Experiment set17IT037 for Pseudomonas stutzeri RCH2

Compare to:

LB with Cobalt chloride hexahydrate 0.06 mM

200 most important genes:

  gene name fitness t score description  
Psest_1496 -4.3 -1.8 Holliday junction DNA helicase, RuvA subunit compare
Psest_1814 -4.3 -20.0 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2229 -3.1 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_3565 -3.0 -2.1 hypothetical protein compare
Psest_2872 -3.0 -3.0 protein RecA compare
Psest_3938 -2.9 -4.7 Uncharacterized protein conserved in bacteria compare
Psest_1920 -2.8 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_1809 -2.7 -13.3 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_2025 -2.6 -1.1 cold shock domain protein CspD compare
Psest_0028 -2.3 -6.3 Coproporphyrinogen III oxidase compare
Psest_3926 -2.3 -11.6 GTP-binding protein TypA/BipA compare
Psest_3146 -2.3 -2.0 hypothetical protein compare
Psest_0697 -2.2 -3.4 ribosomal protein L9 compare
Psest_4219 -2.2 -3.2 DNA polymerase I compare
Psest_2088 -2.2 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_0725 -2.1 -2.4 Negative regulator of beta-lactamase expression compare
Psest_0740 -2.1 -2.3 Transcriptional regulator compare
Psest_0259 -2.1 -1.2 cell division ATP-binding protein FtsE compare
Psest_0558 -2.1 -1.0 urease, beta subunit compare
Psest_1158 -2.0 -9.6 Predicted thiol oxidoreductase compare
Psest_0542 -2.0 -8.1 AMP nucleosidase compare
Psest_1159 -2.0 -8.8 Uncharacterized iron-regulated protein conserved
Psest_3850 -2.0 -0.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0212 -2.0 -2.6 exodeoxyribonuclease V, gamma subunit compare
Psest_0691 -2.0 -11.1 ribonuclease R compare
Psest_3042 -1.9 -1.3 Nitrate reductase cytochrome c-type subunit compare
Psest_1870 -1.8 -1.3 Transcriptional regulators compare
Psest_4078 -1.8 -2.4 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_0398 -1.7 -5.3 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_2442 -1.7 -2.5 hypothetical protein compare
Psest_0207 -1.7 -2.3 hypothetical protein compare
Psest_0601 -1.7 -1.6 hypothetical protein compare
Psest_1012 -1.7 -3.7 Signal transduction histidine kinase compare
Psest_1661 -1.7 -1.9 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3031 -1.7 -0.8 hypothetical protein compare
Psest_1999 -1.6 -0.9 pseudouridine synthase compare
Psest_4335 -1.6 -2.0 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_3100 -1.6 -1.1 RNA polymerase sigma factor RpoE compare
Psest_3531 -1.6 -1.5 Peptidase propeptide and YPEB domain. compare
Psest_4190 -1.5 -8.9 Nucleoside-diphosphate-sugar epimerases conserved
Psest_1704 -1.5 -1.0 Dehydrogenases (flavoproteins) compare
Psest_3048 -1.5 -2.5 hypothetical protein compare
Psest_0097 -1.5 -1.7 phosphonates metabolism transcriptional regulator PhnF compare
Psest_2333 -1.4 -0.9 Protein of unknown function (DUF3359). compare
Psest_4134 -1.4 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_3092 -1.4 -1.7 ribonuclease III, bacterial compare
Psest_0346 -1.4 -2.4 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_1176 -1.4 -3.7 Urea transporter compare
Psest_0260 -1.3 -1.6 Cell division protein compare
Psest_0296 -1.3 -5.0 glutathione synthetase, prokaryotic compare
Psest_3145 -1.3 -1.2 hypothetical protein compare
Psest_0678 -1.3 -4.2 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_2945 -1.3 -1.2 septum site-determining protein MinC compare
Psest_2104 -1.3 -0.9 IscR-regulated protein YhgI compare
Psest_0243 -1.3 -1.1 hypothetical protein compare
Psest_0889 -1.2 -3.2 Lactoylglutathione lyase and related lyases compare
Psest_4044 -1.2 -2.7 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0310 -1.2 -2.5 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2901 -1.2 -1.5 hypothetical protein compare
Psest_4191 -1.2 -2.6 Transcriptional regulator compare
Psest_2470 -1.2 -2.2 hypothetical protein compare
Psest_0164 -1.2 -0.7 Glutaredoxin, GrxC family compare
Psest_2570 -1.2 -3.8 Transcriptional regulator compare
Psest_0805 -1.2 -2.4 hypothetical protein compare
Psest_1813 -1.2 -5.1 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_0281 -1.2 -4.4 Dynamin family. compare
Psest_3377 -1.2 -0.9 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3084 -1.2 -1.8 methyltransferase, putative compare
Psest_2278 -1.2 -2.2 coenzyme PQQ biosynthesis protein PqqD compare
Psest_0015 -1.2 -1.4 Tetratricopeptide repeat. compare
Psest_0515 -1.2 -3.0 rare lipoprotein A compare
Psest_3367 -1.2 -1.2 translation initation factor SUI1, putative, prokaryotic compare
Psest_4128 -1.2 -1.2 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3301 -1.1 -2.2 Predicted transcriptional regulator, BolA superfamily compare
Psest_1230 -1.1 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_2308 -1.1 -0.9 Predicted Fe-S protein compare
Psest_0501 -1.1 -2.6 Predicted nucleoside-diphosphate-sugar epimerases compare
Psest_3400 -1.1 -0.9 Copper resistance protein D. compare
Psest_3962 -1.1 -1.3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_3546 -1.1 -0.8 Phosphatidylglycerophosphatase A and related proteins compare
Psest_1111 -1.1 -3.0 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_2605 -1.1 -1.8 transcriptional activator RfaH compare
Psest_3910 -1.1 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_3045 -1.1 -1.2 Cold shock proteins compare
Psest_0999 -1.1 -1.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1871 -1.0 -5.7 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_3270 -1.0 -1.7 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_0849 -1.0 -5.2 6-phosphogluconate dehydratase compare
Psest_0297 -1.0 -3.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_4405 -1.0 -1.5 hypothetical protein compare
Psest_3904 -1.0 -1.4 hypothetical protein compare
Psest_1510 -1.0 -2.0 Putative Zn-dependent protease, contains TPR repeats compare
Psest_1804 -1.0 -1.6 Superfamily II DNA and RNA helicases compare
Psest_1065 -1.0 -1.0 hypothetical protein compare
Psest_3838 -1.0 -2.2 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_3039 -1.0 -0.8 periplasmic nitrate reductase, NapE protein compare
Psest_2946 -1.0 -2.2 septum site-determining protein MinD compare
Psest_0759 -0.9 -1.1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_0959 -0.9 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_1484 -0.9 -5.1 Thiol-disulfide isomerase and thioredoxins compare
Psest_4003 -0.9 -3.0 TIGR00153 family protein compare
Psest_2240 -0.9 -1.1 hypothetical protein compare
Psest_0218 -0.9 -1.9 Acyl-CoA hydrolase compare
Psest_2285 -0.9 -2.3 ATP-dependent protease La compare
Psest_2384 -0.9 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_1054 -0.9 -4.8 Diaminopimelate decarboxylase compare
Psest_0511 -0.9 -1.2 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_1087 -0.9 -0.7 uncharacterized peroxidase-related enzyme compare
Psest_0498 -0.9 -1.0 ribosome small subunit-dependent GTPase A compare
Psest_0170 -0.9 -3.1 5,10-methenyltetrahydrofolate synthetase compare
Psest_0508 -0.9 -3.5 gamma-glutamyl phosphate reductase compare
Psest_0533 -0.9 -2.3 Sel1 repeat. compare
Psest_2123 -0.9 -1.2 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_2810 -0.9 -2.7 5'/3'-nucleotidase SurE compare
Psest_2764 -0.9 -0.8 hypothetical protein compare
Psest_0442 -0.9 -2.4 ATPases of the AAA+ class compare
Psest_1383 -0.9 -2.4 DNA topoisomerase III, bacteria and conjugative plasmid compare
Psest_2911 -0.9 -1.0 Protein of unknown function (DUF2945). compare
Psest_0050 -0.9 -1.9 Predicted acetyltransferase compare
Psest_0417 -0.9 -1.6 Acyl-CoA dehydrogenases compare
Psest_1463 -0.9 -0.7 SufE protein probably involved in Fe-S center assembly compare
Psest_0344 -0.9 -3.2 Superfamily II DNA and RNA helicases compare
Psest_2976 -0.9 -0.8 hypothetical protein compare
Psest_1013 -0.9 -2.1 phosphoribosylamine--glycine ligase compare
Psest_4371 -0.8 -1.6 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_2855 -0.8 -0.9 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1288 -0.8 -3.8 Putative multicopper oxidases compare
Psest_0078 -0.8 -0.8 hypothetical protein compare
Psest_2759 -0.8 -3.2 Co/Zn/Cd efflux system component conserved
Psest_0844 -0.8 -2.5 High-affinity Fe2+/Pb2+ permease compare
Psest_3777 -0.8 -1.2 diguanylate cyclase (GGDEF) domain compare
Psest_3129 -0.8 -0.6 tyrosine recombinase XerD compare
Psest_2645 -0.8 -2.9 Transcriptional regulator compare
Psest_3810 -0.8 -0.8 orotate phosphoribosyltransferase compare
Psest_1388 -0.8 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_3247 -0.8 -0.9 Uncharacterized membrane protein compare
Psest_1856 -0.8 -1.4 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_2711 -0.8 -1.5 PilZ domain. compare
Psest_1149 -0.8 -1.3 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_2304 -0.8 -0.7 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_2626 -0.8 -1.9 Flp pilus assembly protein CpaB compare
Psest_1142 -0.8 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_1986 -0.8 -0.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_1157 -0.8 -2.8 Predicted periplasmic lipoprotein conserved
Psest_3762 -0.8 -2.3 iron donor protein CyaY compare
Psest_4220 -0.8 -1.7 Protein of unknown function (DUF2782). compare
Psest_4315 -0.8 -2.1 ABC-type metal ion transport system, permease component compare
Psest_0209 -0.8 -1.2 membrane protein AbrB duplication compare
Psest_0298 -0.8 -2.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0782 -0.8 -2.6 Transcriptional regulator of aromatic amino acids metabolism compare
Psest_4243 -0.8 -1.3 type VI secretion lipoprotein, VC_A0113 family compare
Psest_0823 -0.8 -1.5 Transcriptional regulators compare
Psest_4301 -0.8 -2.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2067 -0.8 -0.6 ABC-type oligopeptide transport system, periplasmic component compare
Psest_4370 -0.8 -1.6 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_4098 -0.8 -1.8 Superfamily I DNA and RNA helicases compare
Psest_1185 -0.8 -1.5 heavy metal response regulator compare
Psest_1659 -0.8 -1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0514 -0.7 -2.3 lytic murein transglycosylase B compare
Psest_3879 -0.7 -2.4 Curlin associated repeat. compare
Psest_1947 -0.7 -0.7 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_3123 -0.7 -1.5 dihydroorotase, homodimeric type compare
Psest_0101 -0.7 -2.7 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_1058 -0.7 -2.1 ribosomal-protein-alanine acetyltransferase compare
Psest_1081 -0.7 -2.7 hypothetical protein compare
Psest_4298 -0.7 -0.6 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_4345 -0.7 -3.6 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_3007 -0.7 -2.9 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase compare
Psest_1628 -0.7 -1.1 hypothetical protein compare
Psest_3745 -0.7 -1.4 Uncharacterized enzyme of heme biosynthesis compare
Psest_1612 -0.7 -1.5 ABC-type multidrug transport system, ATPase component compare
Psest_1227 -0.7 -1.9 Predicted SAM-dependent methyltransferase compare
Psest_4411 -0.7 -2.6 Phage terminase, small subunit compare
Psest_1428 -0.7 -1.3 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_3070 -0.7 -1.4 3-oxoadipyl-CoA thiolase compare
Psest_1543 -0.7 -2.1 Predicted transcription regulator, contains HTH domain (MarR family) compare
Psest_0673 -0.7 -1.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_0086 -0.7 -1.3 hypothetical protein compare
Psest_3236 -0.7 -1.6 hypothetical protein compare
Psest_0563 -0.7 -1.5 urea ABC transporter, ATP-binding protein UrtE compare
Psest_3921 -0.7 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0822 -0.7 -1.8 Transcriptional regulators compare
Psest_1434 -0.7 -2.3 NADPH:quinone reductase and related Zn-dependent oxidoreductases compare
Psest_4316 -0.7 -1.7 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_1594 -0.7 -2.2 Predicted metal-binding protein compare
Psest_3345 -0.7 -3.7 Sulfite reductase, alpha subunit (flavoprotein) compare
Psest_3001 -0.7 -2.0 molybdenum ABC transporter, ATP-binding protein compare
Psest_3128 -0.7 -1.9 Protein-disulfide isomerase compare
Psest_1479 -0.7 -2.4 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_3322 -0.7 -5.1 TIGR02099 family protein compare
Psest_0506 -0.7 -1.9 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Psest_1877 -0.7 -1.4 AraC-type DNA-binding domain-containing proteins compare
Psest_2613 -0.7 -0.9 hypothetical protein compare
Psest_2044 -0.7 -1.7 ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system compare
Psest_1471 -0.7 -1.6 Predicted membrane protein compare
Psest_4258 -0.7 -1.8 ABC-type uncharacterized transport system, auxiliary component compare
Psest_0141 -0.7 -2.2 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_3767 -0.7 -1.9 tyrosine recombinase XerC compare
Psest_3344 -0.7 -3.4 ABC-type Co2+ transport system, periplasmic component compare
Psest_1134 -0.7 -2.2 alkyl hydroperoxide reductase, F subunit compare


Specific Phenotypes

For 2 genes in this experiment

For stress Cobalt chloride hexahydrate in Pseudomonas stutzeri RCH2

For stress Cobalt chloride hexahydrate across organisms