Experiment set17IT032 for Pseudomonas stutzeri RCH2

Compare to:

LB with Nickel (II) chloride hexahydrate 0.75 mM

200 most detrimental genes:

  gene name fitness t score description  
Psest_3995 +1.9 2.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0511 +1.4 2.3 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_3518 +1.3 1.1 Transcriptional regulators compare
Psest_3828 +1.3 2.3 zinc-binding alcohol dehydrogenase family protein compare
Psest_3565 +1.3 1.9 hypothetical protein compare
Psest_0097 +1.2 1.7 phosphonates metabolism transcriptional regulator PhnF compare
Psest_2520 +1.2 2.1 Predicted SAM-dependent methyltransferase compare
Psest_3047 +1.2 1.5 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_0260 +1.2 1.1 Cell division protein compare
Psest_0298 +1.2 3.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0575 +1.2 1.4 HrpA-like helicases compare
Psest_2265 +1.1 3.5 Outer membrane protein compare
Psest_3962 +1.1 2.0 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_3400 +1.1 1.6 Copper resistance protein D. compare
Psest_4049 +1.1 2.5 hypothetical protein compare
Psest_2405 +1.1 1.3 NAD-dependent protein deacetylases, SIR2 family compare
Psest_1139 +1.0 3.7 PAS domain S-box compare
Psest_3853 +1.0 1.7 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_2975 +1.0 2.4 tRNA_Arg_CCT compare
Psest_1643 +1.0 0.6 hypothetical protein compare
Psest_1884 +1.0 2.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0692 +1.0 1.9 rRNA methylase, putative, group 3 compare
Psest_3521 +1.0 2.5 H+/gluconate symporter and related permeases compare
Psest_1115 +0.9 2.0 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_2892 +0.9 1.7 Transcriptional regulator compare
Psest_1466 +0.9 2.0 transcriptional regulator, Spx/MgsR family compare
Psest_0529 +0.9 5.2 Putative Mg2+ and Co2+ transporter CorC compare
Psest_1498 +0.9 1.6 tol-pal system-associated acyl-CoA thioesterase compare
Psest_3136 +0.9 3.7 Putative Mg2+ and Co2+ transporter CorB compare
Psest_2047 +0.9 1.7 Signal transduction histidine kinase compare
Psest_1161 +0.9 1.1 E3 Ubiquitin ligase. compare
Psest_3013 +0.9 2.1 cobyrinic acid a,c-diamide synthase compare
Psest_0805 +0.9 1.6 hypothetical protein compare
Psest_4151 +0.9 1.3 Flagellar hook capping protein compare
Psest_1227 +0.9 1.6 Predicted SAM-dependent methyltransferase compare
Psest_2590 +0.9 1.0 3-isopropylmalate dehydratase, small subunit compare
Psest_0218 +0.9 2.1 Acyl-CoA hydrolase compare
Psest_2015 +0.9 2.6 Type II secretory pathway, component PulD compare
Psest_2911 +0.8 1.0 Protein of unknown function (DUF2945). compare
Psest_4052 +0.8 2.9 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_0652 +0.8 1.9 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_4201 +0.8 1.1 general secretion pathway protein F compare
Psest_1909 +0.8 2.2 Phosphohistidine phosphatase SixA compare
Psest_1551 +0.8 1.5 Integral membrane protein, interacts with FtsH compare
Psest_4103 +0.8 1.1 AraC-type DNA-binding domain-containing proteins compare
Psest_2853 +0.8 2.1 hypothetical protein compare
Psest_3743 +0.8 2.4 Regulator of sigma D compare
Psest_1540 +0.7 0.9 biotin-dependent carboxylase uncharacterized domain compare
Psest_0006 +0.7 1.7 alkyl hydroperoxide reductase, F subunit compare
Psest_1886 +0.7 2.1 Uncharacterized protein conserved in bacteria compare
Psest_1029 +0.7 1.5 Regulator of competence-specific genes compare
Psest_0193 +0.7 1.1 conserved hypothetical protein compare
Psest_2716 +0.7 1.2 ABC-type multidrug transport system, ATPase component compare
Psest_2652 +0.7 2.1 Protein of unknown function (DUF1653). compare
Psest_2796 +0.7 2.4 HNH endonuclease. compare
Psest_0367 +0.7 0.8 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_3554 +0.7 1.9 Uncharacterized protein conserved in bacteria compare
Psest_2122 +0.7 1.0 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3398 +0.7 2.2 large conductance mechanosensitive channel protein compare
Psest_2847 +0.7 2.4 Multisubunit Na+/H+ antiporter, MnhF subunit compare
Psest_0708 +0.7 0.8 outer membrane assembly lipoprotein YfiO compare
Psest_0799 +0.7 1.2 Uncharacterized protein involved in response to NO compare
Psest_4395 +0.7 3.3 hypothetical protein compare
Psest_4134 +0.7 1.1 Uncharacterized protein conserved in bacteria compare
Psest_0362 +0.7 1.5 TRAP-type C4-dicarboxylate transport system, small permease component compare
Psest_3803 +0.7 0.9 DNA repair protein radc compare
Psest_2358 +0.7 1.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2766 +0.7 0.8 hypothetical protein compare
Psest_3438 +0.7 2.7 Glutamate dehydrogenase/leucine dehydrogenase compare
Psest_2906 +0.7 1.4 tRNA_Thr_CGT compare
Psest_1840 +0.7 6.2 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_3522 +0.7 1.9 3-hydroxybutyrate dehydrogenase compare
Psest_1354 +0.7 1.5 Uncharacterized protein conserved in bacteria compare
Psest_1370 +0.7 1.5 hypothetical protein compare
Psest_0790 +0.6 1.1 Uncharacterized protein conserved in bacteria compare
Psest_3222 +0.6 1.7 Putative threonine efflux protein compare
Psest_3207 +0.6 1.9 HopJ type III effector protein. compare
Psest_1145 +0.6 1.7 Predicted methylated DNA-protein cysteine methyltransferase compare
Psest_0313 +0.6 1.9 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0279 +0.6 2.4 methionine biosynthesis protein MetW compare
Psest_3914 +0.6 2.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3478 +0.6 1.2 Cytochrome B561 compare
Psest_3021 +0.6 1.6 NAD-dependent protein deacetylases, SIR2 family compare
Psest_2165 +0.6 2.2 Cytochrome B561 compare
Psest_0093 +0.6 2.0 Uncharacterized enzyme of phosphonate metabolism compare
Psest_4278 +0.6 1.1 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_0016 +0.6 1.3 ectoine/hydroxyectoine ABC transporter, ATP-binding protein compare
Psest_1377 +0.6 2.2 hypothetical protein compare
Psest_2343 +0.6 1.7 Mg-dependent DNase compare
Psest_1383 +0.6 1.7 DNA topoisomerase III, bacteria and conjugative plasmid compare
Psest_3868 +0.6 2.2 Uncharacterized conserved protein compare
Psest_0161 +0.6 1.1 Membrane-bound metallopeptidase compare
Psest_2293 +0.6 0.6 hypothetical protein compare
Psest_0030 +0.6 0.9 Putative NADH-flavin reductase compare
Psest_1366 +0.6 0.8 hypothetical protein compare
Psest_4196 +0.6 1.2 Type II secretory pathway, component PulK compare
Psest_3069 +0.6 1.1 3-oxoadipate enol-lactonase compare
Psest_0060 +0.6 0.7 Predicted Fe-S protein compare
Psest_3295 +0.6 1.9 dinuclear metal center protein, YbgI/SA1388 family compare
Psest_1165 +0.6 2.1 Lysine efflux permease compare
Psest_3005 +0.6 1.6 Fructose-2,6-bisphosphatase compare
Psest_2647 +0.6 0.9 SOS-response cell division inhibitor, blocks FtsZ ring formation compare
Psest_2517 +0.6 1.5 hypothetical protein compare
Psest_2757 +0.6 0.6 hypothetical protein compare
Psest_2100 +0.6 2.4 Predicted acyltransferases compare
Psest_1889 +0.5 2.9 tryptophanyl-tRNA synthetase compare
Psest_1597 +0.5 1.2 Protein of unknown function (DUF2933). compare
Psest_0537 +0.5 1.0 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_3188 +0.5 1.1 hypothetical protein compare
Psest_0568 +0.5 1.2 pseudouridine synthase compare
Psest_1677 +0.5 0.8 Protein-tyrosine-phosphatase compare
Psest_0814 +0.5 0.8 MoxR-like ATPases compare
Psest_3250 +0.5 1.1 Rho termination factor, N-terminal domain. compare
Psest_2266 +0.5 0.9 hypothetical protein compare
Psest_2348 +0.5 1.3 urea carboxylase-associated protein 2 compare
Psest_2565 +0.5 0.8 Transcriptional regulator compare
Psest_4078 +0.5 0.9 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_1143 +0.5 2.1 Small-conductance mechanosensitive channel compare
Psest_2423 +0.5 1.8 Uncharacterized conserved protein compare
Psest_3117 +0.5 1.2 electron transport complex, RnfABCDGE type, E subunit compare
Psest_0503 +0.5 0.5 Acyl dehydratase compare
Psest_2442 +0.5 1.1 hypothetical protein compare
Psest_1916 +0.5 1.7 Uncharacterized protein conserved in bacteria compare
Psest_0632 +0.5 2.0 hypothetical protein compare
Psest_1954 +0.5 1.0 hypothetical protein compare
Psest_2768 +0.5 0.8 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_1231 +0.5 1.9 Na+/H+ antiporter NhaD and related arsenite permeases compare
Psest_1952 +0.5 1.7 hypothetical protein compare
Psest_0041 +0.5 1.2 Uncharacterized protein conserved in bacteria compare
Psest_4039 +0.5 2.4 putative toxin-antitoxin system antitoxin component, TIGR02293 family compare
Psest_4247 +0.5 1.3 Serine/threonine protein phosphatase compare
Psest_2882 +0.5 2.1 hypothetical protein compare
Psest_3206 +0.5 1.4 Uncharacterized protein conserved in bacteria compare
Psest_2304 +0.5 0.6 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_3519 +0.5 0.6 Uncharacterized conserved protein compare
Psest_3170 +0.5 1.3 molybdenum cofactor biosynthesis protein MoaC compare
Psest_2923 +0.5 1.2 hypothetical protein compare
Psest_3812 +0.5 0.8 Uncharacterized protein conserved in bacteria compare
Psest_2628 +0.5 1.2 Flp pilus assembly protein, protease CpaA compare
Psest_2480 +0.5 1.1 Methyl-accepting chemotaxis protein compare
Psest_2909 +0.5 1.1 hypothetical protein compare
Psest_0484 +0.5 1.7 hypothetical protein compare
Psest_2907 +0.5 0.5 Protein of unknown function (DUF3618). compare
Psest_2316 +0.5 2.9 phosphoenolpyruvate synthase compare
Psest_2678 +0.5 1.4 Predicted protein-disulfide isomerase compare
Psest_2090 +0.5 0.9 Protein of unknown function (DUF2970). compare
Psest_0788 +0.5 2.2 Uncharacterized conserved protein compare
Psest_3816 +0.5 0.6 DNA-directed RNA polymerase, omega subunit compare
Psest_4310 +0.5 0.6 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_4082 +0.5 1.2 hypothetical protein compare
Psest_0785 +0.5 1.8 Thioredoxin reductase compare
Psest_3896 +0.5 0.9 arsenite-activated ATPase ArsA compare
Psest_2630 +0.5 1.1 hypothetical protein compare
Psest_2500 +0.5 0.8 hypothetical protein compare
Psest_3470 +0.5 1.0 Uncharacterized conserved protein compare
Psest_1979 +0.5 1.0 Nucleotidyltransferase/DNA polymerase involved in DNA repair compare
Psest_4211 +0.5 1.1 conserverd hypothetical protein compare
Psest_2637 +0.5 0.7 putative methyltransferase, YaeB/AF_0241 family compare
Psest_2912 +0.5 1.7 Uncharacterized conserved protein compare
Psest_4199 +0.5 2.0 general secretion pathway protein H compare
Psest_1459 +0.5 1.7 hypothetical protein compare
Psest_3897 +0.5 2.3 Protein of unknown function (DUF2628). compare
Psest_4249 +0.5 1.8 Rhs element Vgr protein compare
Psest_1924 +0.5 3.6 adhesin-associated MmpL efflux pump (from data) compare
Psest_1018 +0.5 1.6 ribosomal protein L11 methyltransferase compare
Psest_1367 +0.5 1.3 hypothetical protein compare
Psest_2429 +0.5 1.6 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_3987 +0.5 1.5 Nitroreductase compare
Psest_3088 +0.5 1.4 Protein of unknown function (DUF2905). compare
Psest_0095 +0.5 0.9 phosphonate C-P lyase system protein PhnH compare
Psest_4319 +0.5 1.7 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily compare
Psest_1357 +0.5 1.0 Uncharacterized protein conserved in bacteria compare
Psest_2093 +0.5 1.5 Leucine Rich Repeat./Protein kinase domain. compare
Psest_1388 +0.5 0.7 Uncharacterized protein conserved in bacteria compare
Psest_1728 +0.5 1.5 Flagellar basal body-associated protein compare
Psest_4216 +0.5 1.4 hypothetical protein compare
Psest_0379 +0.5 1.0 Galactose mutarotase and related enzymes compare
Psest_3399 +0.5 0.6 Uncharacterized protein conserved in bacteria compare
Psest_3331 +0.5 1.5 rare lipoprotein A compare
Psest_1630 +0.5 2.3 Transcriptional regulator compare
Psest_2901 +0.5 0.7 hypothetical protein compare
Psest_4191 +0.4 1.2 Transcriptional regulator compare
Psest_3156 +0.4 1.5 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_0351 +0.4 1.3 hypothetical protein compare
Psest_1942 +0.4 2.3 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_1317 +0.4 1.4 phosphonate ABC transporter, permease protein PhnE compare
Psest_0079 +0.4 1.3 hypothetical protein compare
Psest_1001 +0.4 1.1 hypothetical protein compare
Psest_3700 +0.4 0.6 hypothetical protein compare
Psest_3072 +0.4 1.5 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit compare
Psest_2752 +0.4 1.4 Uncharacterized protein conserved in bacteria compare
Psest_0673 +0.4 1.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_0595 +0.4 1.6 Uncharacterized conserved protein compare
Psest_0066 +0.4 0.6 Protein of unknown function (DUF3060). compare
Psest_0482 +0.4 1.2 yqiA-like hydrolase, affects the cell envelope (from data) compare
Psest_4387 +0.4 1.6 hypothetical protein compare
Psest_2447 +0.4 1.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4043 +0.4 1.4 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_4325 +0.4 0.9 hypothetical protein compare
Psest_3202 +0.4 0.9 Flavodoxins compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in stress experiments

For stress Nickel (II) chloride hexahydrate across organisms