Experiment set17IT039 for Pseudomonas stutzeri RCH2

Compare to:

LB with Cobalt chloride hexahydrate 0.08 mM

200 most important genes:

  gene name fitness t score description  
Psest_1814 -3.9 -20.4 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2025 -3.2 -1.2 cold shock domain protein CspD compare
Psest_2585 -3.2 -1.2 pseudouridylate synthase I compare
Psest_0542 -3.2 -9.8 AMP nucleosidase compare
Psest_2458 -3.1 -4.0 MoxR-like ATPases compare
Psest_1496 -3.0 -1.9 Holliday junction DNA helicase, RuvA subunit compare
Psest_0078 -3.0 -1.5 hypothetical protein compare
Psest_3148 -3.0 -1.4 hypothetical protein compare
Psest_3938 -2.9 -4.2 Uncharacterized protein conserved in bacteria compare
Psest_0277 -2.7 -2.0 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_0691 -2.6 -13.7 ribonuclease R compare
Psest_1012 -2.6 -5.2 Signal transduction histidine kinase compare
Psest_3926 -2.6 -12.3 GTP-binding protein TypA/BipA compare
Psest_0725 -2.5 -2.4 Negative regulator of beta-lactamase expression compare
Psest_4335 -2.4 -2.1 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_2945 -2.3 -1.7 septum site-determining protein MinC compare
Psest_0697 -2.2 -3.2 ribosomal protein L9 compare
Psest_3910 -2.2 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_2581 -2.2 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_1809 -2.2 -10.6 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_3247 -2.2 -1.4 Uncharacterized membrane protein compare
Psest_2561 -2.1 -1.1 hypothetical protein compare
Psest_2424 -2.0 -2.1 K+ transport systems, NAD-binding component compare
Psest_1659 -2.0 -3.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_4219 -2.0 -3.2 DNA polymerase I compare
Psest_4003 -1.9 -5.1 TIGR00153 family protein compare
Psest_3377 -1.9 -1.2 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_0498 -1.9 -1.8 ribosome small subunit-dependent GTPase A compare
Psest_4078 -1.7 -1.7 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_2872 -1.7 -2.4 protein RecA compare
Psest_1920 -1.7 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_3146 -1.7 -1.8 hypothetical protein compare
Psest_0398 -1.7 -8.5 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_2229 -1.6 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_1661 -1.6 -1.9 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3762 -1.6 -4.4 iron donor protein CyaY compare
Psest_0442 -1.6 -2.7 ATPases of the AAA+ class compare
Psest_2759 -1.6 -6.6 Co/Zn/Cd efflux system component conserved
Psest_1484 -1.6 -6.2 Thiol-disulfide isomerase and thioredoxins compare
Psest_2647 -1.6 -2.4 SOS-response cell division inhibitor, blocks FtsZ ring formation compare
Psest_1158 -1.6 -7.7 Predicted thiol oxidoreductase compare
Psest_2590 -1.6 -1.0 3-isopropylmalate dehydratase, small subunit compare
Psest_2153 -1.5 -4.3 formate dehydrogenase, gamma subunit compare
Psest_0260 -1.5 -1.6 Cell division protein compare
Psest_0243 -1.5 -1.0 hypothetical protein compare
Psest_1540 -1.5 -1.4 biotin-dependent carboxylase uncharacterized domain compare
Psest_3202 -1.5 -3.3 Flavodoxins compare
Psest_3565 -1.4 -1.4 hypothetical protein compare
Psest_2773 -1.4 -4.6 glycerol kinase compare
Psest_0514 -1.4 -4.2 lytic murein transglycosylase B compare
Psest_0097 -1.4 -1.9 phosphonates metabolism transcriptional regulator PhnF compare
Psest_3351 -1.4 -5.1 peptide chain release factor 3 compare
Psest_4149 -1.4 -2.2 fagellar hook-basal body proteins compare
Psest_4325 -1.4 -2.1 hypothetical protein compare
Psest_0796 -1.4 -2.5 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_3546 -1.4 -1.1 Phosphatidylglycerophosphatase A and related proteins compare
Psest_3100 -1.3 -1.6 RNA polymerase sigma factor RpoE compare
Psest_1884 -1.3 -1.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1159 -1.3 -4.4 Uncharacterized iron-regulated protein conserved
Psest_3236 -1.3 -2.0 hypothetical protein compare
Psest_3936 -1.3 -3.3 ATP-dependent protease HslVU, peptidase subunit compare
Psest_1157 -1.3 -3.9 Predicted periplasmic lipoprotein conserved
Psest_0515 -1.3 -3.4 rare lipoprotein A compare
Psest_1204 -1.3 -2.2 Transcriptional regulators compare
Psest_2104 -1.3 -0.9 IscR-regulated protein YhgI compare
Psest_0662 -1.3 -1.8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1704 -1.3 -1.2 Dehydrogenases (flavoproteins) compare
Psest_1804 -1.3 -1.8 Superfamily II DNA and RNA helicases compare
Psest_3367 -1.3 -1.2 translation initation factor SUI1, putative, prokaryotic compare
Psest_1463 -1.3 -0.9 SufE protein probably involved in Fe-S center assembly compare
Psest_3345 -1.3 -6.2 Sulfite reductase, alpha subunit (flavoprotein) compare
Psest_0684 -1.2 -3.7 GTP-binding protein HflX compare
Psest_1516 -1.2 -1.8 Uncharacterized lipoprotein compare
Psest_1813 -1.2 -5.7 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_1510 -1.2 -2.6 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0511 -1.2 -1.1 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_2771 -1.2 -2.0 Predicted membrane protein compare
Psest_4044 -1.2 -2.5 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0170 -1.1 -3.4 5,10-methenyltetrahydrofolate synthetase compare
Psest_0790 -1.1 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_2946 -1.1 -2.4 septum site-determining protein MinD compare
Psest_3031 -1.1 -0.6 hypothetical protein compare
Psest_0028 -1.1 -2.8 Coproporphyrinogen III oxidase compare
Psest_3014 -1.1 -1.6 cob(I)alamin adenosyltransferase compare
Psest_2266 -1.1 -2.3 hypothetical protein compare
Psest_2520 -1.1 -1.4 Predicted SAM-dependent methyltransferase compare
Psest_2613 -1.1 -1.0 hypothetical protein compare
Psest_1370 -1.1 -2.9 hypothetical protein compare
Psest_3344 -1.1 -3.9 ABC-type Co2+ transport system, periplasmic component compare
Psest_1994 -1.1 -2.3 Amidases related to nicotinamidase compare
Psest_2001 -1.1 -1.1 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3002 -1.1 -1.7 Putative translation initiation inhibitor, yjgF family compare
Psest_0759 -1.1 -1.2 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_3045 -1.0 -1.5 Cold shock proteins compare
Psest_0165 -1.0 -2.3 protein-export chaperone SecB compare
Psest_1691 -1.0 -1.8 aminodeoxychorismate lyase compare
Psest_2470 -1.0 -1.9 hypothetical protein compare
Psest_3439 -1.0 -3.9 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_0510 -1.0 -3.3 iojap-like ribosome-associated protein compare
Psest_0991 -1.0 -2.6 Predicted SAM-dependent methyltransferases compare
Psest_2500 -1.0 -1.7 hypothetical protein compare
Psest_1013 -1.0 -2.3 phosphoribosylamine--glycine ligase compare
Psest_1065 -1.0 -1.0 hypothetical protein compare
Psest_0503 -1.0 -1.3 Acyl dehydratase compare
Psest_3060 -1.0 -2.2 hypothetical protein compare
Psest_1772 -1.0 -2.4 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0592 -1.0 -1.6 hypothetical protein compare
Psest_1295 -1.0 -3.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3400 -1.0 -0.7 Copper resistance protein D. compare
Psest_1288 -1.0 -4.2 Putative multicopper oxidases compare
Psest_4170 -1.0 -1.3 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_3478 -0.9 -1.2 Cytochrome B561 compare
Psest_4080 -0.9 -2.3 Carbonic anhydrase compare
Psest_1431 -0.9 -2.3 hypothetical protein compare
Psest_4051 -0.9 -1.1 molybdenum-pterin binding domain compare
Psest_3828 -0.9 -0.9 zinc-binding alcohol dehydrogenase family protein compare
Psest_4190 -0.9 -4.9 Nucleoside-diphosphate-sugar epimerases conserved
Psest_0299 -0.9 -1.9 Chemotaxis signal transduction protein compare
Psest_3496 -0.9 -0.8 Predicted metal-binding protein compare
Psest_1279 -0.9 -2.0 hypothetical protein compare
Psest_0064 -0.9 -1.6 Transcriptional regulator compare
Psest_2645 -0.9 -3.6 Transcriptional regulator compare
Psest_2901 -0.9 -1.1 hypothetical protein compare
Psest_3850 -0.9 -0.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1176 -0.9 -2.5 Urea transporter compare
Psest_0086 -0.9 -2.1 hypothetical protein compare
Psest_3342 -0.9 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_0842 -0.9 -1.0 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_2177 -0.9 -2.7 Protein of unknown function (DUF1652). compare
Psest_0014 -0.9 -1.7 PilZ domain. compare
Psest_2992 -0.9 -2.6 Uncharacterized conserved protein compare
Psest_1551 -0.9 -1.6 Integral membrane protein, interacts with FtsH compare
Psest_2648 -0.9 -1.4 hypothetical protein compare
Psest_2646 -0.9 -1.4 SOS regulatory protein LexA compare
Psest_1406 -0.9 -2.1 His Kinase A (phosphoacceptor) domain./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_2975 -0.9 -1.5 tRNA_Arg_CCT compare
Psest_1052 -0.9 -2.7 Uncharacterized protein involved in chromosome partitioning compare
Psest_3151 -0.9 -1.2 hypothetical protein compare
Psest_0368 -0.9 -1.6 Transcriptional regulator compare
Psest_1626 -0.9 -2.5 Predicted integral membrane protein compare
Psest_1852 -0.9 -3.3 Uncharacterized conserved protein compare
Psest_0740 -0.8 -1.2 Transcriptional regulator compare
Psest_0520 -0.8 -0.5 hypothetical protein compare
Psest_3338 -0.8 -0.8 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_3056 -0.8 -1.8 hypothetical protein compare
Psest_2288 -0.8 -2.2 trigger factor compare
Psest_0644 -0.8 -2.1 siderophore ferric iron reductase, AHA_1954 family compare
Psest_0950 -0.8 -2.0 hypothetical protein compare
Psest_1947 -0.8 -0.8 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0970 -0.8 -1.4 hypothetical protein compare
Psest_2937 -0.8 -2.1 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_2810 -0.8 -3.3 5'/3'-nucleotidase SurE compare
Psest_0805 -0.8 -1.3 hypothetical protein compare
Psest_2892 -0.8 -1.4 Transcriptional regulator compare
Psest_1313 -0.8 -1.0 Uncharacterized conserved small protein compare
Psest_1486 -0.8 -1.6 hypothetical protein compare
Psest_0334 -0.8 -1.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2308 -0.8 -0.6 Predicted Fe-S protein compare
Psest_1901 -0.8 -2.0 hypothetical protein compare
Psest_2285 -0.8 -2.2 ATP-dependent protease La compare
Psest_2384 -0.8 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_2772 -0.8 -2.4 MIP family channel proteins compare
Psest_4345 -0.8 -4.2 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_1439 -0.8 -3.5 Transcriptional regulator compare
Psest_2580 -0.8 -2.6 Uncharacterized membrane protein, required for colicin V production compare
Psest_1058 -0.8 -2.2 ribosomal-protein-alanine acetyltransferase compare
Psest_0281 -0.8 -3.3 Dynamin family. compare
Psest_1870 -0.8 -0.7 Transcriptional regulators compare
Psest_3070 -0.8 -1.5 3-oxoadipyl-CoA thiolase compare
Psest_0193 -0.8 -0.8 conserved hypothetical protein compare
Psest_1775 -0.8 -2.0 Predicted ATPase (AAA+ superfamily) compare
Psest_3853 -0.8 -1.6 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_2333 -0.8 -0.6 Protein of unknown function (DUF3359). compare
Psest_2698 -0.8 -1.8 benzoate 1,2-dioxygenase, small subunit compare
Psest_1491 -0.8 -1.3 Cold shock proteins compare
Psest_1156 -0.8 -2.6 outer membrane component of uptake system, probably for ferrous iron (from data) conserved
Psest_2863 -0.8 -2.3 Transcriptional regulator compare
Psest_1594 -0.8 -2.7 Predicted metal-binding protein compare
Psest_3343 -0.8 -1.9 Predicted periplasmic protein compare
Psest_0845 -0.8 -0.5 hypothetical protein compare
Psest_3518 -0.7 -0.6 Transcriptional regulators compare
Psest_0692 -0.7 -1.5 rRNA methylase, putative, group 3 compare
Psest_4336 -0.7 -3.3 Uncharacterized iron-regulated membrane protein compare
Psest_1985 -0.7 -3.4 histidinol-phosphate aminotransferase compare
Psest_1087 -0.7 -0.7 uncharacterized peroxidase-related enzyme compare
Psest_1796 -0.7 -1.8 Predicted NAD/FAD-dependent oxidoreductase compare
Psest_2046 -0.7 -2.5 hypothetical protein compare
Psest_4343 -0.7 -1.3 Protein of unknown function (DUF3301). compare
Psest_3836 -0.7 -1.5 L-lactate permease compare
Psest_3810 -0.7 -0.7 orotate phosphoribosyltransferase compare
Psest_3921 -0.7 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_3426 -0.7 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_3562 -0.7 -1.3 ABC-type antimicrobial peptide transport system, ATPase component compare
Psest_2764 -0.7 -0.7 hypothetical protein compare
Psest_0678 -0.7 -1.4 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_3904 -0.7 -0.9 hypothetical protein compare
Psest_2218 -0.7 -0.9 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_1656 -0.7 -1.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_1177 -0.7 -2.5 pyruvate kinase compare
Psest_0376 -0.7 -1.9 glucarate dehydratase compare


Specific Phenotypes

For 3 genes in this experiment

For stress Cobalt chloride hexahydrate in Pseudomonas stutzeri RCH2

For stress Cobalt chloride hexahydrate across organisms