Experiment set17IT036 for Pseudomonas stutzeri RCH2

Compare to:

LB with Cobalt chloride hexahydrate 0.05 mM

200 most important genes:

  gene name fitness t score description  
Psest_1496 -4.1 -1.9 Holliday junction DNA helicase, RuvA subunit compare
Psest_1809 -4.1 -14.3 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_3546 -3.7 -1.4 Phosphatidylglycerophosphatase A and related proteins compare
Psest_1814 -3.4 -20.3 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3565 -3.3 -2.3 hypothetical protein compare
Psest_3938 -3.1 -5.0 Uncharacterized protein conserved in bacteria compare
Psest_0309 -3.1 -1.7 RND family efflux transporter, MFP subunit compare
Psest_3531 -2.9 -2.1 Peptidase propeptide and YPEB domain. compare
Psest_0133 -2.8 -1.8 type VI secretion protein, VC_A0107 family compare
Psest_3926 -2.6 -14.2 GTP-binding protein TypA/BipA compare
Psest_1631 -2.5 -1.9 Uncharacterized conserved small protein compare
Psest_0697 -2.4 -4.3 ribosomal protein L9 compare
Psest_2123 -2.3 -2.6 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_4051 -2.2 -4.2 molybdenum-pterin binding domain compare
Psest_2923 -2.1 -2.0 hypothetical protein compare
Psest_1986 -2.1 -1.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_1159 -1.9 -5.8 Uncharacterized iron-regulated protein conserved
Psest_3367 -1.9 -1.5 translation initation factor SUI1, putative, prokaryotic compare
Psest_4142 -1.9 -1.4 hypothetical protein compare
Psest_0357 -1.8 -2.3 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1510 -1.8 -3.1 Putative Zn-dependent protease, contains TPR repeats compare
Psest_1157 -1.7 -4.6 Predicted periplasmic lipoprotein conserved
Psest_1158 -1.7 -8.2 Predicted thiol oxidoreductase compare
Psest_3937 -1.7 -1.7 ATP-dependent protease HslVU, ATPase subunit compare
Psest_2726 -1.7 -1.3 Rhodanese-related sulfurtransferase compare
Psest_1505 -1.7 -2.5 Organic radical activating enzymes compare
Psest_0692 -1.7 -3.2 rRNA methylase, putative, group 3 compare
Psest_3780 -1.7 -2.9 Transcriptional regulator compare
Psest_2850 -1.6 -1.4 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_0725 -1.6 -1.5 Negative regulator of beta-lactamase expression compare
Psest_3766 -1.6 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_1679 -1.5 -1.9 ribonuclease, Rne/Rng family compare
Psest_0822 -1.5 -3.5 Transcriptional regulators compare
Psest_1999 -1.5 -1.1 pseudouridine synthase compare
Psest_0575 -1.5 -1.0 HrpA-like helicases compare
Psest_0678 -1.4 -2.8 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_2945 -1.4 -1.2 septum site-determining protein MinC compare
Psest_2764 -1.4 -1.1 hypothetical protein compare
Psest_4078 -1.4 -2.1 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_2648 -1.4 -2.1 hypothetical protein compare
Psest_3100 -1.4 -1.3 RNA polymerase sigma factor RpoE compare
Psest_1156 -1.4 -5.3 outer membrane component of uptake system, probably for ferrous iron (from data) conserved
Psest_0193 -1.4 -1.3 conserved hypothetical protein compare
Psest_4098 -1.4 -2.8 Superfamily I DNA and RNA helicases compare
Psest_1520 -1.3 -3.5 hypothetical protein compare
Psest_0028 -1.3 -2.9 Coproporphyrinogen III oxidase compare
Psest_2645 -1.3 -5.4 Transcriptional regulator compare
Psest_1056 -1.3 -2.0 2-isopropylmalate synthase, bacterial type compare
Psest_1782 -1.3 -1.7 Predicted transcriptional regulators compare
Psest_4044 -1.3 -2.4 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0644 -1.3 -3.2 siderophore ferric iron reductase, AHA_1954 family compare
Psest_0708 -1.3 -1.4 outer membrane assembly lipoprotein YfiO compare
Psest_1873 -1.2 -3.3 Predicted permease, DMT superfamily compare
Psest_1012 -1.2 -3.6 Signal transduction histidine kinase compare
Psest_2584 -1.2 -4.3 Phosphoribosylanthranilate isomerase compare
Psest_3456 -1.2 -1.3 RNA polymerase sigma factor, sigma-70 family compare
Psest_3128 -1.2 -2.9 Protein-disulfide isomerase compare
Psest_3050 -1.2 -1.8 tRNA_Gly_CCC compare
Psest_1089 -1.2 -2.2 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_0398 -1.2 -4.6 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_3762 -1.1 -2.8 iron donor protein CyaY compare
Psest_0119 -1.1 -1.6 hypothetical protein compare
Psest_1518 -1.1 -2.2 tRNA_Ser_CGA compare
Psest_1417 -1.1 -0.7 hypothetical protein compare
Psest_1813 -1.1 -5.6 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3338 -1.1 -1.0 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2018 -1.1 -2.0 Uncharacterized conserved protein compare
Psest_0442 -1.1 -2.5 ATPases of the AAA+ class compare
Psest_3129 -1.1 -0.9 tyrosine recombinase XerD compare
Psest_2520 -1.1 -1.4 Predicted SAM-dependent methyltransferase compare
Psest_2243 -1.1 -0.9 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_3322 -1.1 -7.9 TIGR02099 family protein compare
Psest_0515 -1.1 -3.1 rare lipoprotein A compare
Psest_4128 -1.1 -1.3 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1185 -1.1 -2.6 heavy metal response regulator compare
Psest_2238 -1.1 -2.4 hypothetical protein compare
Psest_2613 -1.1 -1.2 hypothetical protein compare
Psest_0852 -1.1 -4.0 glucose-6-phosphate 1-dehydrogenase compare
Psest_0487 -1.1 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_0393 -1.0 -5.6 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3962 -1.0 -1.3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_0281 -1.0 -4.6 Dynamin family. compare
Psest_4335 -1.0 -1.7 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_0417 -1.0 -2.0 Acyl-CoA dehydrogenases compare
Psest_2122 -1.0 -0.9 Parvulin-like peptidyl-prolyl isomerase compare
Psest_0691 -1.0 -6.1 ribonuclease R compare
Psest_4343 -1.0 -2.1 Protein of unknown function (DUF3301). compare
Psest_3123 -1.0 -1.4 dihydroorotase, homodimeric type compare
Psest_1860 -1.0 -1.6 Uncharacterized conserved protein compare
Psest_1484 -1.0 -5.8 Thiol-disulfide isomerase and thioredoxins compare
Psest_0165 -1.0 -2.1 protein-export chaperone SecB compare
Psest_3816 -1.0 -0.9 DNA-directed RNA polymerase, omega subunit compare
Psest_2216 -1.0 -3.8 Acyl carrier protein compare
Psest_3478 -1.0 -1.0 Cytochrome B561 compare
Psest_0334 -1.0 -1.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0542 -1.0 -4.8 AMP nucleosidase compare
Psest_3005 -1.0 -1.7 Fructose-2,6-bisphosphatase compare
Psest_0277 -1.0 -1.0 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_0740 -1.0 -1.8 Transcriptional regulator compare
Psest_0060 -1.0 -1.9 Predicted Fe-S protein compare
Psest_1879 -1.0 -1.8 Trk-type K+ transport systems, membrane components compare
Psest_4338 -1.0 -2.6 Fe2+-dicitrate sensor, membrane component compare
Psest_0212 -1.0 -1.9 exodeoxyribonuclease V, gamma subunit compare
Psest_0498 -1.0 -1.0 ribosome small subunit-dependent GTPase A compare
Psest_3342 -1.0 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_3659 -0.9 -2.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1613 -0.9 -2.7 hypothetical protein compare
Psest_2918 -0.9 -3.0 amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) compare
Psest_1111 -0.9 -1.6 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_1724 -0.9 -2.1 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2872 -0.9 -1.5 protein RecA compare
Psest_0260 -0.9 -0.7 Cell division protein compare
Psest_4049 -0.9 -1.0 hypothetical protein compare
Psest_3070 -0.9 -1.8 3-oxoadipyl-CoA thiolase compare
Psest_3458 -0.9 -2.7 hypothetical protein compare
Psest_1659 -0.9 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3188 -0.9 -2.1 hypothetical protein compare
Psest_0508 -0.9 -3.4 gamma-glutamyl phosphate reductase compare
Psest_0297 -0.9 -2.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0820 -0.9 -2.9 hypothetical protein compare
Psest_1704 -0.9 -0.8 Dehydrogenases (flavoproteins) compare
Psest_2759 -0.9 -3.9 Co/Zn/Cd efflux system component conserved
Psest_1871 -0.9 -3.7 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_3827 -0.9 -3.8 Transcriptional regulator compare
Psest_2016 -0.9 -3.3 hypothetical protein compare
Psest_3344 -0.9 -4.1 ABC-type Co2+ transport system, periplasmic component compare
Psest_2285 -0.9 -2.0 ATP-dependent protease La compare
Psest_3172 -0.9 -2.4 cation diffusion facilitator family transporter conserved
Psest_1058 -0.9 -1.3 ribosomal-protein-alanine acetyltransferase compare
Psest_1315 -0.9 -1.2 hypothetical protein compare
Psest_0533 -0.9 -2.1 Sel1 repeat. compare
Psest_2887 -0.8 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_0078 -0.8 -0.7 hypothetical protein compare
Psest_1288 -0.8 -3.7 Putative multicopper oxidases compare
Psest_2425 -0.8 -2.1 Trk-type K+ transport systems, membrane components compare
Psest_0466 -0.8 -2.2 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1018 -0.8 -2.9 ribosomal protein L11 methyltransferase compare
Psest_2581 -0.8 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_0087 -0.8 -2.0 hypothetical protein compare
Psest_3991 -0.8 -1.1 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_1614 -0.8 -3.5 ABC-type uncharacterized transport system involved in gliding motility, auxiliary component compare
Psest_0006 -0.8 -2.8 alkyl hydroperoxide reductase, F subunit compare
Psest_1774 -0.8 -1.5 Glutathione peroxidase compare
Psest_2946 -0.8 -1.8 septum site-determining protein MinD compare
Psest_1026 -0.8 -1.4 Uncharacterized iron-regulated protein compare
Psest_3979 -0.8 -1.2 Fructose-2,6-bisphosphatase compare
Psest_1535 -0.8 -1.9 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
Psest_3323 -0.8 -2.2 ribonuclease, Rne/Rng family compare
Psest_1947 -0.8 -0.5 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0149 -0.8 -3.0 nitrate ABC transporter, permease protein compare
Psest_3936 -0.8 -2.0 ATP-dependent protease HslVU, peptidase subunit compare
Psest_0355 -0.8 -1.3 Glycine cleavage system regulatory protein compare
Psest_3651 -0.8 -2.3 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2899 -0.8 -0.7 hypothetical protein compare
Psest_1884 -0.8 -0.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2035 -0.8 -2.4 crcB protein compare
Psest_2229 -0.8 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_1975 -0.8 -3.9 Predicted transcriptional regulators compare
Psest_1374 -0.8 -3.1 Arabinose efflux permease compare
Psest_1772 -0.8 -2.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1920 -0.8 -0.7 Uncharacterized protein conserved in bacteria compare
Psest_1882 -0.8 -2.5 Signal transduction histidine kinase compare
Psest_3389 -0.8 -1.7 hypothetical protein compare
Psest_3518 -0.8 -0.6 Transcriptional regulators compare
Psest_2773 -0.8 -3.3 glycerol kinase compare
Psest_3110 -0.7 -3.2 Enoyl-CoA hydratase/carnithine racemase compare
Psest_2634 -0.7 -3.2 glycine betaine aldehyde dehydrogenase compare
Psest_4177 -0.7 -0.9 flagellar biosynthetic protein FliP compare
Psest_3803 -0.7 -0.8 DNA repair protein radc compare
Psest_2104 -0.7 -0.7 IscR-regulated protein YhgI compare
Psest_2091 -0.7 -2.0 Molecular chaperone (small heat shock protein) compare
Psest_2791 -0.7 -1.6 hypothetical protein compare
Psest_0516 -0.7 -3.5 D-alanyl-D-alanine carboxypeptidase compare
Psest_3391 -0.7 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_0592 -0.7 -1.4 hypothetical protein compare
Psest_0662 -0.7 -1.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1183 -0.7 -1.9 hydroxyisourate hydrolase compare
Psest_3575 -0.7 -2.7 Arabinose efflux permease compare
Psest_0737 -0.7 -0.5 Cu(I)-responsive transcriptional regulator compare
Psest_0296 -0.7 -3.3 glutathione synthetase, prokaryotic compare
Psest_3697 -0.7 -1.5 Outer membrane lipoprotein carrier protein LolA. compare
Psest_0652 -0.7 -1.6 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_4010 -0.7 -0.8 peroxiredoxin, OsmC subfamily compare
Psest_1283 -0.7 -2.0 Membrane proteins related to metalloendopeptidases compare
Psest_1486 -0.7 -1.6 hypothetical protein compare
Psest_2957 -0.7 -2.5 competence protein ComEA helix-hairpin-helix repeat region compare
Psest_0902 -0.7 -2.7 Predicted transcriptional regulators compare
Psest_1488 -0.7 -5.3 outer membrane porin, OprD family. compare
Psest_4396 -0.7 -3.0 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_3014 -0.7 -1.2 cob(I)alamin adenosyltransferase compare
Psest_0485 -0.7 -1.7 clan AA aspartic protease, TIGR02281 family compare
Psest_1699 -0.7 -2.1 Selenocysteine lyase compare
Psest_2101 -0.7 -1.0 hypothetical protein compare
Psest_3535 -0.7 -1.8 hypothetical protein compare
Psest_2662 -0.7 -3.7 hypothetical protein compare
Psest_0031 -0.7 -1.0 Uncharacterized conserved protein compare
Psest_4309 -0.7 -2.1 ABC-type Mn/Zn transport systems, ATPase component compare
Psest_2789 -0.7 -2.5 Ammonia permease compare
Psest_3355 -0.7 -2.0 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
Psest_0869 -0.7 -1.5 Acetyltransferase (isoleucine patch superfamily) compare


Specific Phenotypes

For 2 genes in this experiment

For stress Cobalt chloride hexahydrate in Pseudomonas stutzeri RCH2

For stress Cobalt chloride hexahydrate across organisms