Experiment set17IT038 for Sinorhizobium meliloti 1021

Compare to:

Xylobiose carbon source

200 most important genes:

  gene name fitness t score description  
SMc02572 -9.7 -6.5 imidazole glycerol phosphate synthase subunit HisH compare
SMc02123 -8.6 -3.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc01726 -8.4 -5.8 acetylglutamate kinase compare
SMc02899 -8.2 -5.7 prephenate dehydratase compare
SMc00495 -8.0 -5.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc01054 -7.7 -5.3 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc01843 -7.7 -9.1 5,10-methylenetetrahydrofolate reductase compare
SMc00614 -7.6 -5.3 phosphoribosylglycinamide formyltransferase compare
SMc03797 -7.6 -9.0 homoserine O-succinyltransferase compare
SMc04045 -7.4 -5.1 dihydroxy-acid dehydratase compare
SMc00993 -7.4 -5.1 phosphoribosylamine--glycine ligase compare
SMc02717 -7.3 -7.2 2-isopropylmalate synthase compare
SMc00918 -7.3 -5.0 ATP phosphoribosyltransferase regulatory subunit compare
SMc01494 -7.3 -10.9 phosphoserine phosphatase compare
SMc02569 -7.2 -5.0 imidazole glycerol phosphate synthase subunit HisF compare
SMc00711 -7.0 -4.9 cyclohexadienyl dehydrogenase compare
SMc01801 -7.0 -4.8 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc04405 -6.9 -9.4 3-isopropylmalate dehydrogenase compare
SMc02217 -6.8 -4.7 O-succinylhomoserine sulfhydrylase compare
SMc03112 -6.8 -13.0 B12-dependent methionine synthase compare
SMc00488 -6.7 -17.8 phosphoribosylformylglycinamidine synthase II compare
SMc02137 -6.7 -4.6 ornithine carbamoyltransferase compare
SMc01004 -6.7 -11.1 phosphoribosyl-AMP cyclohydrolase compare
SMc04028 -6.6 -12.7 glutamate synthase compare
SMc04026 -6.5 -10.8 glutamate synthase compare
SMc02474 -6.3 -3.5 ABC transporter ATP-binding protein compare
SMc00615 -6.3 -10.4 phosphoribosylaminoimidazole synthetase compare
SMc03823 -6.1 -10.8 isopropylmalate isomerase large subunit compare
SMc01431 -6.0 -14.1 acetolactate synthase 3 catalytic subunit compare
SMc03895 -6.0 -16.5 pyruvate carboxylase compare
SMc00640 -5.9 -9.9 phosphoserine aminotransferase compare
SMc02124 -5.9 -14.3 nitrite reductase compare
SMc00131 -5.9 -16.6 transcriptional regulator compare
SMc02245 -5.8 -4.0 dihydroorotate dehydrogenase 2 compare
SMc00917 -5.8 -6.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc03777 -5.7 -7.8 gamma-glutamyl phosphate reductase compare
SMc00092 -5.6 -14.0 phosphoadenosine phosphosulfate reductase compare
SMc00554 -5.6 -8.5 amidophosphoribosyltransferase compare
SMc02425 -5.5 -3.8 transcriptional regulator compare
SMc00293 -5.3 -12.1 homoserine dehydrogenase compare
SMc04002 -5.2 -6.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc00493 -5.1 -7.7 phosphoribosylformylglycinamidine synthase I compare
SMc02570 -5.1 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc00494 -5.0 -2.8 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc00090 -4.9 -12.3 sulfate adenylyltransferase compare
SMc02471 -4.9 -16.5 periplasmic binding ABC transporter protein conserved
SMc04088 -4.8 -8.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc00091 -4.8 -12.2 sulfate adenylyltransferase compare
SMc02766 -4.7 -3.2 tryptophan synthase subunit beta compare
SMc02767 -4.7 -3.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc02468 -4.6 -11.8 hypothetical protein conserved
SMc00236 -4.6 -3.2 Indole-3-glycerol phosphate synthase compare
SMc03164 -4.6 -14.1 Xylulose kinase (EC 2.7.1.17) (from data) conserved
SMc01053 -4.5 -5.5 siroheme synthase compare
SMc02472 -4.5 -13.7 ABC transporter permease conserved
SMc03070 -4.5 -8.5 glucose-6-phosphate 1-dehydrogenase compare
SMc02725 -4.4 -6.7 anthranilate synthase compare
SMc02755 -4.4 -6.0 S-adenosyl-L-homocysteine hydrolase compare
SMc02473 -4.4 -14.8 ABC transporter permease conserved
SMc02307 -4.3 -8.8 histidinol dehydrogenase compare
SM_b21175 -4.3 -4.5 phosphate uptake ABC transporter permease compare
SMc02469 -4.2 -9.5 oxidoreductase conserved
SMc00235 -4.2 -2.9 anthranilate phosphoribosyltransferase compare
SMc00017 -4.2 -2.3 homoserine kinase compare
SMa1635 -4.1 -1.6 hypothetical protein compare
SMc01770 -3.9 -1.7 serine hydroxymethyltransferase compare
SMc02166 -3.9 -8.9 dihydroorotase compare
SMc00412 -3.8 -2.6 orotidine 5'-phosphate decarboxylase compare
SMc03163 -3.8 -12.4 Xylose isomerase (EC 5.3.1.5) (from data) conserved
SMc03795 -3.8 -2.0 isopropylmalate isomerase small subunit compare
SMc00815 -3.7 -2.5 inosine 5'-monophosphate dehydrogenase compare
SMc00294 -3.7 -13.6 aminotransferase compare
SMc01360 -3.6 -2.5 aspartate carbamoyltransferase catalytic subunit compare
SM_b21174 -3.6 -6.8 phosphate uptake ABC transporter permease compare
SMc04001 -3.6 -2.0 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc01880 -3.5 -2.4 pantoate--beta-alanine ligase compare
SM_b21176 -3.5 -5.8 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc03776 -3.5 -3.2 gamma-glutamyl kinase compare
SMc02165 -3.5 -4.1 orotate phosphoribosyltransferase compare
SMc00641 -3.5 -5.0 D-3-phosphoglycerate dehydrogenase compare
SMc00876 -3.4 -6.0 ATP-binding MRP protein compare
SMc02765 -3.2 -7.7 tryptophan synthase subunit alpha compare
SMc04346 -3.2 -3.9 ketol-acid reductoisomerase compare
SMc00982 -3.2 -6.9 dioxygenase compare
SMc01361 -3.2 -3.0 dihydroorotase compare
SMc00450 -3.2 -2.1 protoheme IX farnesyltransferase compare
SMc02707 -3.1 -5.2 hypothetical protein compare
SM_b21177 -3.1 -6.7 phosphate uptake ABC transporter ATP-binding protein compare
SMc02246 -3.0 -1.2 hypothetical protein compare
SMc02858 -3.0 -1.1 chaperone protein DnaJ compare
SMc02138 -3.0 -3.6 acetylornithine transaminase compare
SMc03165 -2.8 -3.7 Novel Xylose regulator from LacI family (from data) compare
SMc03981 -2.7 -6.7 phosphoglycerate kinase compare
SMc03826 -2.7 -1.9 argininosuccinate synthase compare
SMc02753 -2.7 -1.8 PTS system transporter subunit IIA compare
SMc03069 -2.7 -1.9 6-phosphogluconolactonase compare
SMc03979 -2.6 -3.1 glyceraldehyde-3-phosphate dehydrogenase compare
SMc01842 -2.5 -2.4 methyltransferase transcription regulator protein compare
SMc03978 -2.5 -1.7 transketolase compare
SMc03229 -2.5 -2.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc01430 -2.3 -3.7 acetolactate synthase 3 regulatory subunit compare
SMc02435 -2.3 -2.7 methyltransferase compare
SMc01206 -2.2 -2.1 queuine tRNA-ribosyltransferase compare
SMc00414 -2.2 -11.7 hypothetical protein compare
SMc02983 -2.1 -8.1 ornithine, DAP, or arginine decarboxylase compare
SMc01028 -2.1 -13.8 phosphopyruvate hydratase compare
SMc00405 -2.1 -8.6 hypothetical protein compare
SMc01881 -2.1 -3.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc02112 -2.1 -7.8 hypothetical protein compare
SMc02141 -2.0 -3.8 phosphate transporter PhoU compare
SMc00511 -2.0 -4.0 D-ribulose-5-phosphate 3-epimerase compare
SMc01124 -2.0 -6.0 PII uridylyl-transferase compare
SMc03763 -1.9 -1.3 cytosine-specific methyltransferase compare
SMa1765 -1.9 -1.6 hypothetical protein compare
SMc00451 -1.8 -6.1 processing protease compare
SMc04005 -1.8 -7.3 pyruvate kinase compare
SMc01568 -1.8 -2.1 hypothetical protein compare
SMc03065 -1.8 -9.2 ABC transporter for D-maltose/D-trehalose/sucrose, ATPase component (AglK) (from data) compare
SMc02172 -1.8 -8.8 transcriptional regulator compare
SMc02574 -1.7 -2.9 imidazoleglycerol-phosphate dehydratase compare
SMc02640 -1.7 -4.7 UDP-glucuronic acid epimerase compare
SMc00073 -1.7 -2.9 hypothetical protein compare
SMc03062 -1.7 -6.6 ABC transporter for D-maltose/D-trehalose/sucrose, permease component 1 (AglF) (from data) compare
SMc01501 -1.7 -2.9 mannitol 2-dehydrogenase compare
SMc00928 -1.6 -1.5 signal peptide protein compare
SM_b20483 -1.6 -9.3 catabolite repressor protein compare
SMc00010 -1.6 -1.8 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc01578 -1.6 -9.5 aspartate aminotransferase compare
SMc01569 -1.5 -0.8 carbamoyl phosphate synthase small subunit compare
SMc00012 -1.5 -1.8 cytochrome C oxidase assembly protein compare
SMc01215 -1.5 -1.0 carbamoyl phosphate synthase large subunit compare
SMc03061 -1.5 -9.6 ABC transporter for D-maltose/D-trehalose/sucrose, substrate-binding component (AglE) (from data) compare
SM_b20105 -1.5 -2.0 transcriptional regulator compare
SMc03801 -1.4 -2.3 thioredoxin protein compare
SMa5010 -1.4 -1.6 hypothetical protein compare
SMa0789 -1.3 -3.2 GntR family transcriptional regulator compare
SMc03063 -1.3 -10.3 ABC transporter for D-maltose/D-trehalose/sucrose, permease component 2 (AglG) (from data) compare
SMc02234 -1.3 -2.3 hypothetical protein compare
SMc02434 -1.3 -3.0 hypothetical protein compare
SMc02724 -1.3 -3.7 hypothetical protein compare
SMc00334 -1.3 -1.0 cytidylate kinase compare
SMc02225 -1.3 -5.1 hypothetical protein compare
SMa0222 -1.3 -2.5 GntR family transcriptional regulator compare
SMc02407 -1.3 -5.1 hypothetical protein compare
SMc04348 -1.3 -1.3 transcriptional regulator compare
SMc02362 -1.3 -1.8 cytochrome c-type biogenesis protein CcmE compare
SMc02659 -1.3 -1.9 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein compare
SMa1770 -1.3 -1.3 hypothetical protein compare
SMc00981 -1.2 -5.4 ferredoxin protein compare
SMc00619 -1.2 -1.6 hypothetical protein compare
SMc04085 -1.2 -4.1 hypothetical protein compare
SMc02055 -1.2 -2.0 phytoene synthase compare
SMc00838 -1.2 -4.9 hypothetical protein compare
SMc02495 -1.2 -0.6 translaldolase compare
SMc02838 -1.2 -4.1 phosphoglyceromutase compare
SMc02558 -1.2 -5.0 hypothetical protein compare
SMc04000 -1.2 -0.8 hypothetical protein compare
SM_b21501 -1.1 -2.8 hypothetical protein compare
SMc03849 -1.1 -0.7 heme exporter C (cytochrome C-type biogenesis protein) transmembrane compare
SMc00709 -1.1 -3.2 hypothetical protein compare
SMc02470 -1.1 -2.7 transcriptional regulator compare
SMc00987 -1.1 -2.5 hypothetical protein compare
SMa1052 -1.1 -1.6 hypothetical protein compare
SMc01164 -1.0 -5.9 hypothetical protein compare
SMc02164 -1.0 -2.6 fructokinase compare
SMc03880 -1.0 -5.9 hypothetical protein compare
SMc03899 -1.0 -1.1 hypothetical protein compare
SMa0740 -1.0 -1.4 hypothetical protein compare
SMc04454 -1.0 -4.8 ABC transporter ATP-binding protein compare
SMc00361 -1.0 -2.4 hypothetical protein compare
SMc00080 -1.0 -2.6 hypothetical protein compare
SMc02050 -1.0 -2.4 trigger factor compare
SMc00321 -1.0 -4.8 tRNA pseudouridine synthase B compare
SMc00622 -1.0 -4.8 ribonuclease D protein compare
SM_b20509 -1.0 -1.6 transcriptional regulator compare
SMc01495 -1.0 -3.5 transcriptional regulator compare
SMa1442 -1.0 -3.1 GntR family transcriptional regulator compare
SMc00088 -1.0 -1.5 hypothetical protein compare
SMc01441 -1.0 -3.6 membrane bound protease compare
SMc02308 -1.0 -5.6 hypothetical protein compare
SM_b21096 -0.9 -1.2 amino acid transporter ABC transporter ATP-binding protein compare
SM_b21131 -0.9 -6.6 sulfate ABC transporter permease compare
SMc02047 -0.9 -2.7 glycine cleavage system aminomethyltransferase T compare
SMc00712 -0.9 -1.5 hypothetical protein compare
SM_b20323 -0.9 -1.0 transcriptional regulator compare
SMa1073 -0.9 -1.5 TRm23b IS ATP-binding protein compare
SMc00353 -0.9 -2.0 transmembrane protein compare
SMc02521 -0.9 -3.4 glycerol-3-phosphate regulon repressor transcription regulator protein compare
SMc01440 -0.9 -3.5 hydrolase serine protease transmembrane protein compare
SM_b20909 -0.9 -1.9 hypothetical protein compare
SMc01933 -0.9 -1.3 hypothetical protein compare
SM_b20312 -0.9 -5.4 dihydroxyacetone kinase compare
SMa2020 -0.9 -3.6 Transcriptional regulator compare
SMc03993 -0.9 -4.2 hypothetical protein compare
SMc00025 -0.9 -4.4 pyruvate phosphate dikinase compare
SMc04233 -0.9 -2.2 hypothetical protein compare
SMc03974 -0.9 -3.1 hypothetical protein compare
SM_b20314 -0.9 -3.6 glycerone kinase compare
SMc02147 -0.9 -2.7 phosphate regulon sensor histidine kinase transmembrane protein compare
SMa0144 -0.9 -0.6 hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Xylobiose in Sinorhizobium meliloti 1021

For carbon source Xylobiose across organisms