Experiment set17IT034 for Pseudomonas stutzeri RCH2

Compare to:

LB with Nickel (II) chloride hexahydrate 0.9 mM

200 most important genes:

  gene name fitness t score description  
Psest_3338 -4.0 -2.1 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_0397 -3.9 -14.0 Small-conductance mechanosensitive channel compare
Psest_0212 -3.0 -3.3 exodeoxyribonuclease V, gamma subunit compare
Psest_1463 -3.0 -1.3 SufE protein probably involved in Fe-S center assembly compare
Psest_0498 -2.9 -1.5 ribosome small subunit-dependent GTPase A compare
Psest_0844 -2.8 -5.1 High-affinity Fe2+/Pb2+ permease compare
Psest_3400 -2.8 -1.4 Copper resistance protein D. compare
Psest_0697 -2.7 -4.0 ribosomal protein L9 compare
Psest_2855 -2.6 -1.9 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0708 -2.5 -1.9 outer membrane assembly lipoprotein YfiO compare
Psest_3828 -2.5 -1.4 zinc-binding alcohol dehydrogenase family protein compare
Psest_3351 -2.4 -6.0 peptide chain release factor 3 compare
Psest_0164 -2.4 -1.1 Glutaredoxin, GrxC family compare
Psest_1087 -2.4 -1.1 uncharacterized peroxidase-related enzyme compare
Psest_2988 -2.3 -7.4 aspartate kinase, monofunctional class compare
Psest_0843 -2.3 -10.8 hypothetical protein compare
Psest_2585 -2.1 -1.0 pseudouridylate synthase I compare
Psest_2945 -2.1 -1.6 septum site-determining protein MinC compare
Psest_2810 -2.1 -6.0 5'/3'-nucleotidase SurE compare
Psest_2011 -2.0 -8.6 Predicted permease compare
Psest_1179 -2.0 -2.1 2-hydroxy-3-oxopropionate reductase compare
Psest_1837 -2.0 -7.5 Endoglucanase compare
Psest_2872 -1.9 -2.1 protein RecA compare
Psest_2645 -1.9 -5.6 Transcriptional regulator compare
Psest_2088 -1.9 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_2775 -1.8 -3.4 Glycerol-3-phosphate dehydrogenase compare
Psest_0442 -1.8 -2.5 ATPases of the AAA+ class compare
Psest_3056 -1.8 -5.0 hypothetical protein compare
Psest_3536 -1.7 -1.4 hypothetical protein compare
Psest_1679 -1.7 -1.9 ribonuclease, Rne/Rng family compare
Psest_0846 -1.6 -2.5 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_3991 -1.6 -1.8 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_0845 -1.6 -0.9 hypothetical protein compare
Psest_0662 -1.6 -2.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2718 -1.6 -1.3 hypothetical protein compare
Psest_2766 -1.5 -1.0 hypothetical protein compare
Psest_4219 -1.5 -2.6 DNA polymerase I compare
Psest_3045 -1.5 -2.1 Cold shock proteins compare
Psest_0678 -1.4 -3.4 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_0028 -1.4 -3.7 Coproporphyrinogen III oxidase compare
Psest_1013 -1.4 -3.0 phosphoribosylamine--glycine ligase compare
Psest_0193 -1.4 -1.3 conserved hypothetical protein compare
Psest_4128 -1.4 -1.2 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3226 -1.4 -1.0 Predicted membrane protein compare
Psest_0417 -1.4 -1.9 Acyl-CoA dehydrogenases compare
Psest_3100 -1.4 -1.3 RNA polymerase sigma factor RpoE compare
Psest_1496 -1.4 -1.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_1772 -1.4 -4.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0508 -1.3 -5.0 gamma-glutamyl phosphate reductase compare
Psest_0133 -1.3 -0.8 type VI secretion protein, VC_A0107 family compare
Psest_1877 -1.3 -3.1 AraC-type DNA-binding domain-containing proteins compare
Psest_3490 -1.3 -2.6 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_3237 -1.3 -1.2 hypothetical protein compare
Psest_0259 -1.3 -1.1 cell division ATP-binding protein FtsE compare
Psest_2923 -1.3 -1.6 hypothetical protein compare
Psest_1459 -1.3 -3.7 hypothetical protein compare
Psest_2104 -1.2 -0.8 IscR-regulated protein YhgI compare
Psest_2015 -1.2 -2.5 Type II secretory pathway, component PulD compare
Psest_1318 -1.2 -3.7 ABC-type phosphate/phosphonate transport system, permease component compare
Psest_1986 -1.2 -1.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_0175 -1.2 -4.2 Xaa-Pro aminopeptidase compare
Psest_0182 -1.2 -4.2 glycine cleavage system H protein compare
Psest_1204 -1.2 -2.5 Transcriptional regulators compare
Psest_3146 -1.2 -1.6 hypothetical protein compare
Psest_4044 -1.2 -2.3 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3384 -1.2 -4.9 glutamate 5-kinase compare
Psest_2759 -1.1 -4.6 Co/Zn/Cd efflux system component compare
Psest_1704 -1.1 -1.1 Dehydrogenases (flavoproteins) compare
Psest_0823 -1.1 -2.3 Transcriptional regulators compare
Psest_1206 -1.1 -1.5 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_3367 -1.1 -1.2 translation initation factor SUI1, putative, prokaryotic compare
Psest_4088 -1.1 -2.4 Transcriptional regulators compare
Psest_0515 -1.1 -3.1 rare lipoprotein A compare
Psest_1612 -1.1 -3.1 ABC-type multidrug transport system, ATPase component compare
Psest_1551 -1.1 -2.2 Integral membrane protein, interacts with FtsH compare
Psest_2901 -1.1 -1.4 hypothetical protein compare
Psest_2240 -1.1 -1.7 hypothetical protein compare
Psest_0359 -1.1 -1.4 Transcriptional regulators compare
Psest_4310 -1.1 -1.2 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_3645 -1.1 -5.1 Predicted redox protein, regulator of disulfide bond formation compare
Psest_4170 -1.1 -1.5 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_3535 -1.1 -3.2 hypothetical protein compare
Psest_3878 -1.1 -1.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2092 -1.1 -1.9 hypothetical protein compare
Psest_2253 -1.0 -1.9 small redox-active disulfide protein 2 compare
Psest_3231 -1.0 -1.9 hypothetical protein compare
Psest_0855 -1.0 -4.2 NAD-dependent aldehyde dehydrogenases compare
Psest_0514 -1.0 -3.1 lytic murein transglycosylase B compare
Psest_2752 -1.0 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0393 -1.0 -4.1 Methylase of chemotaxis methyl-accepting proteins compare
Psest_0165 -1.0 -1.6 protein-export chaperone SecB compare
Psest_1167 -1.0 -0.7 hypothetical protein compare
Psest_1366 -1.0 -1.3 hypothetical protein compare
Psest_1804 -1.0 -1.6 Superfamily II DNA and RNA helicases compare
Psest_2370 -1.0 -2.3 Protein of unknown function (DUF1652). compare
Psest_4178 -1.0 -2.2 hypothetical protein compare
Psest_3546 -1.0 -0.9 Phosphatidylglycerophosphatase A and related proteins compare
Psest_3894 -1.0 -3.4 Carbon starvation protein, predicted membrane protein compare
Psest_0385 -1.0 -1.6 Conserved secreted protein compare
Psest_0191 -1.0 -0.4 PAS domain S-box compare
Psest_0737 -1.0 -0.7 Cu(I)-responsive transcriptional regulator compare
Psest_3842 -0.9 -2.9 Transcriptional regulators compare
Psest_0061 -0.9 -1.2 hypothetical protein compare
Psest_1055 -0.9 -6.0 Saccharopine dehydrogenase and related proteins compare
Psest_1326 -0.9 -2.0 Uncharacterized conserved protein compare
Psest_1632 -0.9 -2.2 Predicted permeases compare
Psest_3215 -0.9 -2.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Psest_3435 -0.9 -3.9 hypothetical protein compare
Psest_1248 -0.9 -3.7 RNA methyltransferase, TrmH family, group 1 compare
Psest_0089 -0.9 -3.7 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN compare
Psest_3816 -0.9 -0.6 DNA-directed RNA polymerase, omega subunit compare
Psest_3013 -0.9 -1.6 cobyrinic acid a,c-diamide synthase compare
Psest_2772 -0.9 -2.6 MIP family channel proteins compare
Psest_0243 -0.9 -0.9 hypothetical protein compare
Psest_0398 -0.9 -2.7 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_1176 -0.9 -2.1 Urea transporter compare
Psest_2896 -0.9 -1.6 hypothetical protein compare
Psest_4241 -0.9 -2.7 hypothetical protein compare
Psest_2892 -0.9 -1.4 Transcriptional regulator compare
Psest_1313 -0.9 -1.0 Uncharacterized conserved small protein compare
Psest_3317 -0.9 -2.1 Phosphotransferase System HPr (HPr) Family compare
Psest_1582 -0.9 -2.2 Protein of unknown function (DUF3087). compare
Psest_3767 -0.9 -3.0 tyrosine recombinase XerC compare
Psest_2446 -0.9 -1.6 acetyl-CoA acetyltransferases compare
Psest_1505 -0.9 -1.4 Organic radical activating enzymes compare
Psest_2743 -0.9 -2.0 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_1640 -0.9 -5.4 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_1082 -0.9 -1.3 Enoyl-CoA hydratase/carnithine racemase compare
Psest_0368 -0.9 -0.9 Transcriptional regulator compare
Psest_2976 -0.9 -0.8 hypothetical protein compare
Psest_3458 -0.9 -2.1 hypothetical protein compare
Psest_0006 -0.8 -3.1 alkyl hydroperoxide reductase, F subunit compare
Psest_1271 -0.8 -3.3 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family compare
Psest_3456 -0.8 -1.0 RNA polymerase sigma factor, sigma-70 family compare
Psest_0113 -0.8 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_0325 -0.8 -4.6 Putative threonine efflux protein compare
Psest_4042 -0.8 -1.6 hypothetical protein compare
Psest_4345 -0.8 -3.9 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_2442 -0.8 -1.5 hypothetical protein compare
Psest_0115 -0.8 -0.9 Predicted integral membrane protein compare
Psest_1354 -0.8 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_0300 -0.8 -4.8 Methyl-accepting chemotaxis protein compare
Psest_3862 -0.8 -4.9 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2018 -0.8 -1.4 Uncharacterized conserved protein compare
Psest_0707 -0.8 -3.6 MYND finger. compare
Psest_0152 -0.8 -2.3 Imidazoleglycerol-phosphate dehydratase compare
Psest_2626 -0.8 -1.4 Flp pilus assembly protein CpaB compare
Psest_2101 -0.8 -0.7 hypothetical protein compare
Psest_3921 -0.8 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_0999 -0.8 -1.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0691 -0.8 -4.6 ribonuclease R compare
Psest_3562 -0.8 -1.4 ABC-type antimicrobial peptide transport system, ATPase component compare
Psest_2077 -0.8 -4.4 hypothetical protein compare
Psest_4350 -0.8 -1.9 Transcriptional regulators of sugar metabolism compare
Psest_2047 -0.8 -2.3 Signal transduction histidine kinase compare
Psest_0437 -0.8 -1.8 hypothetical protein compare
Psest_0086 -0.8 -1.9 hypothetical protein compare
Psest_3306 -0.8 -2.0 conserved hypothetical integral membrane protein compare
Psest_2764 -0.8 -0.9 hypothetical protein compare
Psest_3944 -0.8 -1.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_2605 -0.8 -1.3 transcriptional activator RfaH compare
Psest_3527 -0.8 -2.5 Pseudouridylate synthases, 23S RNA-specific compare
Psest_4045 -0.8 -2.8 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen compare
Psest_1166 -0.8 -1.1 transcriptional regulator, ArgP family compare
Psest_4343 -0.8 -1.6 Protein of unknown function (DUF3301). compare
Psest_1600 -0.8 -1.1 hypothetical protein compare
Psest_2001 -0.8 -1.0 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3014 -0.8 -1.2 cob(I)alamin adenosyltransferase compare
Psest_3908 -0.8 -0.9 Cytochrome c553 compare
Psest_3884 -0.7 -0.7 Signal transduction histidine kinase compare
Psest_4005 -0.7 -3.2 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_3693 -0.7 -1.3 Glycosyltransferases involved in cell wall biogenesis compare
Psest_0510 -0.7 -2.0 iojap-like ribosome-associated protein compare
Psest_3827 -0.7 -1.9 Transcriptional regulator compare
Psest_4147 -0.7 -1.6 Flagellar basal body L-ring protein compare
Psest_1429 -0.7 -2.6 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit compare
Psest_1709 -0.7 -1.4 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3962 -0.7 -1.0 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_2646 -0.7 -1.2 SOS regulatory protein LexA compare
Psest_0031 -0.7 -0.9 Uncharacterized conserved protein compare
Psest_4363 -0.7 -3.5 ATPases involved in chromosome partitioning compare
Psest_4307 -0.7 -2.2 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_3455 -0.7 -1.3 Dihaem cytochrome c. compare
Psest_1376 -0.7 -2.6 hypothetical protein compare
Psest_4406 -0.7 -0.8 hypothetical protein compare
Psest_2647 -0.7 -0.8 SOS-response cell division inhibitor, blocks FtsZ ring formation compare
Psest_1474 -0.7 -1.4 phosphoribosylaminoimidazole synthetase compare
Psest_3331 -0.7 -1.6 rare lipoprotein A compare
Psest_1078 -0.7 -2.4 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (from data) compare
Psest_1260 -0.7 -2.8 type IV pilus biogenesis/stability protein PilW compare
Psest_3305 -0.7 -4.0 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_1958 -0.7 -2.3 Glutaredoxin-like domain (DUF836). compare
Psest_0958 -0.7 -2.8 Oligoketide cyclase/lipid transport protein compare
Psest_3002 -0.7 -1.0 Putative translation initiation inhibitor, yjgF family compare
Psest_3128 -0.7 -1.5 Protein-disulfide isomerase compare
Psest_0020 -0.7 -2.6 K+ transport systems, NAD-binding component compare
Psest_2618 -0.7 -2.0 Flp pilus assembly protein TadB compare
Psest_1235 -0.7 -2.9 Leucyl aminopeptidase compare
Psest_3925 -0.7 -2.5 Methyl-accepting chemotaxis protein compare
Psest_4390 -0.7 -2.0 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Pseudomonas stutzeri RCH2

For stress Nickel (II) chloride hexahydrate across organisms