Experiment set17IT037 for Bacteroides thetaiotaomicron VPI-5482

PEG (Day 1 ) - Cage1;Mouse5

Group: mouse_peg_treatment
Media: + Polyethylene glycol (15 vol%)
Culturing: Btheta_ML6a
By: Deanna Pepin on 2/1/21

Specific Phenotypes

For 12 genes in this experiment

For mouse_peg_treatment Polyethylene glycol in Bacteroides thetaiotaomicron VPI-5482

For mouse_peg_treatment Polyethylene glycol across organisms

SEED Subsystems

Subsystem	#Specific
Cysteine Biosynthesis	1
D-Galacturonate and D-Glucuronate Utilization	1
Methionine Biosynthesis	1
Propionate-CoA to Succinate Module	1
Restriction-Modification System	1
Serine-glyoxylate cycle	1
TCA Cycle	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Citrate cycle (TCA cycle)
• Pentose and glucuronate interconversions
• Cysteine metabolism
• Selenoamino acid metabolism
• Starch and sucrose metabolism
• Glyoxylate and dicarboxylate metabolism
• Reductive carboxylate cycle (CO2 fixation)
• Sulfur metabolism
• Biosynthesis of phenylpropanoids
• Biosynthesis of terpenoids and steroids
• Biosynthesis of alkaloids derived from shikimate pathway
• Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
• Biosynthesis of alkaloids derived from histidine and purine
• Biosynthesis of alkaloids derived from terpenoid and polyketide
• Biosynthesis of plant hormones

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-cysteine biosynthesis I	2	2	1
glyoxylate cycle	6	4	2
nitrogen remobilization from senescing leaves	8	5	2
partial TCA cycle (obligate autotrophs)	8	5	2
TCA cycle V (2-oxoglutarate synthase)	9	8	2
TCA cycle VI (Helicobacter)	9	6	2
TCA cycle IV (2-oxoglutarate decarboxylase)	9	6	2
TCA cycle II (plants and fungi)	9	6	2
TCA cycle VII (acetate-producers)	9	6	2
TCA cycle III (animals)	10	7	2
TCA cycle I (prokaryotic)	10	7	2
heparin degradation	5	3	1
seleno-amino acid biosynthesis (plants)	5	2	1
reductive TCA cycle I	11	9	2
reductive TCA cycle II	12	8	2
superpathway of glyoxylate bypass and TCA	12	7	2
superpathway of glyoxylate cycle and fatty acid degradation	14	6	2
mixed acid fermentation	16	12	2
superpathway of sulfate assimilation and cysteine biosynthesis	9	7	1
methylaspartate cycle	19	11	2
superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle	22	17	2
ethene biosynthesis V (engineered)	25	15	2
superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass	26	18	2
superpathway of seleno-compound metabolism	19	5	1