Experiment set17IT032 for Pseudomonas stutzeri RCH2

Compare to:

LB with Nickel (II) chloride hexahydrate 0.75 mM

200 most important genes:

  gene name fitness t score description  
Psest_1306 -5.1 -2.6 hypothetical protein compare
Psest_1496 -4.2 -1.8 Holliday junction DNA helicase, RuvA subunit compare
Psest_2872 -4.1 -2.5 protein RecA compare
Psest_3338 -4.0 -2.0 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_0498 -3.5 -2.2 ribosome small subunit-dependent GTPase A compare
Psest_3351 -2.4 -5.8 peptide chain release factor 3 compare
Psest_2786 -2.4 -1.2 Domain of unknown function (DUF3597). compare
Psest_1167 -2.2 -1.1 hypothetical protein compare
Psest_4303 -2.2 -2.3 HEAT repeat. compare
Psest_0309 -2.1 -1.4 RND family efflux transporter, MFP subunit compare
Psest_0191 -2.0 -1.0 PAS domain S-box compare
Psest_0028 -1.9 -5.4 Coproporphyrinogen III oxidase compare
Psest_1185 -1.9 -2.4 heavy metal response regulator compare
Psest_1087 -1.9 -1.1 uncharacterized peroxidase-related enzyme compare
Psest_0533 -1.9 -4.4 Sel1 repeat. compare
Psest_1204 -1.9 -3.0 Transcriptional regulators compare
Psest_1510 -1.8 -3.2 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3766 -1.8 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_3247 -1.8 -1.6 Uncharacterized membrane protein compare
Psest_0678 -1.7 -3.7 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_3014 -1.7 -1.8 cob(I)alamin adenosyltransferase compare
Psest_2946 -1.7 -3.0 septum site-determining protein MinD compare
Psest_2067 -1.7 -1.4 ABC-type oligopeptide transport system, periplasmic component compare
Psest_1920 -1.7 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_3339 -1.7 -3.8 Signal transduction histidine kinase compare
Psest_3904 -1.7 -1.6 hypothetical protein compare
Psest_1149 -1.7 -2.9 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_3301 -1.7 -2.1 Predicted transcriptional regulator, BolA superfamily compare
Psest_2023 -1.7 -3.3 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_0466 -1.6 -3.8 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0514 -1.6 -5.5 lytic murein transglycosylase B compare
Psest_0846 -1.6 -3.3 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_3168 -1.6 -1.8 Molybdopterin converting factor, large subunit compare
Psest_0442 -1.6 -2.8 ATPases of the AAA+ class compare
Psest_0417 -1.6 -2.1 Acyl-CoA dehydrogenases compare
Psest_4044 -1.5 -1.5 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0164 -1.5 -0.8 Glutaredoxin, GrxC family compare
Psest_0958 -1.5 -5.9 Oligoketide cyclase/lipid transport protein compare
Psest_4405 -1.5 -1.6 hypothetical protein compare
Psest_1417 -1.5 -1.2 hypothetical protein compare
Psest_0078 -1.5 -0.9 hypothetical protein compare
Psest_3002 -1.5 -1.8 Putative translation initiation inhibitor, yjgF family compare
Psest_1663 -1.5 -2.7 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3060 -1.4 -3.7 hypothetical protein compare
Psest_3531 -1.4 -1.1 Peptidase propeptide and YPEB domain. compare
Psest_0844 -1.4 -2.8 High-affinity Fe2+/Pb2+ permease compare
Psest_4177 -1.4 -1.7 flagellar biosynthetic protein FliP compare
Psest_2018 -1.4 -2.4 Uncharacterized conserved protein compare
Psest_3850 -1.4 -0.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1704 -1.4 -0.9 Dehydrogenases (flavoproteins) compare
Psest_3100 -1.4 -1.3 RNA polymerase sigma factor RpoE compare
Psest_1602 -1.4 -1.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2232 -1.3 -8.8 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_1601 -1.3 -1.7 Signal transduction histidine kinase compare
Psest_2855 -1.3 -1.2 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0346 -1.3 -2.2 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_2613 -1.3 -1.3 hypothetical protein compare
Psest_0485 -1.3 -2.1 clan AA aspartic protease, TIGR02281 family compare
Psest_3306 -1.3 -4.4 conserved hypothetical integral membrane protein compare
Psest_3092 -1.3 -1.4 ribonuclease III, bacterial compare
Psest_0725 -1.3 -1.6 Negative regulator of beta-lactamase expression compare
Psest_3777 -1.2 -3.0 diguanylate cyclase (GGDEF) domain compare
Psest_2001 -1.2 -1.1 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_1163 -1.2 -3.0 diguanylate cyclase (GGDEF) domain compare
Psest_4274 -1.2 -1.9 hypothetical protein compare
Psest_2945 -1.2 -1.2 septum site-determining protein MinC compare
Psest_3113 -1.2 -1.1 electron transport complex, RnfABCDGE type, B subunit compare
Psest_1295 -1.2 -4.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1990 -1.2 -2.2 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Psest_0970 -1.2 -1.4 hypothetical protein compare
Psest_3212 -1.2 -2.7 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1804 -1.2 -1.7 Superfamily II DNA and RNA helicases compare
Psest_2434 -1.2 -2.9 Protein of unknown function (DUF2892). compare
Psest_0697 -1.1 -2.2 ribosomal protein L9 compare
Psest_1480 -1.1 -1.7 arsenate reductase (glutaredoxin) compare
Psest_2894 -1.1 -1.9 addiction module antidote protein, HigA family compare
Psest_3878 -1.1 -1.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2651 -1.1 -3.1 DNA topoisomerase I, bacterial compare
Psest_0165 -1.1 -2.7 protein-export chaperone SecB compare
Psest_2278 -1.1 -2.8 coenzyme PQQ biosynthesis protein PqqD compare
Psest_1691 -1.1 -2.7 aminodeoxychorismate lyase compare
Psest_3767 -1.1 -2.4 tyrosine recombinase XerC compare
Psest_1659 -1.1 -2.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1065 -1.1 -1.8 hypothetical protein compare
Psest_2810 -1.1 -2.8 5'/3'-nucleotidase SurE compare
Psest_4276 -1.1 -1.7 hypothetical protein compare
Psest_3784 -1.1 -1.7 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_3810 -1.1 -0.7 orotate phosphoribosyltransferase compare
Psest_2899 -1.1 -1.1 hypothetical protein compare
Psest_0409 -1.0 -1.4 Putative homoserine kinase type II (protein kinase fold) compare
Psest_2579 -1.0 -3.7 amidophosphoribosyltransferase compare
Psest_0141 -1.0 -3.1 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_0397 -1.0 -5.3 Small-conductance mechanosensitive channel compare
Psest_2088 -1.0 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_1814 -1.0 -7.3 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0257 -1.0 -1.8 Predicted Zn-dependent peptidases compare
Psest_3159 -1.0 -3.8 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0013 -1.0 -3.6 Lauroyl/myristoyl acyltransferase compare
Psest_3209 -1.0 -3.5 NADH:flavin oxidoreductases, Old Yellow Enzyme family compare
Psest_0087 -1.0 -2.5 hypothetical protein compare
Psest_3809 -1.0 -3.3 hypothetical protein compare
Psest_3645 -1.0 -5.6 Predicted redox protein, regulator of disulfide bond formation compare
Psest_3953 -1.0 -2.9 Bacterial lipocalin compare
Psest_4370 -1.0 -2.3 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_2681 -1.0 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_4158 -1.0 -1.3 Flagellar motor protein compare
Psest_2718 -0.9 -0.8 hypothetical protein compare
Psest_0175 -0.9 -3.7 Xaa-Pro aminopeptidase compare
Psest_3070 -0.9 -1.4 3-oxoadipyl-CoA thiolase compare
Psest_3944 -0.9 -2.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3546 -0.9 -0.7 Phosphatidylglycerophosphatase A and related proteins compare
Psest_0737 -0.9 -0.6 Cu(I)-responsive transcriptional regulator compare
Psest_3832 -0.9 -1.4 hypothetical protein compare
Psest_2229 -0.9 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_1322 -0.9 -1.2 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_1457 -0.9 -1.3 FOG: Ankyrin repeat compare
Psest_0791 -0.9 -2.5 Acyl-CoA dehydrogenases compare
Psest_3123 -0.9 -1.2 dihydroorotase, homodimeric type compare
Psest_1660 -0.9 -1.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_2141 -0.9 -3.4 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_4314 -0.9 -2.2 ABC-type metal ion transport system, ATPase component compare
Psest_0225 -0.9 -1.4 Predicted permease, DMT superfamily compare
Psest_0182 -0.9 -2.9 glycine cleavage system H protein compare
Psest_2646 -0.9 -1.4 SOS regulatory protein LexA compare
Psest_1293 -0.9 -0.7 VanZ like family. compare
Psest_3395 -0.9 -0.7 hypothetical protein compare
Psest_0334 -0.9 -2.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1997 -0.9 -1.2 6-phosphogluconolactonase compare
Psest_2645 -0.9 -3.2 Transcriptional regulator compare
Psest_0592 -0.9 -1.6 hypothetical protein compare
Psest_2670 -0.9 -3.0 Uncharacterized conserved protein compare
Psest_2011 -0.9 -4.4 Predicted permease compare
Psest_0662 -0.9 -1.3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2285 -0.8 -2.2 ATP-dependent protease La compare
Psest_0770 -0.8 -2.9 alkylphosphonate utilization operon protein PhnA compare
Psest_0531 -0.8 -4.1 Phosphate starvation-inducible protein PhoH, predicted ATPase compare
Psest_2730 -0.8 -3.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1661 -0.8 -1.3 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1600 -0.8 -1.4 hypothetical protein compare
Psest_3045 -0.8 -1.3 Cold shock proteins compare
Psest_2726 -0.8 -0.9 Rhodanese-related sulfurtransferase compare
Psest_1560 -0.8 -2.2 hypothetical protein compare
Psest_1489 -0.8 -1.7 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_2775 -0.8 -1.9 Glycerol-3-phosphate dehydrogenase compare
Psest_2225 -0.8 -1.8 Diacylglycerol kinase compare
Psest_1532 -0.8 -1.7 DNA recombination-dependent growth factor C compare
Psest_2282 -0.8 -2.3 Dihydroorotate dehydrogenase compare
Psest_3484 -0.8 -3.1 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_1592 -0.8 -2.6 hypothetical protein compare
Psest_3458 -0.8 -1.6 hypothetical protein compare
Psest_2629 -0.8 -1.5 Flp pilus assembly protein, pilin Flp compare
Psest_0857 -0.8 -0.8 Membrane transporters of cations and cationic drugs compare
Psest_4271 -0.8 -2.5 Predicted proline hydroxylase compare
Psest_1012 -0.8 -2.2 Signal transduction histidine kinase compare
Psest_4406 -0.8 -0.7 hypothetical protein compare
Psest_0393 -0.8 -2.7 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1695 -0.8 -1.7 Tfp pilus assembly protein PilZ compare
Psest_4345 -0.8 -3.8 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_2470 -0.8 -1.7 hypothetical protein compare
Psest_4170 -0.8 -1.1 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_1888 -0.8 -0.6 Sua5/YciO/YrdC/YwlC family protein compare
Psest_0988 -0.8 -0.7 Protein of unknown function (DUF2845). compare
Psest_3908 -0.8 -0.9 Cytochrome c553 compare
Psest_1863 -0.8 -1.1 hypothetical protein compare
Psest_1035 -0.8 -2.5 hypothetical protein compare
Psest_1371 -0.8 -1.6 hypothetical protein compare
Psest_2850 -0.8 -0.8 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1082 -0.8 -1.1 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3736 -0.8 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_4132 -0.8 -1.9 alpha-ketoglutarate DNA-binding response regulator (mifR) (from data) compare
Psest_2138 -0.8 -1.7 RND family efflux transporter, MFP subunit compare
Psest_1686 -0.8 -1.8 fatty acid/phospholipid synthesis protein PlsX compare
Psest_4045 -0.8 -2.2 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen compare
Psest_3678 -0.8 -1.7 acyl-phosphate glycerol 3-phosphate acyltransferase compare
Psest_1026 -0.7 -1.8 Uncharacterized iron-regulated protein compare
Psest_1812 -0.7 -4.6 pseudaminic acid CMP-transferase compare
Psest_3744 -0.7 -2.6 Disulfide bond formation protein DsbB compare
Psest_4255 -0.7 -3.0 conserved hypothetical integral membrane protein compare
Psest_2811 -0.7 -3.4 Uncharacterized conserved protein compare
Psest_3287 -0.7 -3.1 Type II secretory pathway, component PulF compare
Psest_0508 -0.7 -3.4 gamma-glutamyl phosphate reductase compare
Psest_2848 -0.7 -1.2 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_3086 -0.7 -3.2 hypothetical protein compare
Psest_2887 -0.7 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_0031 -0.7 -1.0 Uncharacterized conserved protein compare
Psest_2705 -0.7 -3.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1103 -0.7 -1.3 GTP-binding protein YchF compare
Psest_1261 -0.7 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_0706 -0.7 -3.9 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_2764 -0.7 -0.7 hypothetical protein compare
Psest_2307 -0.7 -3.1 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_4256 -0.7 -1.3 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_2772 -0.7 -2.2 MIP family channel proteins compare
Psest_3236 -0.7 -1.5 hypothetical protein compare
Psest_0248 -0.7 -2.8 Transcriptional regulator compare
Psest_1259 -0.7 -2.3 23S rRNA m2A2503 methyltransferase compare
Psest_0489 -0.7 -0.9 phosphoserine phosphatase SerB compare
Psest_0704 -0.7 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_1994 -0.7 -1.4 Amidases related to nicotinamidase compare
Psest_3115 -0.7 -2.8 electron transport complex, RnfABCDGE type, D subunit compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in stress experiments

For stress Nickel (II) chloride hexahydrate across organisms