Experiment set17IT037 for Sinorhizobium meliloti 1021

Compare to:

Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) carbon source

200 most important genes:

  gene name fitness t score description  
SMc02899 -8.1 -7.9 prephenate dehydratase compare
SMc01726 -7.7 -7.5 acetylglutamate kinase compare
SMc01054 -7.6 -5.2 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc04045 -7.5 -5.2 dihydroxy-acid dehydratase compare
SMc02569 -7.4 -5.1 imidazole glycerol phosphate synthase subunit HisF compare
SMc00917 -7.3 -5.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc04405 -7.3 -8.7 3-isopropylmalate dehydrogenase compare
SMc02572 -7.0 -5.4 imidazole glycerol phosphate synthase subunit HisH compare
SMc01843 -7.0 -11.6 5,10-methylenetetrahydrofolate reductase compare
SMc01801 -6.9 -4.5 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc02717 -6.9 -12.4 2-isopropylmalate synthase compare
SMc02137 -6.8 -4.7 ornithine carbamoyltransferase compare
SMc03797 -6.4 -13.1 homoserine O-succinyltransferase compare
SMc04028 -6.3 -16.4 glutamate synthase compare
SMc02123 -6.3 -4.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc00918 -6.3 -9.6 ATP phosphoribosyltransferase regulatory subunit compare
SMc01431 -6.3 -12.1 acetolactate synthase 3 catalytic subunit compare
SMc00640 -6.3 -9.6 phosphoserine aminotransferase compare
SMc04026 -6.2 -10.3 glutamate synthase compare
SMc03070 -6.2 -4.3 glucose-6-phosphate 1-dehydrogenase compare
SMc03823 -6.0 -12.6 isopropylmalate isomerase large subunit compare
SMc01494 -6.0 -11.7 phosphoserine phosphatase compare
SMc02245 -5.9 -4.1 dihydroorotate dehydrogenase 2 compare
SMc00131 -5.9 -14.7 transcriptional regulator compare
SMc00711 -5.8 -6.2 cyclohexadienyl dehydrogenase compare
SMc03112 -5.5 -15.9 B12-dependent methionine synthase compare
SMc02217 -5.4 -9.7 O-succinylhomoserine sulfhydrylase compare
SMc02124 -5.4 -14.3 nitrite reductase compare
SMc02574 -5.3 -8.2 imidazoleglycerol-phosphate dehydratase compare
SMc01004 -5.2 -9.7 phosphoribosyl-AMP cyclohydrolase compare
SMc03895 -5.2 -18.8 pyruvate carboxylase compare
SMc04088 -5.1 -10.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc02307 -5.1 -7.8 histidinol dehydrogenase compare
SMc00494 -4.9 -2.6 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc00092 -4.9 -10.2 phosphoadenosine phosphosulfate reductase compare
SMc02766 -4.9 -3.4 tryptophan synthase subunit beta compare
SMc00495 -4.9 -7.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc00580 -4.9 -4.7 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc02725 -4.8 -4.7 anthranilate synthase compare
SMc03777 -4.8 -10.6 gamma-glutamyl phosphate reductase compare
SMc00091 -4.7 -11.6 sulfate adenylyltransferase compare
SMc00090 -4.6 -8.6 sulfate adenylyltransferase compare
SMc02767 -4.6 -4.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMa1635 -4.5 -1.7 hypothetical protein compare
SMc00236 -4.5 -3.1 Indole-3-glycerol phosphate synthase compare
SMc02755 -4.4 -6.8 S-adenosyl-L-homocysteine hydrolase compare
SMc00993 -4.4 -12.9 phosphoribosylamine--glycine ligase compare
SMc00876 -4.3 -7.2 ATP-binding MRP protein compare
SMc02570 -4.2 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc03069 -4.1 -3.1 6-phosphogluconolactonase compare
SMc00017 -4.1 -2.1 homoserine kinase compare
SMc03979 -4.1 -3.0 glyceraldehyde-3-phosphate dehydrogenase compare
SMc00614 -4.1 -9.6 phosphoribosylglycinamide formyltransferase compare
SMc00554 -4.0 -12.3 amidophosphoribosyltransferase compare
SMc00488 -4.0 -15.6 phosphoribosylformylglycinamidine synthase II compare
SMc00412 -4.0 -2.8 orotidine 5'-phosphate decarboxylase compare
SMc00235 -4.0 -2.8 anthranilate phosphoribosyltransferase compare
SMc03068 -4.0 -14.8 phosphogluconate dehydratase compare
SMc03795 -3.9 -2.0 isopropylmalate isomerase small subunit compare
SMc01053 -3.9 -5.8 siroheme synthase compare
SMc00493 -3.8 -5.4 phosphoribosylformylglycinamidine synthase I compare
SMc01578 -3.8 -16.1 aspartate aminotransferase compare
SMc00815 -3.8 -2.4 inosine 5'-monophosphate dehydrogenase compare
SMc01770 -3.8 -1.6 serine hydroxymethyltransferase compare
SMc02138 -3.7 -4.6 acetylornithine transaminase compare
SMc04346 -3.7 -5.3 ketol-acid reductoisomerase compare
SMc04001 -3.6 -1.9 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc00615 -3.6 -7.7 phosphoribosylaminoimidazole synthetase compare
SMc00293 -3.5 -5.6 homoserine dehydrogenase compare
SMc01880 -3.5 -2.4 pantoate--beta-alanine ligase compare
SMc01881 -3.4 -4.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc02166 -3.2 -8.4 dihydroorotase compare
SMc04002 -3.1 -11.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SM_b21175 -3.1 -6.2 phosphate uptake ABC transporter permease compare
SMc02165 -3.1 -6.5 orotate phosphoribosyltransferase compare
SMc02246 -3.1 -1.1 hypothetical protein compare
SMc02765 -3.0 -7.7 tryptophan synthase subunit alpha compare
SMc03981 -3.0 -4.5 phosphoglycerate kinase compare
SM_b21176 -2.9 -5.6 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc03826 -2.9 -2.0 argininosuccinate synthase compare
SMc00405 -2.9 -8.8 hypothetical protein compare
SMc01852 -2.8 -7.8 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
SM_b21174 -2.8 -7.6 phosphate uptake ABC transporter permease compare
SMc02835 -2.7 -11.3 glucokinase compare
SMc03924 -2.7 -8.9 glycogen synthase compare
SMc00294 -2.7 -9.8 aminotransferase compare
SMc00302 -2.6 -2.9 hypothetical protein compare
SMc03776 -2.6 -4.1 gamma-glutamyl kinase compare
SMc01361 -2.5 -3.4 dihydroorotase compare
SMc01206 -2.5 -2.2 queuine tRNA-ribosyltransferase compare
SMc03978 -2.5 -1.7 transketolase compare
SMc01800 -2.5 -1.2 cytochrome C oxidase assembly transmembrane protein compare
SMc01028 -2.4 -15.2 phosphopyruvate hydratase compare
SMc01360 -2.4 -2.5 aspartate carbamoyltransferase catalytic subunit compare
SMc01207 -2.2 -2.3 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc00641 -2.2 -3.5 D-3-phosphoglycerate dehydrogenase compare
SMc01124 -2.1 -5.9 PII uridylyl-transferase compare
SM_b21177 -2.0 -6.9 phosphate uptake ABC transporter ATP-binding protein compare
SMc02707 -2.0 -4.9 hypothetical protein compare
SMc02850 -1.9 -4.0 DNA polymerase I compare
SMc02055 -1.9 -1.7 phytoene synthase compare
SMc02753 -1.8 -1.6 PTS system transporter subunit IIA compare
SMc03153 -1.7 -2.3 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
SMc02640 -1.7 -4.4 UDP-glucuronic acid epimerase compare
SMc02052 -1.7 -1.5 hypothetical protein compare
SMc03763 -1.6 -1.9 cytosine-specific methyltransferase compare
SMc00647 -1.6 -2.6 ribosomal large subunit pseudouridine synthase compare
SMc01505 -1.5 -1.5 hypothetical protein compare
SMc00010 -1.5 -1.6 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc00726 -1.5 -0.7 thiol:disulfide interchange redox-active center transmembrane protein compare
SMc01430 -1.4 -3.4 acetolactate synthase 3 regulatory subunit compare
SMc02695 -1.4 -5.2 GTP-dependent nucleic acid-binding protein EngD compare
SMc01569 -1.4 -0.7 carbamoyl phosphate synthase small subunit compare
SMc02558 -1.4 -5.2 hypothetical protein compare
SMc04000 -1.3 -1.0 hypothetical protein compare
SMc00321 -1.3 -5.2 tRNA pseudouridine synthase B compare
SMc01472 -1.3 -1.1 50S ribosomal protein L11 methyltransferase compare
SMc01215 -1.3 -0.9 carbamoyl phosphate synthase large subunit compare
SMc02838 -1.3 -5.5 phosphoglyceromutase compare
SMa1053 -1.3 -1.5 hypothetical protein compare
SMc03849 -1.2 -0.7 heme exporter C (cytochrome C-type biogenesis protein) transmembrane compare
SM_b21132 -1.2 -3.3 sulfate ABC transporter permease compare
SMc02714 -1.2 -1.6 hypothetical protein compare
SMc03974 -1.2 -6.0 hypothetical protein compare
SMc00712 -1.2 -2.0 hypothetical protein compare
SMc02983 -1.2 -4.5 ornithine, DAP, or arginine decarboxylase compare
SMc03161 -1.2 -7.9 oxidoreductase compare
SMc04454 -1.2 -4.1 ABC transporter ATP-binding protein compare
SMc02112 -1.2 -3.8 hypothetical protein compare
SMc03229 -1.2 -0.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc00511 -1.1 -4.1 D-ribulose-5-phosphate 3-epimerase compare
SMc00800 -1.1 -1.3 hypothetical protein compare
SMc01119 -1.1 -2.1 hypothetical protein compare
SMc02058 -1.1 -2.5 YAJC protein compare
SM_b21633 -1.1 -1.4 enoyl-CoA hydratase compare
SMc00053 -1.0 -0.8 monovalent cation/H+ antiporter subunit C compare
SMc01850 -1.0 -2.5 hypothetical protein compare
SMc01622 -1.0 -3.6 oxidoreductase compare
SMc00187 -1.0 -1.9 ubiquinol-cytochrome C reductase iron-sulfur subunit protein compare
SMc00806 -1.0 -2.4 hypothetical protein compare
SMc02047 -1.0 -2.3 glycine cleavage system aminomethyltransferase T compare
SMc01826 -1.0 -1.7 ABC transporter permease compare
SMc00802 -1.0 -1.0 hypothetical protein compare
SMc04005 -0.9 -4.8 pyruvate kinase compare
SMc00320 -0.9 -3.3 ribosome-binding factor A compare
SMc02495 -0.9 -0.6 translaldolase compare
SM_b20105 -0.9 -1.1 transcriptional regulator compare
SMc01007 -0.9 -1.7 hypothetical protein compare
SM_b20758 -0.9 -2.1 ArsR family transcriptional regulator compare
SMc04243 -0.9 -5.1 high-affinity zinc uptake system membrane ABC transporter protein compare
SM_b20330 -0.9 -3.5 glucoside 3-dehydrogenase; active on raffinose or trehalose (thuB) (EC 1.1.99.13) (from data) compare
SMa0846 -0.9 -1.2 transposase, fragment compare
SMc02435 -0.9 -1.8 methyltransferase compare
SMc01929 -0.9 -1.9 hypothetical protein compare
SMc03746 -0.9 -1.4 hypothetical protein compare
SM_b20258 -0.9 -2.7 transcriptional regulator compare
SMc03127 -0.9 -1.2 ABC transporter permease compare
SMc00914 -0.9 -2.3 oxidoreductase compare
SMc00450 -0.9 -1.4 protoheme IX farnesyltransferase compare
SMc02812 -0.8 -2.1 hypothetical protein compare
SMc00329 -0.8 -2.9 iron response regulator protein compare
SMc01174 -0.8 -5.0 cysteine synthase A compare
SMc03158 -0.8 -1.8 ABC transporter permease compare
SMc02451 -0.8 -1.3 hypothetical protein compare
SMc01147 -0.8 -1.7 coproporphyrinogen III oxidase compare
SMc00709 -0.8 -1.7 hypothetical protein compare
SMc01041 -0.8 -2.7 NIFR3-like protein compare
SMa2219 -0.8 -3.5 decarboxylase compare
SMc00556 -0.8 -2.9 DNA repair protein RadA compare
SMc02234 -0.8 -1.5 hypothetical protein compare
SMc04245 -0.8 -5.5 high-affinity zinc uptake system ABC transporter protein compare
SMc04042 -0.8 -3.7 monophosphatase compare
SMc02049 -0.8 -6.6 glycine dehydrogenase compare
SM_b21343 -0.8 -2.5 sugar uptake ABC transporter permease compare
SMc03980 -0.8 -3.3 hypothetical protein compare
SMc03836 -0.8 -1.5 acyl-CoA thioesterase i protein compare
SM_b20114 -0.8 -1.4 hypothetical protein compare
SMc02050 -0.8 -1.3 trigger factor compare
SMc02510 -0.8 -0.6 ferric uptake regulation protein compare
SMa0758 -0.8 -1.4 hypothetical protein compare
SMa5033 -0.8 -0.9 hypothetical protein compare
SMc03162 -0.7 -3.8 3-ketoglucose dehydratase (from data) compare
SMc02361 -0.7 -2.3 cytochrome C-type biogenesis transmembrane protein compare
SMc00298 -0.7 -2.8 methionine aminopeptidase compare
SM_b20329 -0.7 -5.0 required for glucoside 3-dehydrogenase activity on raffinose or trehalose (thuA) (EC 1.1.99.13) (from data) compare
SMc02121 -0.7 -1.2 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, ATPase component (from data) compare
SMc00622 -0.7 -3.9 ribonuclease D protein compare
SM_b21133 -0.7 -5.2 sulfate ABC transporter substrate-binding protein compare
SMc03184 -0.7 -1.1 PH adaptation potassium efflux system G transmembrane protein compare
SMa1018 -0.7 -3.1 hypothetical protein compare
SMc00451 -0.7 -4.6 processing protease compare
SMa2215 -0.7 -1.7 GntR family transcriptional regulator compare
SMc01877 -0.7 -3.4 DNA repair protein compare
SMc04456 -0.7 -2.6 chaperone protein compare
SMc00760 -0.7 -2.3 recombinase A compare
SMc01440 -0.7 -2.6 hydrolase serine protease transmembrane protein compare
SMa0286 -0.7 -1.2 hypothetical protein compare
SMc00378 -0.7 -1.6 exodeoxyribonuclease VII large subunit compare
SMc02048 -0.7 -3.9 glycine cleavage system protein H compare
SMc00349 -0.7 -3.5 GTP-binding protein LepA compare


Specific Phenotypes

None in this experiment

For Sinorhizobium meliloti 1021 in carbon source experiments

For carbon source Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) across organisms