7 -3.5 tryptophan synthase, beta subunit compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in stress experiments

For stress syringaldehyde across organisms