Experiment set17IT055 for Pseudomonas stutzeri RCH2

Compare to:

LB with syringaldehyde 3 mM

200 most important genes:

  gene name fitness t score description  
Psest_2025 -4.9 -1.2 cold shock domain protein CspD compare
Psest_0466 -4.0 -3.9 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2855 -3.7 -2.2 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0164 -3.2 -1.1 Glutaredoxin, GrxC family compare
Psest_0028 -3.2 -6.0 Coproporphyrinogen III oxidase compare
Psest_3400 -3.1 -1.5 Copper resistance protein D. compare
Psest_0309 -2.9 -1.6 RND family efflux transporter, MFP subunit compare
Psest_2945 -2.9 -2.0 septum site-determining protein MinC compare
Psest_0725 -2.9 -2.4 Negative regulator of beta-lactamase expression compare
Psest_0191 -2.8 -1.0 PAS domain S-box compare
Psest_1920 -2.8 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_0310 -2.7 -3.7 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2304 -2.7 -1.3 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1082 -2.5 -2.6 Enoyl-CoA hydratase/carnithine racemase compare
Psest_0115 -2.5 -1.6 Predicted integral membrane protein compare
Psest_1655 -2.5 -4.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3228 -2.5 -11.3 Zn-dependent protease with chaperone function compare
Psest_1656 -2.4 -2.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_1518 -2.4 -2.9 tRNA_Ser_CGA compare
Psest_1659 -2.4 -2.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1510 -2.4 -2.8 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0457 -2.3 -4.7 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0013 -2.3 -5.4 Lauroyl/myristoyl acyltransferase compare
Psest_2585 -2.3 -1.1 pseudouridylate synthase I compare
Psest_3377 -2.1 -1.3 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_0311 -2.1 -5.9 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_0845 -2.1 -1.0 hypothetical protein compare
Psest_0442 -2.0 -2.0 ATPases of the AAA+ class compare
Psest_0031 -2.0 -2.0 Uncharacterized conserved protein compare
Psest_2067 -2.0 -1.6 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3226 -2.0 -1.2 Predicted membrane protein compare
Psest_3305 -2.0 -9.0 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_1295 -1.9 -6.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1013 -1.9 -3.3 phosphoribosylamine--glycine ligase compare
Psest_2946 -1.9 -3.1 septum site-determining protein MinD compare
Psest_1661 -1.9 -1.8 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3014 -1.9 -1.8 cob(I)alamin adenosyltransferase compare
Psest_3236 -1.9 -3.5 hypothetical protein compare
Psest_3322 -1.8 -12.1 TIGR02099 family protein compare
Psest_2579 -1.8 -5.5 amidophosphoribosyltransferase compare
Psest_2651 -1.8 -3.1 DNA topoisomerase I, bacterial compare
Psest_0417 -1.7 -2.0 Acyl-CoA dehydrogenases compare
Psest_2532 -1.7 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_3304 -1.6 -5.0 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_3307 -1.6 -5.9 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3206 -1.6 -3.7 Uncharacterized protein conserved in bacteria compare
Psest_0511 -1.6 -1.6 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_3790 -1.6 -8.3 Cytochrome c5 compare
Psest_3100 -1.6 -1.1 RNA polymerase sigma factor RpoE compare
Psest_2772 -1.6 -3.9 MIP family channel proteins compare
Psest_0609 -1.5 -1.3 hypothetical protein compare
Psest_0498 -1.5 -1.5 ribosome small subunit-dependent GTPase A compare
Psest_3306 -1.5 -4.8 conserved hypothetical integral membrane protein compare
Psest_4044 -1.5 -1.1 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1704 -1.5 -1.0 Dehydrogenases (flavoproteins) compare
Psest_2531 -1.5 -8.7 cytochrome c oxidase accessory protein FixG compare
Psest_3962 -1.5 -1.5 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_0737 -1.5 -0.9 Cu(I)-responsive transcriptional regulator compare
Psest_2520 -1.5 -1.7 Predicted SAM-dependent methyltransferase compare
Psest_4338 -1.5 -3.8 Fe2+-dicitrate sensor, membrane component compare
Psest_3303 -1.5 -4.0 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1631 -1.5 -2.0 Uncharacterized conserved small protein compare
Psest_1951 -1.5 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_0514 -1.4 -3.8 lytic murein transglycosylase B compare
Psest_2527 -1.4 -6.1 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_0521 -1.4 -5.5 lytic murein transglycosylase compare
Psest_2847 -1.4 -2.8 Multisubunit Na+/H+ antiporter, MnhF subunit compare
Psest_1657 -1.4 -1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3367 -1.4 -1.3 translation initation factor SUI1, putative, prokaryotic compare
Psest_2613 -1.4 -1.4 hypothetical protein compare
Psest_2530 -1.4 -3.9 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_0515 -1.4 -3.6 rare lipoprotein A compare
Psest_3662 -1.4 -2.7 DnaJ-domain-containing proteins 1 compare
Psest_3565 -1.4 -1.0 hypothetical protein compare
Psest_4219 -1.3 -2.5 DNA polymerase I compare
Psest_2899 -1.3 -1.3 hypothetical protein compare
Psest_3115 -1.3 -5.0 electron transport complex, RnfABCDGE type, D subunit compare
Psest_0958 -1.3 -4.8 Oligoketide cyclase/lipid transport protein compare
Psest_2712 -1.3 -3.5 Surface lipoprotein compare
Psest_3045 -1.3 -1.9 Cold shock proteins compare
Psest_4090 -1.3 -3.1 diaminobutyrate acetyltransferase compare
Psest_3546 -1.3 -0.9 Phosphatidylglycerophosphatase A and related proteins compare
Psest_0697 -1.3 -2.7 ribosomal protein L9 compare
Psest_3449 -1.3 -1.6 DJ-1 family protein compare
Psest_1111 -1.2 -2.5 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_2148 -1.2 -2.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0998 -1.2 -2.1 poly(A) polymerase compare
Psest_0716 -1.2 -1.8 Protein of unknown function (DUF3094). compare
Psest_1505 -1.2 -2.1 Organic radical activating enzymes compare
Psest_1516 -1.2 -2.0 Uncharacterized lipoprotein compare
Psest_3476 -1.2 -1.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_4273 -1.2 -4.5 Lysophospholipase compare
Psest_0852 -1.2 -3.5 glucose-6-phosphate 1-dehydrogenase compare
Psest_1997 -1.2 -1.3 6-phosphogluconolactonase compare
Psest_2630 -1.2 -2.7 hypothetical protein compare
Psest_2278 -1.2 -2.3 coenzyme PQQ biosynthesis protein PqqD compare
Psest_2238 -1.1 -2.4 hypothetical protein compare
Psest_1856 -1.1 -2.1 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_0114 -1.1 -1.9 RNA polymerase sigma factor, sigma-70 family compare
Psest_0959 -1.1 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_1878 -1.1 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_1814 -1.1 -7.6 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0999 -1.1 -1.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1022 -1.1 -5.7 Thiol:disulfide interchange protein compare
Psest_3862 -1.1 -6.5 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3767 -1.1 -2.6 tyrosine recombinase XerC compare
Psest_1884 -1.1 -0.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2975 -1.1 -1.7 tRNA_Arg_CCT compare
Psest_1804 -1.1 -1.6 Superfamily II DNA and RNA helicases compare
Psest_3112 -1.1 -3.4 electron transport complex, RnfABCDGE type, A subunit compare
Psest_2445 -1.1 -2.8 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
Psest_3159 -1.1 -4.0 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3860 -1.1 -2.1 Predicted permeases compare
Psest_2911 -1.0 -1.5 Protein of unknown function (DUF2945). compare
Psest_4363 -1.0 -4.3 ATPases involved in chromosome partitioning compare
Psest_2852 -1.0 -2.7 Outer membrane lipoprotein compare
Psest_2637 -1.0 -1.0 putative methyltransferase, YaeB/AF_0241 family compare
Psest_3535 -1.0 -2.8 hypothetical protein compare
Psest_0101 -1.0 -4.1 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_0869 -1.0 -2.2 Acetyltransferase (isoleucine patch superfamily) compare
Psest_3129 -1.0 -0.9 tyrosine recombinase XerD compare
Psest_0449 -1.0 -4.9 Glutamine synthetase adenylyltransferase compare
Psest_3883 -1.0 -4.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_4163 -1.0 -2.2 hypothetical protein compare
Psest_3960 -1.0 -1.1 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1642 -1.0 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_0186 -1.0 -2.6 Protein-disulfide isomerase compare
Psest_2590 -1.0 -0.7 3-isopropylmalate dehydratase, small subunit compare
Psest_2646 -1.0 -1.1 SOS regulatory protein LexA compare
Psest_2044 -1.0 -2.7 ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system compare
Psest_3810 -1.0 -0.7 orotate phosphoribosyltransferase compare
Psest_4335 -1.0 -1.3 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_3106 -1.0 -2.4 Predicted outer membrane protein compare
Psest_0489 -1.0 -0.7 phosphoserine phosphatase SerB compare
Psest_3351 -1.0 -3.9 peptide chain release factor 3 compare
Psest_1873 -1.0 -1.9 Predicted permease, DMT superfamily compare
Psest_1986 -1.0 -1.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_4010 -0.9 -1.0 peroxiredoxin, OsmC subfamily compare
Psest_0487 -0.9 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_3114 -0.9 -4.4 electron transport complex, RnfABCDGE type, C subunit compare
Psest_3944 -0.9 -2.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3819 -0.9 -2.9 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1600 -0.9 -1.6 hypothetical protein compare
Psest_0063 -0.9 -4.0 tryptophan synthase, beta subunit compare
Psest_3117 -0.9 -2.1 electron transport complex, RnfABCDGE type, E subunit compare
Psest_1392 -0.9 -1.7 ABC-type uncharacterized transport systems, ATPase components compare
Psest_3092 -0.9 -1.5 ribonuclease III, bacterial compare
Psest_3048 -0.9 -1.3 hypothetical protein compare
Psest_1012 -0.9 -2.6 Signal transduction histidine kinase compare
Psest_0062 -0.9 -3.8 tryptophan synthase, alpha subunit compare
Psest_2425 -0.9 -2.0 Trk-type K+ transport systems, membrane components compare
Psest_3042 -0.9 -0.6 Nitrate reductase cytochrome c-type subunit compare
Psest_2334 -0.9 -6.3 Uncharacterized protein conserved in bacteria compare
Psest_1824 -0.9 -1.8 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_0066 -0.9 -1.4 Protein of unknown function (DUF3060). compare
Psest_3727 -0.9 -2.6 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_4161 -0.9 -2.6 Flagellar basal body-associated protein compare
Psest_3693 -0.9 -1.3 Glycosyltransferases involved in cell wall biogenesis compare
Psest_3882 -0.9 -5.2 Opacity protein and related surface antigens compare
Psest_1306 -0.9 -1.2 hypothetical protein compare
Psest_1444 -0.9 -2.2 Curli production assembly/transport component CsgF. compare
Psest_3247 -0.9 -1.1 Uncharacterized membrane protein compare
Psest_1504 -0.9 -2.7 tol-pal system protein YbgF compare
Psest_1483 -0.9 -2.8 hypothetical protein compare
Psest_4310 -0.8 -1.1 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_0218 -0.8 -1.6 Acyl-CoA hydrolase compare
Psest_0823 -0.8 -1.5 Transcriptional regulators compare
Psest_1152 -0.8 -2.2 hypothetical protein compare
Psest_1474 -0.8 -1.4 phosphoribosylaminoimidazole synthetase compare
Psest_0592 -0.8 -1.7 hypothetical protein compare
Psest_0526 -0.8 -2.4 hypothetical protein compare
Psest_1184 -0.8 -2.9 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_2720 -0.8 -1.8 Enoyl-CoA hydratase/carnithine racemase compare
Psest_1879 -0.8 -1.4 Trk-type K+ transport systems, membrane components compare
Psest_1660 -0.8 -1.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0357 -0.8 -1.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1595 -0.8 -0.9 Copper chaperone compare
Psest_1665 -0.8 -3.1 hypothetical protein compare
Psest_0843 -0.8 -4.3 hypothetical protein compare
Psest_4102 -0.8 -1.2 peroxiredoxin, Ohr subfamily compare
Psest_1496 -0.8 -0.6 Holliday junction DNA helicase, RuvA subunit compare
Psest_2716 -0.8 -1.3 ABC-type multidrug transport system, ATPase component compare
Psest_2775 -0.8 -2.2 Glycerol-3-phosphate dehydrogenase compare
Psest_0485 -0.8 -2.4 clan AA aspartic protease, TIGR02281 family compare
Psest_1772 -0.8 -2.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3005 -0.8 -1.4 Fructose-2,6-bisphosphatase compare
Psest_0915 -0.8 -2.4 hypothetical protein compare
Psest_2347 -0.8 -2.0 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_1960 -0.8 -1.1 Bacterial protein of unknown function (DUF903). compare
Psest_1582 -0.8 -2.1 Protein of unknown function (DUF3087). compare
Psest_0175 -0.8 -3.1 Xaa-Pro aminopeptidase compare
Psest_1520 -0.8 -1.8 hypothetical protein compare
Psest_2557 -0.8 -0.7 Protein of unknown function (DUF2474). compare
Psest_1176 -0.8 -1.3 Urea transporter compare
Psest_3754 -0.8 -2.1 Uncharacterized protein involved in response to NO compare
Psest_0508 -0.8 -2.9 gamma-glutamyl phosphate reductase compare
Psest_3545 -0.8 -2.0 clan AA aspartic protease, TIGR02281 family compare
Psest_4209 -0.8 -0.8 Uncharacterized conserved small protein compare
Psest_2047 -0.8 -1.8 Signal transduction histidine kinase compare
Psest_4064 -0.8 -1.9 Lactate dehydrogenase and related dehydrogenases compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in stress experiments

For stress syringaldehyde across organisms