Experiment set17IT038 for Sinorhizobium meliloti 1021

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Xylobiose carbon source

Group: carbon source
Media: RCH2_defined_noCarbon + Xylobiose (10 mM)
Culturing: Smeli_ML6a, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
By: Valentine on 10/5/22
Media components: 0.25 g/L Ammonium chloride, 0.1 g/L Potassium Chloride, 0.6 g/L Sodium phosphate monobasic monohydrate, 30 mM PIPES sesquisodium salt, Wolfe's mineral mix (0.03 g/L Magnesium Sulfate Heptahydrate, 0.015 g/L Nitrilotriacetic acid, 0.01 g/L Sodium Chloride, 0.005 g/L Manganese (II) sulfate monohydrate, 0.001 g/L Cobalt chloride hexahydrate, 0.001 g/L Zinc sulfate heptahydrate, 0.001 g/L Calcium chloride dihydrate, 0.001 g/L Iron (II) sulfate heptahydrate, 0.00025 g/L Nickel (II) chloride hexahydrate, 0.0002 g/L Aluminum potassium sulfate dodecahydrate, 0.0001 g/L Copper (II) sulfate pentahydrate, 0.0001 g/L Boric Acid, 0.0001 g/L Sodium Molybdate Dihydrate, 0.003 mg/L Sodium selenite pentahydrate), Wolfe's vitamin mix (0.1 mg/L Pyridoxine HCl, 0.05 mg/L 4-Aminobenzoic acid, 0.05 mg/L Lipoic acid, 0.05 mg/L Nicotinic Acid, 0.05 mg/L Riboflavin, 0.05 mg/L Thiamine HCl, 0.05 mg/L calcium pantothenate, 0.02 mg/L biotin, 0.02 mg/L Folic Acid, 0.001 mg/L Cyanocobalamin)

Specific Phenotypes

For 8 genes in this experiment

For carbon source Xylobiose in Sinorhizobium meliloti 1021

For carbon source Xylobiose across organisms

SEED Subsystems

Subsystem #Specific
Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization 2
Xylose utilization 2
D-ribose utilization 1
Fructooligosaccharides(FOS) and Raffinose Utilization 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
D-xylose degradation I 2 2 2
xylitol degradation I 2 2 1
D-arabinitol degradation I 2 1 1
superpathway of glucose and xylose degradation 17 15 2
superpathway of pentose and pentitol degradation 42 21 2