Experiment set17IT035 for Sinorhizobium meliloti 1021

Compare to:

methyl-beta-D-xylopyranoside carbon source

200 most important genes:

  gene name fitness t score description  
SMc00495 -7.8 -5.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc01054 -7.5 -5.2 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc01726 -7.3 -7.1 acetylglutamate kinase compare
SMc02899 -7.2 -9.9 prephenate dehydratase compare
SMc00917 -7.1 -4.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc02569 -6.9 -4.8 imidazole glycerol phosphate synthase subunit HisF compare
SMc02717 -6.9 -9.4 2-isopropylmalate synthase compare
SMc00711 -6.9 -4.7 cyclohexadienyl dehydrogenase compare
SMc04405 -6.9 -8.2 3-isopropylmalate dehydrogenase compare
SMc02123 -6.9 -4.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc01801 -6.8 -4.7 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc03823 -6.7 -10.2 isopropylmalate isomerase large subunit compare
SMc03797 -6.6 -10.9 homoserine O-succinyltransferase compare
SMc00993 -6.5 -7.7 phosphoribosylamine--glycine ligase compare
SMc02137 -6.5 -4.5 ornithine carbamoyltransferase compare
SMc01494 -6.3 -10.0 phosphoserine phosphatase compare
SMc01843 -6.3 -12.8 5,10-methylenetetrahydrofolate reductase compare
SMc01431 -6.3 -9.6 acetolactate synthase 3 catalytic subunit compare
SMc04028 -6.3 -14.6 glutamate synthase compare
SMc04045 -6.2 -8.5 dihydroxy-acid dehydratase compare
SMc01004 -6.2 -10.1 phosphoribosyl-AMP cyclohydrolase compare
SMc00918 -6.2 -9.4 ATP phosphoribosyltransferase regulatory subunit compare
SMc04026 -6.1 -9.4 glutamate synthase compare
SMc00615 -6.1 -10.6 phosphoribosylaminoimidazole synthetase compare
SMc00493 -6.1 -5.9 phosphoribosylformylglycinamidine synthase I compare
SMc02217 -6.0 -5.9 O-succinylhomoserine sulfhydrylase compare
SMc02572 -5.9 -4.4 imidazole glycerol phosphate synthase subunit HisH compare
SMc00131 -5.8 -15.1 transcriptional regulator compare
SMc00614 -5.8 -8.8 phosphoribosylglycinamide formyltransferase compare
SMc03070 -5.7 -5.6 glucose-6-phosphate 1-dehydrogenase compare
SMc03112 -5.7 -15.5 B12-dependent methionine synthase compare
SMc03895 -5.7 -15.9 pyruvate carboxylase compare
SMc00488 -5.6 -17.7 phosphoribosylformylglycinamidine synthase II compare
SMc00092 -5.5 -13.4 phosphoadenosine phosphosulfate reductase compare
SMc00640 -5.5 -9.8 phosphoserine aminotransferase compare
SMc02425 -5.4 -3.7 transcriptional regulator compare
SMc00554 -5.3 -8.8 amidophosphoribosyltransferase compare
SMc02570 -5.2 -6.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc00293 -5.1 -14.9 homoserine dehydrogenase compare
SMc00090 -5.0 -10.7 sulfate adenylyltransferase compare
SMc00091 -5.0 -10.7 sulfate adenylyltransferase compare
SMc03776 -4.9 -3.4 gamma-glutamyl kinase compare
SMc04001 -4.9 -2.1 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc03164 -4.9 -12.0 Xylulose kinase (EC 2.7.1.17) (from data) conserved
SMc02469 -4.9 -9.7 oxidoreductase conserved
SMc02124 -4.8 -15.4 nitrite reductase compare
SMc04088 -4.8 -9.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc00494 -4.8 -2.8 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc04002 -4.7 -5.2 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc02470 -4.7 -7.3 transcriptional regulator conserved
SMc03163 -4.6 -12.7 Xylose isomerase (EC 5.3.1.5) (from data) conserved
SMc02245 -4.6 -4.4 dihydroorotate dehydrogenase 2 compare
SMc03069 -4.5 -3.3 6-phosphogluconolactonase compare
SMc02468 -4.5 -11.3 hypothetical protein conserved
SMc02766 -4.5 -3.1 tryptophan synthase subunit beta compare
SMc02755 -4.4 -5.3 S-adenosyl-L-homocysteine hydrolase compare
SMc00236 -4.4 -3.0 Indole-3-glycerol phosphate synthase compare
SMc00405 -4.4 -10.1 hypothetical protein compare
SMc02725 -4.3 -5.9 anthranilate synthase compare
SMc00017 -4.1 -2.4 homoserine kinase compare
SMc03777 -4.1 -9.0 gamma-glutamyl phosphate reductase compare
SMc03161 -4.0 -11.4 oxidoreductase compare
SMc00235 -4.0 -2.7 anthranilate phosphoribosyltransferase compare
SMc02765 -4.0 -4.7 tryptophan synthase subunit alpha compare
SMc02307 -3.9 -9.0 histidinol dehydrogenase compare
SMc00876 -3.9 -7.4 ATP-binding MRP protein compare
SMc01770 -3.9 -1.7 serine hydroxymethyltransferase compare
SMc02767 -3.8 -4.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc02165 -3.8 -2.6 orotate phosphoribosyltransferase compare
SMa1635 -3.8 -1.6 hypothetical protein compare
SM_b21177 -3.8 -8.3 phosphate uptake ABC transporter ATP-binding protein compare
SMc00412 -3.7 -2.5 orotidine 5'-phosphate decarboxylase compare
SMc03795 -3.7 -2.0 isopropylmalate isomerase small subunit compare
SMc01881 -3.6 -4.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc01053 -3.6 -4.7 siroheme synthase compare
SM_b21175 -3.5 -5.1 phosphate uptake ABC transporter permease compare
SMc01880 -3.4 -2.4 pantoate--beta-alanine ligase compare
SMc03165 -3.4 -4.1 Novel Xylose regulator from LacI family (from data) compare
SMc03981 -3.3 -5.7 phosphoglycerate kinase compare
SMc02138 -3.3 -6.0 acetylornithine transaminase compare
SMc02166 -3.2 -9.5 dihydroorotase compare
SMc03979 -3.2 -2.3 glyceraldehyde-3-phosphate dehydrogenase compare
SMc04262 -3.2 -11.8 6-phosphogluconate dehydrogenase compare
SMc00641 -3.2 -4.5 D-3-phosphoglycerate dehydrogenase compare
SMc04346 -3.1 -3.7 ketol-acid reductoisomerase compare
SM_b21176 -3.1 -5.1 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc00294 -3.1 -9.6 aminotransferase compare
SMc01360 -3.0 -2.9 aspartate carbamoyltransferase catalytic subunit compare
SMc01361 -3.0 -2.9 dihydroorotase compare
SMc02246 -2.9 -1.2 hypothetical protein compare
SMc03229 -2.9 -1.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc02707 -2.8 -6.4 hypothetical protein compare
SMc02983 -2.7 -7.9 ornithine, DAP, or arginine decarboxylase compare
SM_b21174 -2.7 -4.6 phosphate uptake ABC transporter permease compare
SMc03162 -2.6 -9.6 3-ketoglucose dehydratase (from data) conserved
SMc03997 -2.6 -9.8 hypothetical protein conserved
SMc03826 -2.6 -1.8 argininosuccinate synthase compare
SMc02172 -2.5 -10.0 transcriptional regulator compare
SMc00815 -2.5 -2.0 inosine 5'-monophosphate dehydrogenase compare
SMc03978 -2.4 -1.6 transketolase compare
SMc01124 -2.3 -7.0 PII uridylyl-transferase compare
SMc00619 -2.3 -2.1 hypothetical protein compare
SMc02055 -2.2 -2.1 phytoene synthase compare
SMc03974 -2.0 -7.4 hypothetical protein compare
SMc00414 -1.9 -8.7 hypothetical protein compare
SMc02558 -1.9 -6.0 hypothetical protein compare
SM_b20307 -1.9 -1.1 dihydroxyacetone kinase compare
SM_b20746 -1.9 -1.5 hypothetical protein compare
SMc03763 -1.8 -1.3 cytosine-specific methyltransferase compare
SMa2020 -1.8 -5.1 Transcriptional regulator compare
SMc00982 -1.8 -5.5 dioxygenase compare
SMc02308 -1.8 -4.6 hypothetical protein compare
SMc00010 -1.8 -1.7 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc02112 -1.8 -6.5 hypothetical protein compare
SMc02495 -1.8 -1.7 translaldolase compare
SMc01430 -1.7 -3.9 acetolactate synthase 3 regulatory subunit compare
SMc02521 -1.6 -4.6 glycerol-3-phosphate regulon repressor transcription regulator protein compare
SM_b20953 -1.6 -1.6 hypothetical protein compare
SMc03153 -1.6 -3.6 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
SMa1174 -1.6 -2.5 hypothetical protein compare
SMc00450 -1.5 -1.7 protoheme IX farnesyltransferase compare
SMc01569 -1.5 -0.8 carbamoyl phosphate synthase small subunit compare
SMc04330 -1.5 -2.4 trimethylamine methyltransferase compare
SMc02164 -1.5 -3.4 fructokinase compare
SMc01028 -1.5 -8.5 phosphopyruvate hydratase compare
SMa1365 -1.5 -2.2 ATP-binding protein compare
SMc00981 -1.5 -6.5 ferredoxin protein compare
SMc01215 -1.4 -1.0 carbamoyl phosphate synthase large subunit compare
SMc04000 -1.4 -1.2 hypothetical protein compare
SMc01842 -1.4 -1.5 methyltransferase transcription regulator protein compare
SMc01206 -1.4 -1.8 queuine tRNA-ribosyltransferase compare
SMc00963 -1.4 -2.4 hypothetical protein compare
SM_b20313 -1.4 -6.4 glycerone kinase compare
SMc02049 -1.4 -10.0 glycine dehydrogenase compare
SMc02574 -1.4 -2.7 imidazoleglycerol-phosphate dehydratase compare
SM_b20026 -1.4 -2.2 hypothetical protein compare
SMc03839 -1.4 -1.2 hypothetical protein compare
SMc00404 -1.3 -1.2 hypothetical protein compare
SMc04005 -1.3 -6.4 pyruvate kinase compare
SM_b20021 -1.3 -1.0 transcriptional regulator compare
SMc01578 -1.3 -7.7 aspartate aminotransferase compare
SMc02451 -1.3 -1.4 hypothetical protein compare
SMc02048 -1.3 -5.1 glycine cleavage system protein H compare
SMc00013 -1.2 -1.5 cytochrome C oxidase subunit III transmembrane protein compare
SM_b20392 -1.2 -4.4 transcriptional regulator NanR compare
SMa1053 -1.2 -1.6 hypothetical protein compare
SMc00073 -1.2 -1.9 hypothetical protein compare
SMc01495 -1.1 -3.6 transcriptional regulator compare
SMc00928 -1.1 -1.1 signal peptide protein compare
SMc00419 -1.1 -2.5 glutathione synthetase compare
SMc00492 -1.1 -0.7 hypothetical protein compare
SMc01119 -1.1 -2.2 hypothetical protein compare
SM_b20312 -1.1 -5.1 dihydroxyacetone kinase compare
SMc01147 -1.1 -2.4 coproporphyrinogen III oxidase compare
SMa2168 -1.1 -1.5 tRNA-Met compare
SM_b20884 -1.1 -2.2 hypothetical protein compare
SMc02980 -1.1 -1.5 hypothetical protein compare
SMc00025 -1.1 -3.9 pyruvate phosphate dikinase compare
SMc03849 -1.0 -0.7 heme exporter C (cytochrome C-type biogenesis protein) transmembrane compare
SM_b20314 -1.0 -4.9 glycerone kinase compare
SMc02850 -1.0 -2.2 DNA polymerase I compare
SMc01260 -1.0 -3.2 transcriptional regulator compare
SMc01441 -1.0 -3.2 membrane bound protease compare
SMc02435 -1.0 -1.8 methyltransferase compare
SMc02050 -1.0 -2.6 trigger factor compare
SM_b20148 -1.0 -3.0 transcriptional regulator compare
SMc00496 -1.0 -1.3 hypothetical protein compare
SMa1770 -1.0 -1.0 hypothetical protein compare
SMc02147 -1.0 -3.8 phosphate regulon sensor histidine kinase transmembrane protein compare
SMc00605 -1.0 -1.5 hypothetical protein compare
SMc02460 -1.0 -7.4 hypothetical protein compare
SMa0431 -1.0 -1.2 hypothetical protein compare
SMc01447 -1.0 -1.1 hypothetical protein compare
SMc00189 -1.0 -2.7 cytochrome C1 protein compare
SMc01164 -1.0 -4.4 hypothetical protein compare
SMc02140 -1.0 -1.1 phosphate regulon transcriptional regulatory protein compare
SMc00009 -1.0 -4.0 cytochrome C oxidase subunit II protein compare
SM_b21400 -1.0 -1.9 hypothetical protein compare
SMc02434 -0.9 -1.8 hypothetical protein compare
SM_b20837 -0.9 -2.0 hypothetical protein compare
SMc03798 -0.9 -3.7 aldose 1-epimerase compare
SMc04454 -0.9 -3.1 ABC transporter ATP-binding protein compare
SMa0341 -0.9 -1.8 hypothetical protein compare
SM_b20773 -0.9 -1.9 GntR family transcriptional regulator compare
SMc04224 -0.9 -1.4 hypothetical protein compare
SMc03967 -0.9 -0.9 Holliday junction resolvase compare
SMa1697 -0.9 -1.4 hypothetical protein compare
SMc02901 -0.9 -0.8 hypothetical protein compare
SMc02694 -0.9 -1.2 ATP-dependent Clp protease adaptor compare
SMc02724 -0.8 -2.1 hypothetical protein compare
SMc02838 -0.8 -3.5 phosphoglyceromutase compare
SMc03780 -0.8 -2.0 hypothetical protein compare
SMc02141 -0.8 -1.5 phosphate transporter PhoU compare
SMc02861 -0.8 -1.7 phosphate transporter compare
SMa0789 -0.8 -2.0 GntR family transcriptional regulator compare
SMc02071 -0.8 -2.1 hydrolase glycosidase compare
SMc04319 -0.8 -1.4 hypothetical protein compare
SMc02690 -0.8 -2.3 hypothetical protein compare
SMc04085 -0.8 -2.5 hypothetical protein compare
SMc00188 -0.8 -4.6 cytochrome B transmembrane protein compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source methyl-beta-D-xylopyranoside in Sinorhizobium meliloti 1021

For carbon source methyl-beta-D-xylopyranoside across organisms