Experiment set17IT033 for Pseudomonas stutzeri RCH2

Compare to:

LB with Nickel (II) chloride hexahydrate 0.8 mM

200 most important genes:

  gene name fitness t score description  
Psest_0498 -4.3 -1.9 ribosome small subunit-dependent GTPase A compare
Psest_3338 -3.9 -2.1 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_3546 -3.7 -1.4 Phosphatidylglycerophosphatase A and related proteins compare
Psest_2945 -3.2 -1.9 septum site-determining protein MinC compare
Psest_0725 -3.2 -2.2 Negative regulator of beta-lactamase expression compare
Psest_0678 -2.9 -4.4 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_3129 -2.9 -1.5 tyrosine recombinase XerD compare
Psest_2872 -2.8 -2.8 protein RecA compare
Psest_0397 -2.7 -12.7 Small-conductance mechanosensitive channel compare
Psest_1999 -2.5 -1.3 pseudouridine synthase compare
Psest_3351 -2.3 -5.4 peptide chain release factor 3 compare
Psest_4128 -2.3 -2.0 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1679 -2.3 -1.8 ribonuclease, Rne/Rng family compare
Psest_3270 -2.2 -2.5 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_2293 -2.2 -1.1 hypothetical protein compare
Psest_0844 -2.1 -4.4 High-affinity Fe2+/Pb2+ permease compare
Psest_1782 -2.1 -2.0 Predicted transcriptional regulators compare
Psest_3768 -2.0 -4.4 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_0843 -1.9 -10.2 hypothetical protein compare
Psest_1313 -1.9 -1.5 Uncharacterized conserved small protein compare
Psest_3496 -1.9 -1.3 Predicted metal-binding protein compare
Psest_2088 -1.9 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_0442 -1.9 -2.2 ATPases of the AAA+ class compare
Psest_0182 -1.8 -7.6 glycine cleavage system H protein compare
Psest_3565 -1.8 -1.4 hypothetical protein compare
Psest_2018 -1.8 -2.9 Uncharacterized conserved protein compare
Psest_2775 -1.8 -3.3 Glycerol-3-phosphate dehydrogenase compare
Psest_1951 -1.7 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_1354 -1.7 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_0357 -1.7 -3.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2067 -1.6 -1.4 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0697 -1.6 -2.9 ribosomal protein L9 compare
Psest_2557 -1.6 -2.2 Protein of unknown function (DUF2474). compare
Psest_0309 -1.6 -1.1 RND family efflux transporter, MFP subunit compare
Psest_1496 -1.6 -1.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_0846 -1.6 -2.9 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_3146 -1.6 -1.5 hypothetical protein compare
Psest_4178 -1.6 -3.9 hypothetical protein compare
Psest_3904 -1.6 -1.8 hypothetical protein compare
Psest_2520 -1.5 -1.3 Predicted SAM-dependent methyltransferase compare
Psest_2645 -1.5 -5.6 Transcriptional regulator compare
Psest_2011 -1.5 -7.0 Predicted permease compare
Psest_3339 -1.5 -3.7 Signal transduction histidine kinase compare
Psest_0277 -1.5 -1.4 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_1643 -1.5 -1.1 hypothetical protein compare
Psest_0514 -1.5 -4.2 lytic murein transglycosylase B compare
Psest_1700 -1.5 -3.3 Transcriptional regulator compare
Psest_0573 -1.4 -4.9 cation diffusion facilitator family transporter conserved
Psest_3168 -1.4 -1.5 Molybdopterin converting factor, large subunit compare
Psest_2975 -1.4 -2.0 tRNA_Arg_CCT compare
Psest_1510 -1.4 -2.6 Putative Zn-dependent protease, contains TPR repeats compare
Psest_4371 -1.4 -2.1 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_0115 -1.3 -1.2 Predicted integral membrane protein compare
Psest_1056 -1.3 -1.6 2-isopropylmalate synthase, bacterial type compare
Psest_0466 -1.3 -3.4 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3212 -1.3 -3.1 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_0417 -1.3 -2.0 Acyl-CoA dehydrogenases compare
Psest_3045 -1.3 -1.7 Cold shock proteins compare
Psest_4044 -1.2 -2.1 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0872 -1.2 -0.7 Helix-turn-helix. compare
Psest_2308 -1.2 -0.8 Predicted Fe-S protein compare
Psest_4363 -1.2 -5.2 ATPases involved in chromosome partitioning compare
Psest_0485 -1.2 -2.8 clan AA aspartic protease, TIGR02281 family compare
Psest_1227 -1.2 -2.4 Predicted SAM-dependent methyltransferase compare
Psest_0533 -1.1 -3.0 Sel1 repeat. compare
Psest_2953 -1.1 -1.1 Histone acetyltransferase compare
Psest_1012 -1.1 -3.3 Signal transduction histidine kinase compare
Psest_1704 -1.1 -1.0 Dehydrogenases (flavoproteins) compare
Psest_0028 -1.1 -4.0 Coproporphyrinogen III oxidase compare
Psest_1322 -1.1 -1.4 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_0988 -1.1 -2.1 Protein of unknown function (DUF2845). compare
Psest_1058 -1.1 -2.0 ribosomal-protein-alanine acetyltransferase compare
Psest_2650 -1.1 -2.1 hypothetical protein compare
Psest_2863 -1.1 -4.1 Transcriptional regulator compare
Psest_1398 -1.1 -3.0 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_4064 -1.1 -2.0 Lactate dehydrogenase and related dehydrogenases compare
Psest_0294 -1.1 -2.5 Putative transcriptional regulator compare
Psest_3962 -1.0 -1.2 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_4090 -1.0 -2.3 diaminobutyrate acetyltransferase compare
Psest_3902 -1.0 -2.6 hypothetical protein compare
Psest_0141 -1.0 -4.1 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_0919 -1.0 -1.7 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_3435 -1.0 -3.7 hypothetical protein compare
Psest_0191 -1.0 -0.7 PAS domain S-box compare
Psest_1305 -1.0 -1.7 Heat shock protein compare
Psest_0082 -1.0 -2.1 Domain of unknown function (DUF892). compare
Psest_1994 -1.0 -1.9 Amidases related to nicotinamidase compare
Psest_4151 -1.0 -2.0 Flagellar hook capping protein compare
Psest_0508 -1.0 -4.6 gamma-glutamyl phosphate reductase compare
Psest_2988 -1.0 -4.0 aspartate kinase, monofunctional class compare
Psest_4405 -1.0 -1.5 hypothetical protein compare
Psest_3535 -1.0 -2.2 hypothetical protein compare
Psest_3100 -1.0 -1.4 RNA polymerase sigma factor RpoE compare
Psest_1504 -1.0 -3.4 tol-pal system protein YbgF compare
Psest_1118 -1.0 -1.7 Predicted Fe-S-cluster oxidoreductase compare
Psest_1809 -0.9 -4.8 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1295 -0.9 -3.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3727 -0.9 -3.0 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_2343 -0.9 -2.0 Mg-dependent DNase compare
Psest_2424 -0.9 -1.0 K+ transport systems, NAD-binding component compare
Psest_2446 -0.9 -1.7 acetyl-CoA acetyltransferases compare
Psest_0845 -0.9 -0.6 hypothetical protein compare
Psest_0660 -0.9 -1.4 Methyl-accepting chemotaxis protein compare
Psest_3177 -0.9 -1.0 hypothetical protein compare
Psest_1695 -0.9 -2.3 Tfp pilus assembly protein PilZ compare
Psest_3247 -0.9 -0.9 Uncharacterized membrane protein compare
Psest_1642 -0.9 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_1717 -0.9 -2.8 benzoate transporter compare
Psest_1535 -0.9 -2.3 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
Psest_3306 -0.9 -2.6 conserved hypothetical integral membrane protein compare
Psest_1657 -0.9 -1.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0175 -0.9 -3.6 Xaa-Pro aminopeptidase compare
Psest_3828 -0.9 -0.7 zinc-binding alcohol dehydrogenase family protein compare
Psest_2532 -0.9 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_3645 -0.9 -4.1 Predicted redox protein, regulator of disulfide bond formation compare
Psest_4005 -0.8 -2.6 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_2810 -0.8 -2.7 5'/3'-nucleotidase SurE compare
Psest_2357 -0.8 -1.5 Short-chain dehydrogenases of various substrate specificities compare
Psest_1960 -0.8 -1.3 Bacterial protein of unknown function (DUF903). compare
Psest_0740 -0.8 -1.3 Transcriptional regulator compare
Psest_3937 -0.8 -1.0 ATP-dependent protease HslVU, ATPase subunit compare
Psest_1078 -0.8 -2.1 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (from data) compare
Psest_3303 -0.8 -3.0 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3304 -0.8 -3.0 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_1752 -0.8 -1.1 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_0398 -0.8 -2.6 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_1947 -0.8 -0.5 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2579 -0.8 -3.0 amidophosphoribosyltransferase compare
Psest_2748 -0.8 -1.0 Transcriptional regulator compare
Psest_4345 -0.8 -4.2 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_0083 -0.8 -1.4 Uncharacterized conserved protein compare
Psest_3502 -0.8 -1.1 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family compare
Psest_4082 -0.8 -1.6 hypothetical protein compare
Psest_0705 -0.8 -4.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2848 -0.8 -1.0 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_2991 -0.8 -2.3 hypothetical protein compare
Psest_0855 -0.8 -2.2 NAD-dependent aldehyde dehydrogenases compare
Psest_2855 -0.8 -0.8 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3001 -0.8 -1.9 molybdenum ABC transporter, ATP-binding protein compare
Psest_0515 -0.8 -1.8 rare lipoprotein A compare
Psest_0087 -0.8 -2.5 hypothetical protein compare
Psest_1636 -0.8 -2.1 putative transporter, required for glycine utilization (from data) compare
Psest_4054 -0.8 -2.1 alkanesulfonate monooxygenase, FMNH(2)-dependent compare
Psest_0113 -0.8 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_0257 -0.8 -1.2 Predicted Zn-dependent peptidases compare
Psest_1125 -0.8 -2.6 Protein of unknown function (DUF3509). compare
Psest_1946 -0.8 -2.4 Protein of unknown function (DUF2835). compare
Psest_4106 -0.7 -1.6 formate dehydrogenase, gamma subunit compare
Psest_4396 -0.7 -3.5 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_2411 -0.7 -2.8 PAS domain S-box compare
Psest_1323 -0.7 -2.0 Hydroxypyruvate isomerase compare
Psest_3878 -0.7 -1.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2177 -0.7 -2.2 Protein of unknown function (DUF1652). compare
Psest_2253 -0.7 -1.7 small redox-active disulfide protein 2 compare
Psest_3736 -0.7 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_3226 -0.7 -0.6 Predicted membrane protein compare
Psest_2651 -0.7 -1.8 DNA topoisomerase I, bacterial compare
Psest_3715 -0.7 -5.4 type IV pilus secretin (or competence protein) PilQ compare
Psest_3384 -0.7 -3.1 glutamate 5-kinase compare
Psest_3289 -0.7 -3.9 prepilin-type N-terminal cleavage/methylation domain compare
Psest_4310 -0.7 -0.9 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_3031 -0.7 -0.4 hypothetical protein compare
Psest_4209 -0.7 -1.7 Uncharacterized conserved small protein compare
Psest_2911 -0.7 -0.9 Protein of unknown function (DUF2945). compare
Psest_0128 -0.7 -1.9 hypothetical protein compare
Psest_4272 -0.7 -2.2 hypothetical protein compare
Psest_1622 -0.7 -1.9 hypothetical protein compare
Psest_3719 -0.7 -4.2 type IV pilus assembly protein PilM compare
Psest_2714 -0.7 -1.1 7-cyano-7-deazaguanine reductase compare
Psest_1904 -0.7 -1.7 Arabinose efflux permease compare
Psest_2646 -0.7 -0.8 SOS regulatory protein LexA compare
Psest_0299 -0.7 -1.7 Chemotaxis signal transduction protein compare
Psest_2594 -0.7 -1.7 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4309 -0.7 -1.6 ABC-type Mn/Zn transport systems, ATPase component compare
Psest_3459 -0.7 -2.2 hypothetical protein compare
Psest_0647 -0.7 -3.3 Arabinose efflux permease compare
Psest_0297 -0.7 -1.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0248 -0.7 -2.8 Transcriptional regulator compare
Psest_0609 -0.7 -0.7 hypothetical protein compare
Psest_1054 -0.7 -3.1 Diaminopimelate decarboxylase compare
Psest_2341 -0.7 -1.7 Lipase chaperone compare
Psest_3399 -0.7 -0.6 Uncharacterized protein conserved in bacteria compare
Psest_1772 -0.7 -1.4 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3717 -0.7 -2.9 Tfp pilus assembly protein PilO compare
Psest_2123 -0.7 -1.2 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_4191 -0.7 -1.5 Transcriptional regulator compare
Psest_4370 -0.7 -1.3 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1208 -0.7 -3.2 guanine deaminase compare
Psest_3707 -0.7 -1.8 Transcriptional regulator compare
Psest_1765 -0.7 -2.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1879 -0.7 -1.5 Trk-type K+ transport systems, membrane components compare
Psest_0890 -0.7 -2.5 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase compare
Psest_3692 -0.7 -1.8 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_1804 -0.7 -1.1 Superfamily II DNA and RNA helicases compare
Psest_3767 -0.7 -1.7 tyrosine recombinase XerC compare
Psest_0521 -0.7 -3.3 lytic murein transglycosylase compare
Psest_0584 -0.7 -2.3 hypothetical protein compare
Psest_1464 -0.7 -2.8 Selenocysteine lyase compare
Psest_3159 -0.6 -2.7 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1248 -0.6 -2.6 RNA methyltransferase, TrmH family, group 1 compare


Specific Phenotypes

For 1 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Pseudomonas stutzeri RCH2

For stress Nickel (II) chloride hexahydrate across organisms