Experiment set17IT035 for Pseudomonas stutzeri RCH2

Compare to:

LB with Nickel (II) chloride hexahydrate 1 mM

200 most important genes:

  gene name fitness t score description  
Psest_0845 -4.7 -1.2 hypothetical protein compare
Psest_2011 -3.5 -11.7 Predicted permease compare
Psest_0397 -3.4 -14.9 Small-conductance mechanosensitive channel compare
Psest_0846 -2.9 -4.1 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_2088 -2.9 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_0844 -2.9 -6.2 High-affinity Fe2+/Pb2+ permease compare
Psest_3351 -2.9 -5.1 peptide chain release factor 3 compare
Psest_0678 -2.8 -3.7 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_2759 -2.7 -8.2 Co/Zn/Cd efflux system component compare
Psest_2018 -2.7 -4.0 Uncharacterized conserved protein compare
Psest_2872 -2.7 -2.7 protein RecA compare
Psest_3039 -2.6 -1.9 periplasmic nitrate reductase, NapE protein compare
Psest_2810 -2.6 -6.0 5'/3'-nucleotidase SurE compare
Psest_2988 -2.6 -7.3 aspartate kinase, monofunctional class compare
Psest_0843 -2.5 -11.5 hypothetical protein compare
Psest_3565 -2.4 -1.8 hypothetical protein compare
Psest_0398 -2.4 -7.7 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_0133 -2.4 -1.7 type VI secretion protein, VC_A0107 family compare
Psest_0697 -2.4 -3.6 ribosomal protein L9 compare
Psest_2775 -2.3 -3.1 Glycerol-3-phosphate dehydrogenase compare
Psest_1510 -2.2 -2.9 Putative Zn-dependent protease, contains TPR repeats compare
Psest_4103 -2.1 -1.7 AraC-type DNA-binding domain-containing proteins compare
Psest_1463 -2.1 -1.2 SufE protein probably involved in Fe-S center assembly compare
Psest_2778 -2.1 -3.2 Parvulin-like peptidyl-prolyl isomerase compare
Psest_2946 -2.1 -2.8 septum site-determining protein MinD compare
Psest_2557 -1.9 -2.8 Protein of unknown function (DUF2474). compare
Psest_3128 -1.9 -4.5 Protein-disulfide isomerase compare
Psest_2304 -1.9 -1.2 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0498 -1.9 -1.7 ribosome small subunit-dependent GTPase A compare
Psest_0175 -1.9 -6.4 Xaa-Pro aminopeptidase compare
Psest_1679 -1.8 -1.7 ribonuclease, Rne/Rng family compare
Psest_3546 -1.8 -0.9 Phosphatidylglycerophosphatase A and related proteins compare
Psest_1804 -1.7 -2.0 Superfamily II DNA and RNA helicases compare
Psest_1354 -1.7 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_3962 -1.7 -1.5 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_0442 -1.7 -2.3 ATPases of the AAA+ class compare
Psest_1870 -1.7 -1.3 Transcriptional regulators compare
Psest_2768 -1.7 -2.2 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_4010 -1.7 -1.2 peroxiredoxin, OsmC subfamily compare
Psest_0691 -1.6 -9.2 ribonuclease R compare
Psest_1879 -1.6 -3.0 Trk-type K+ transport systems, membrane components compare
Psest_2645 -1.6 -6.1 Transcriptional regulator compare
Psest_2001 -1.6 -1.1 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_4183 -1.6 -1.9 PilZ domain. compare
Psest_2585 -1.5 -0.8 pseudouridylate synthase I compare
Psest_0542 -1.5 -6.5 AMP nucleosidase compare
Psest_2646 -1.5 -1.8 SOS regulatory protein LexA compare
Psest_0417 -1.5 -2.0 Acyl-CoA dehydrogenases compare
Psest_4095 -1.5 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_4128 -1.4 -1.7 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3045 -1.4 -2.0 Cold shock proteins compare
Psest_0601 -1.4 -1.6 hypothetical protein compare
Psest_4044 -1.4 -1.3 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1884 -1.4 -1.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1643 -1.4 -0.9 hypothetical protein compare
Psest_0165 -1.4 -3.1 protein-export chaperone SecB compare
Psest_1837 -1.4 -5.2 Endoglucanase compare
Psest_2243 -1.4 -1.0 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1292 -1.3 -5.9 monothiol glutaredoxin, Grx4 family compare
Psest_2538 -1.3 -1.3 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_4163 -1.3 -2.5 hypothetical protein compare
Psest_2104 -1.3 -0.9 IscR-regulated protein YhgI compare
Psest_2090 -1.3 -2.6 Protein of unknown function (DUF2970). compare
Psest_1873 -1.3 -3.1 Predicted permease, DMT superfamily compare
Psest_3047 -1.3 -0.9 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_1055 -1.3 -6.8 Saccharopine dehydrogenase and related proteins compare
Psest_0725 -1.2 -1.5 Negative regulator of beta-lactamase expression compare
Psest_3973 -1.2 -1.1 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_1049 -1.2 -4.0 Uncharacterized paraquat-inducible protein A compare
Psest_2240 -1.2 -1.4 hypothetical protein compare
Psest_1065 -1.2 -2.0 hypothetical protein compare
Psest_1772 -1.2 -2.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0533 -1.2 -3.5 Sel1 repeat. compare
Psest_3480 -1.2 -1.6 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_3659 -1.2 -2.9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1235 -1.2 -4.2 Leucyl aminopeptidase compare
Psest_0508 -1.2 -4.3 gamma-glutamyl phosphate reductase compare
Psest_3212 -1.2 -2.4 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1809 -1.1 -6.2 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1082 -1.1 -1.5 Enoyl-CoA hydratase/carnithine racemase compare
Psest_1313 -1.1 -1.6 Uncharacterized conserved small protein compare
Psest_3697 -1.1 -1.6 Outer membrane lipoprotein carrier protein LolA. compare
Psest_1230 -1.1 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_4219 -1.1 -1.6 DNA polymerase I compare
Psest_2764 -1.1 -1.1 hypothetical protein compare
Psest_3478 -1.1 -1.3 Cytochrome B561 compare
Psest_1922 -1.1 -5.9 aminopeptidase N, Escherichia coli type compare
Psest_4303 -1.1 -1.6 HEAT repeat. compare
Psest_3754 -1.1 -2.5 Uncharacterized protein involved in response to NO compare
Psest_3306 -1.1 -3.6 conserved hypothetical integral membrane protein compare
Psest_2901 -1.1 -1.3 hypothetical protein compare
Psest_0181 -1.1 -3.9 glycine cleavage system T protein compare
Psest_0537 -1.0 -1.7 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_3721 -1.0 -4.2 Malic enzyme compare
Psest_0872 -1.0 -0.9 Helix-turn-helix. compare
Psest_0207 -1.0 -2.3 hypothetical protein compare
Psest_0212 -1.0 -1.3 exodeoxyribonuclease V, gamma subunit compare
Psest_1302 -1.0 -2.5 Predicted thioesterase compare
Psest_3100 -1.0 -1.5 RNA polymerase sigma factor RpoE compare
Psest_1993 -1.0 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_3013 -1.0 -2.0 cobyrinic acid a,c-diamide synthase compare
Psest_3936 -1.0 -2.3 ATP-dependent protease HslVU, peptidase subunit compare
Psest_2613 -1.0 -1.1 hypothetical protein compare
Psest_2130 -1.0 -2.3 exodeoxyribonuclease III compare
Psest_3014 -1.0 -1.2 cob(I)alamin adenosyltransferase compare
Psest_0066 -1.0 -1.2 Protein of unknown function (DUF3060). compare
Psest_2801 -1.0 -2.3 hypothetical protein compare
Psest_3092 -1.0 -1.2 ribonuclease III, bacterial compare
Psest_0141 -1.0 -2.7 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_1166 -1.0 -1.5 transcriptional regulator, ArgP family compare
Psest_3645 -1.0 -4.6 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0086 -1.0 -1.5 hypothetical protein compare
Psest_2786 -1.0 -0.8 Domain of unknown function (DUF3597). compare
Psest_4191 -1.0 -2.1 Transcriptional regulator compare
Psest_2719 -1.0 -1.1 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_3908 -0.9 -1.0 Cytochrome c553 compare
Psest_0999 -0.9 -1.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2726 -0.9 -0.7 Rhodanese-related sulfurtransferase compare
Psest_0521 -0.9 -4.7 lytic murein transglycosylase compare
Psest_0334 -0.9 -1.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1704 -0.9 -0.9 Dehydrogenases (flavoproteins) compare
Psest_4363 -0.9 -3.9 ATPases involved in chromosome partitioning compare
Psest_3033 -0.9 -5.0 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control compare
Psest_0028 -0.9 -2.6 Coproporphyrinogen III oxidase compare
Psest_0115 -0.9 -0.9 Predicted integral membrane protein compare
Psest_0147 -0.9 -3.3 Acetyltransferase, GNAT family. compare
Psest_1417 -0.9 -0.8 hypothetical protein compare
Psest_2046 -0.9 -1.7 hypothetical protein compare
Psest_2894 -0.9 -2.0 addiction module antidote protein, HigA family compare
Psest_3803 -0.9 -1.0 DNA repair protein radc compare
Psest_3070 -0.9 -1.3 3-oxoadipyl-CoA thiolase compare
Psest_1738 -0.9 -3.1 flagellar biosynthetic protein FlhF compare
Psest_1115 -0.9 -1.3 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_1366 -0.9 -1.1 hypothetical protein compare
Psest_2523 -0.8 -3.1 Predicted hydrolase of the alpha/beta-hydrolase fold compare
Psest_2333 -0.8 -0.7 Protein of unknown function (DUF3359). compare
Psest_1691 -0.8 -1.8 aminodeoxychorismate lyase compare
Psest_3384 -0.8 -4.3 glutamate 5-kinase compare
Psest_3937 -0.8 -1.0 ATP-dependent protease HslVU, ATPase subunit compare
Psest_2729 -0.8 -3.4 Signal transduction histidine kinase compare
Psest_1464 -0.8 -4.7 Selenocysteine lyase compare
Psest_3871 -0.8 -2.0 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) compare
Psest_2158 -0.8 -5.8 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_3479 -0.8 -2.6 molybdenum cofactor synthesis domain compare
Psest_1994 -0.8 -1.6 Amidases related to nicotinamidase compare
Psest_3064 -0.8 -1.7 hypothetical protein compare
Psest_3456 -0.8 -1.1 RNA polymerase sigma factor, sigma-70 family compare
Psest_1551 -0.8 -1.6 Integral membrane protein, interacts with FtsH compare
Psest_0857 -0.8 -1.2 Membrane transporters of cations and cationic drugs compare
Psest_2594 -0.8 -2.3 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4221 -0.8 -3.0 homoserine kinase, Neisseria type compare
Psest_0134 -0.8 -3.0 type VI secretion-associated protein, VC_A0119 family compare
Psest_1054 -0.8 -3.2 Diaminopimelate decarboxylase compare
Psest_1990 -0.8 -1.4 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Psest_3338 -0.8 -0.8 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2097 -0.8 -3.0 EamA-like transporter family. compare
Psest_4328 -0.8 -2.8 Cytochrome oxidase assembly factor compare
Psest_0299 -0.8 -2.3 Chemotaxis signal transduction protein compare
Psest_3780 -0.8 -2.0 Transcriptional regulator compare
Psest_3818 -0.8 -2.6 endoribonuclease L-PSP, putative compare
Psest_0506 -0.8 -2.3 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Psest_2796 -0.8 -1.9 HNH endonuclease. compare
Psest_2975 -0.8 -0.9 tRNA_Arg_CCT compare
Psest_3419 -0.7 -3.3 Predicted transcriptional regulators compare
Psest_0526 -0.7 -1.4 hypothetical protein compare
Psest_1774 -0.7 -1.1 Glutathione peroxidase compare
Psest_2862 -0.7 -3.1 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_3213 -0.7 -2.9 acetate kinase compare
Psest_4135 -0.7 -2.1 Ketosteroid isomerase homolog compare
Psest_0292 -0.7 -1.4 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_0060 -0.7 -1.4 Predicted Fe-S protein compare
Psest_1878 -0.7 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_3762 -0.7 -1.7 iron donor protein CyaY compare
Psest_2850 -0.7 -0.7 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_3768 -0.7 -2.3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_4056 -0.7 -1.8 FMN reductase, SsuE family compare
Psest_0833 -0.7 -2.1 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains compare
Psest_0389 -0.7 -1.9 hypothetical protein compare
Psest_4021 -0.7 -1.5 hypothetical protein compare
Psest_2809 -0.7 -1.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1815 -0.7 -4.3 pseudaminic acid synthase compare
Psest_1535 -0.7 -1.3 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
Psest_1910 -0.7 -1.2 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase compare
Psest_1960 -0.7 -1.0 Bacterial protein of unknown function (DUF903). compare
Psest_3375 -0.7 -3.5 prepilin-type N-terminal cleavage/methylation domain compare
Psest_1012 -0.7 -1.6 Signal transduction histidine kinase compare
Psest_1543 -0.7 -2.9 Predicted transcription regulator, contains HTH domain (MarR family) compare
Psest_4310 -0.7 -0.9 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_2725 -0.7 -1.1 hypothetical protein compare
Psest_1306 -0.7 -0.8 hypothetical protein compare
Psest_0510 -0.7 -1.9 iojap-like ribosome-associated protein compare
Psest_3784 -0.7 -0.9 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_3470 -0.7 -2.6 Uncharacterized conserved protein compare
Psest_2949 -0.7 -2.4 Aspartyl aminopeptidase compare
Psest_0832 -0.7 -3.5 iron-sulfur cluster repair di-iron protein compare
Psest_3823 -0.7 -2.5 hypothetical protein compare
Psest_1398 -0.7 -1.6 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_2561 -0.7 -0.5 hypothetical protein compare
Psest_0602 -0.7 -3.7 hypothetical protein compare
Psest_3339 -0.7 -1.6 Signal transduction histidine kinase compare


Specific Phenotypes

For 5 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Pseudomonas stutzeri RCH2

For stress Nickel (II) chloride hexahydrate across organisms