Experiment set17IT052 for Pseudomonas stutzeri RCH2

Compare to:

LB with Carbenicillin disodium salt 0.008 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_0309 -4.2 -1.7 RND family efflux transporter, MFP subunit compare
Psest_3395 -3.9 -1.3 hypothetical protein compare
Psest_2945 -3.4 -1.8 septum site-determining protein MinC compare
Psest_0310 -3.2 -3.1 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_0514 -3.1 -6.7 lytic murein transglycosylase B compare
Psest_0164 -3.1 -1.0 Glutaredoxin, GrxC family compare
Psest_0192 -3.0 -10.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0311 -2.9 -7.8 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_0959 -2.8 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_0191 -2.8 -0.9 PAS domain S-box compare
Psest_4298 -2.8 -1.1 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_2756 -2.7 -1.4 hypothetical protein compare
Psest_1725 -2.6 -10.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0066 -2.6 -2.2 Protein of unknown function (DUF3060). compare
Psest_4142 -2.6 -1.7 hypothetical protein compare
Psest_0189 -2.5 -8.2 Negative regulator of beta-lactamase expression conserved
Psest_0725 -2.4 -2.3 Negative regulator of beta-lactamase expression compare
Psest_0325 -2.4 -11.3 Putative threonine efflux protein compare
Psest_3963 -2.4 -11.0 PAS domain S-box compare
Psest_1814 -2.3 -15.9 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1974 -2.3 -2.9 integration host factor, alpha subunit compare
Psest_2229 -2.3 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_3115 -2.2 -7.1 electron transport complex, RnfABCDGE type, D subunit compare
Psest_1870 -2.2 -1.4 Transcriptional regulators compare
Psest_1510 -2.2 -2.9 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0487 -2.2 -4.0 Uncharacterized protein conserved in bacteria compare
Psest_1888 -2.1 -1.1 Sua5/YciO/YrdC/YwlC family protein compare
Psest_2288 -2.1 -3.9 trigger factor compare
Psest_4406 -2.1 -1.1 hypothetical protein compare
Psest_0970 -2.1 -2.5 hypothetical protein compare
Psest_0515 -2.1 -4.2 rare lipoprotein A compare
Psest_3322 -2.0 -13.6 TIGR02099 family protein compare
Psest_2901 -2.0 -2.1 hypothetical protein compare
Psest_3301 -2.0 -1.9 Predicted transcriptional regulator, BolA superfamily compare
Psest_0697 -2.0 -3.3 ribosomal protein L9 compare
Psest_0521 -2.0 -8.4 lytic murein transglycosylase compare
Psest_0538 -2.0 -16.4 Signal transduction histidine kinase compare
Psest_1679 -2.0 -1.9 ribonuclease, Rne/Rng family compare
Psest_4335 -1.9 -1.7 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_2872 -1.9 -2.4 protein RecA compare
Psest_2764 -1.9 -1.4 hypothetical protein compare
Psest_2530 -1.9 -5.0 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_1103 -1.9 -3.4 GTP-binding protein YchF compare
Psest_3070 -1.9 -2.2 3-oxoadipyl-CoA thiolase compare
Psest_2527 -1.9 -7.0 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_2946 -1.9 -3.4 septum site-determining protein MinD compare
Psest_2581 -1.8 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_3146 -1.8 -1.7 hypothetical protein compare
Psest_0193 -1.8 -1.3 conserved hypothetical protein compare
Psest_1611 -1.8 -5.0 Beta-lactamase class D conserved
Psest_1056 -1.8 -2.6 2-isopropylmalate synthase, bacterial type compare
Psest_2532 -1.8 -2.9 Uncharacterized protein conserved in bacteria compare
Psest_3790 -1.8 -7.2 Cytochrome c5 compare
Psest_2757 -1.8 -1.1 hypothetical protein compare
Psest_3878 -1.8 -2.8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1661 -1.7 -1.7 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_4008 -1.7 -10.7 PAS domain S-box compare
Psest_3113 -1.7 -1.6 electron transport complex, RnfABCDGE type, B subunit compare
Psest_2458 -1.7 -3.2 MoxR-like ATPases compare
Psest_1540 -1.7 -1.4 biotin-dependent carboxylase uncharacterized domain compare
Psest_1322 -1.7 -2.0 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_1950 -1.6 -10.1 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family conserved
Psest_2718 -1.6 -1.1 hypothetical protein compare
Psest_2555 -1.6 -8.8 hypothetical protein compare
Psest_0260 -1.6 -1.6 Cell division protein compare
Psest_1805 -1.6 -1.8 integration host factor, beta subunit compare
Psest_0115 -1.6 -1.3 Predicted integral membrane protein compare
Psest_2923 -1.6 -1.5 hypothetical protein compare
Psest_0717 -1.6 -10.6 Protein of unknown function (DUF1631). compare
Psest_4274 -1.6 -2.4 hypothetical protein compare
Psest_2786 -1.6 -1.0 Domain of unknown function (DUF3597). compare
Psest_3128 -1.5 -3.3 Protein-disulfide isomerase compare
Psest_0442 -1.5 -2.7 ATPases of the AAA+ class compare
Psest_0857 -1.5 -1.4 Membrane transporters of cations and cationic drugs compare
Psest_3114 -1.5 -6.1 electron transport complex, RnfABCDGE type, C subunit compare
Psest_2531 -1.5 -8.3 cytochrome c oxidase accessory protein FixG compare
Psest_3762 -1.5 -3.6 iron donor protein CyaY compare
Psest_0020 -1.5 -3.9 K+ transport systems, NAD-binding component compare
Psest_0196 -1.5 -8.9 Uncharacterized membrane protein, required for spore maturation in B.subtilis. conserved
Psest_1053 -1.5 -2.6 hypothetical protein compare
Psest_3882 -1.5 -8.1 Opacity protein and related surface antigens compare
Psest_3850 -1.4 -0.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3180 -1.4 -6.1 Exonuclease I compare
Psest_3112 -1.4 -3.3 electron transport complex, RnfABCDGE type, A subunit compare
Psest_4010 -1.4 -1.1 peroxiredoxin, OsmC subfamily compare
Psest_0097 -1.4 -1.5 phosphonates metabolism transcriptional regulator PhnF compare
Psest_1774 -1.4 -2.2 Glutathione peroxidase compare
Psest_3100 -1.4 -1.3 RNA polymerase sigma factor RpoE compare
Psest_0722 -1.4 -4.5 Predicted ATPase compare
Psest_3123 -1.4 -1.6 dihydroorotase, homodimeric type compare
Psest_4044 -1.4 -0.9 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0013 -1.3 -4.2 Lauroyl/myristoyl acyltransferase compare
Psest_0312 -1.3 -3.3 Superfamily II DNA and RNA helicases compare
Psest_0417 -1.3 -2.0 Acyl-CoA dehydrogenases compare
Psest_4098 -1.3 -3.1 Superfamily I DNA and RNA helicases compare
Psest_2513 -1.3 -3.8 Predicted membrane protein compare
Psest_3816 -1.3 -0.9 DNA-directed RNA polymerase, omega subunit compare
Psest_2850 -1.3 -1.2 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_2260 -1.3 -9.8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3200 -1.3 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_3351 -1.3 -4.8 peptide chain release factor 3 compare
Psest_1879 -1.3 -2.6 Trk-type K+ transport systems, membrane components compare
Psest_4219 -1.3 -2.0 DNA polymerase I compare
Psest_2017 -1.3 -2.9 Predicted acyltransferase compare
Psest_4103 -1.3 -1.1 AraC-type DNA-binding domain-containing proteins compare
Psest_2104 -1.2 -0.8 IscR-regulated protein YhgI compare
Psest_3767 -1.2 -3.6 tyrosine recombinase XerC compare
Psest_1496 -1.2 -0.7 Holliday junction DNA helicase, RuvA subunit compare
Psest_1204 -1.2 -2.0 Transcriptional regulators compare
Psest_2637 -1.2 -1.1 putative methyltransferase, YaeB/AF_0241 family compare
Psest_3092 -1.2 -1.6 ribonuclease III, bacterial compare
Psest_1162 -1.2 -1.6 Spermidine synthase compare
Psest_0114 -1.2 -1.9 RNA polymerase sigma factor, sigma-70 family compare
Psest_3323 -1.2 -2.4 ribonuclease, Rne/Rng family compare
Psest_0259 -1.2 -0.8 cell division ATP-binding protein FtsE compare
Psest_2070 -1.2 -4.9 FOG: LysM repeat compare
Psest_3332 -1.2 -5.6 K+-dependent Na+/Ca+ exchanger related-protein compare
Psest_1491 -1.2 -2.6 Cold shock proteins compare
Psest_1986 -1.2 -1.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_2423 -1.2 -4.8 Uncharacterized conserved protein compare
Psest_1659 -1.2 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_4382 -1.1 -8.1 hypothetical protein compare
Psest_4273 -1.1 -3.8 Lysophospholipase compare
Psest_1013 -1.1 -2.5 phosphoribosylamine--glycine ligase compare
Psest_0501 -1.1 -1.8 Predicted nucleoside-diphosphate-sugar epimerases compare
Psest_0744 -1.1 -0.8 Uncharacterized conserved protein compare
Psest_1940 -1.1 -3.0 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_3458 -1.1 -2.7 hypothetical protein compare
Psest_4183 -1.1 -1.4 PilZ domain. compare
Psest_2566 -1.1 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_2304 -1.1 -0.8 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_4095 -1.1 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_2285 -1.1 -2.6 ATP-dependent protease La compare
Psest_1907 -1.1 -1.1 hypothetical protein compare
Psest_1635 -1.1 -8.3 Signal transduction histidine kinase compare
Psest_2053 -1.1 -1.2 Uncharacterized low-complexity proteins compare
Psest_3754 -1.1 -2.3 Uncharacterized protein involved in response to NO compare
Psest_2001 -1.1 -1.1 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_0737 -1.1 -0.7 Cu(I)-responsive transcriptional regulator compare
Psest_1990 -1.1 -1.7 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Psest_0348 -1.1 -2.9 hypothetical protein compare
Psest_4082 -1.1 -2.0 hypothetical protein compare
Psest_0355 -1.0 -1.4 Glycine cleavage system regulatory protein compare
Psest_2047 -1.0 -2.6 Signal transduction histidine kinase compare
Psest_1844 -1.0 -7.2 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) conserved
Psest_2855 -1.0 -1.1 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1600 -1.0 -1.4 hypothetical protein compare
Psest_1567 -1.0 -2.3 Transcriptional regulator compare
Psest_2772 -1.0 -3.0 MIP family channel proteins compare
Psest_1920 -1.0 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_1444 -1.0 -2.9 Curli production assembly/transport component CsgF. compare
Psest_1184 -1.0 -1.7 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_3707 -1.0 -2.5 Transcriptional regulator compare
Psest_4197 -1.0 -2.5 general secretion pathway protein J compare
Psest_2975 -1.0 -1.4 tRNA_Arg_CCT compare
Psest_3020 -1.0 -2.9 Cell wall-associated hydrolases (invasion-associated proteins) compare
Psest_0093 -1.0 -2.2 Uncharacterized enzyme of phosphonate metabolism compare
Psest_3419 -1.0 -4.1 Predicted transcriptional regulators compare
Psest_4385 -1.0 -2.5 hypothetical protein compare
Psest_3222 -1.0 -1.2 Putative threonine efflux protein compare
Psest_1504 -1.0 -2.4 tol-pal system protein YbgF compare
Psest_2243 -1.0 -0.7 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_2647 -1.0 -1.4 SOS-response cell division inhibitor, blocks FtsZ ring formation compare
Psest_3727 -1.0 -2.3 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_3189 -1.0 -2.5 hypothetical protein compare
Psest_1837 -1.0 -3.2 Endoglucanase compare
Psest_0440 -1.0 -2.5 hypothetical protein compare
Psest_4100 -0.9 -2.9 Uncharacterized protein conserved in bacteria compare
Psest_3173 -0.9 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_2585 -0.9 -0.6 pseudouridylate synthase I compare
Psest_2953 -0.9 -1.0 Histone acetyltransferase compare
Psest_4088 -0.9 -1.9 Transcriptional regulators compare
Psest_1185 -0.9 -1.9 heavy metal response regulator compare
Psest_3659 -0.9 -1.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_4099 -0.9 -6.1 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component compare
Psest_2000 -0.9 -2.9 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1451 -0.9 -1.1 Uncharacterized ABC-type transport system, permease components compare
Psest_3013 -0.9 -1.5 cobyrinic acid a,c-diamide synthase compare
Psest_0719 -0.9 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_0400 -0.9 -2.4 Geranylgeranyl pyrophosphate synthase compare
Psest_0028 -0.9 -2.6 Coproporphyrinogen III oxidase compare
Psest_1227 -0.9 -1.4 Predicted SAM-dependent methyltransferase compare
Psest_4343 -0.9 -1.4 Protein of unknown function (DUF3301). compare
Psest_3832 -0.9 -1.0 hypothetical protein compare
Psest_2955 -0.9 -1.7 Predicted transcriptional regulator with C-terminal CBS domains compare
Psest_0644 -0.9 -2.1 siderophore ferric iron reductase, AHA_1954 family compare
Psest_2114 -0.9 -2.2 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_1809 -0.9 -4.6 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1924 -0.9 -6.2 adhesin-associated MmpL efflux pump (from data) compare
Psest_3178 -0.9 -1.8 formyltetrahydrofolate deformylase compare
Psest_1610 -0.9 -1.8 hypothetical protein compare
Psest_3443 -0.9 -3.3 Predicted acyltransferases compare
Psest_0558 -0.9 -0.6 urease, beta subunit compare
Psest_3371 -0.9 -3.9 type IV pilus modification protein PilV compare
Psest_0999 -0.9 -1.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3372 -0.9 -5.1 Tfp pilus assembly protein PilW compare
Psest_1899 -0.9 -3.2 ABC-type sugar transport systems, ATPase components compare
Psest_1628 -0.9 -1.8 hypothetical protein compare
Psest_4350 -0.9 -2.2 Transcriptional regulators of sugar metabolism compare
Psest_1819 -0.9 -6.7 Nucleoside-diphosphate-sugar epimerases compare


Specific Phenotypes

For 11 genes in this experiment

For stress Carbenicillin disodium salt in Pseudomonas stutzeri RCH2

For stress Carbenicillin disodium salt across organisms