Experiment set17IT032 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

Post-colonization (Day 12) - Cage4;Mouse5

200 most important genes:

  gene name fitness t score description  
BT3821 -5.2 -7.1 5,10-methylenetetrahydrofolate reductase (NCBI ptt file) compare
BT1757 -4.9 -3.4 fructokinase (NCBI ptt file) compare
BT3688 -4.9 -3.4 putative acetyltransferase (NCBI ptt file) compare
BT3933 -4.9 -3.4 prephenate dehydrogenase (EC 1.3.1.13) (from data) compare
BT0892 -4.6 -2.9 dihydroorotate dehydrogenase (NCBI ptt file) compare
BT0353 -4.5 -3.1 putative sugar epimerase/aldolase (NCBI ptt file) compare
BT1607 -4.3 -2.9 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase (NCBI ptt file) compare
BT1843 -4.2 -2.9 adenylosuccinate synthetase (NCBI ptt file) compare
BT3320 -4.1 -2.9 dihydrodipicolinate reductase (NCBI ptt file) compare
p5482_02 -3.9 -4.7 hypothetical protein (NCBI) compare
BT1746 -3.8 -2.5 conserved hypothetical protein (NCBI ptt file) compare
BT4599 -3.8 -2.6 putative transcriptional regulator (NCBI ptt file) compare
BT2415 -3.8 -7.7 aspartate aminotransferase (NCBI ptt file) compare
BT1374 -3.7 -2.6 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BT3733 -3.7 -6.7 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
BT2396 -3.7 -2.6 putative membrane transporter involved in nicotinamide mononucleotide transport (NCBI ptt file) compare
BT3920 -3.6 -2.0 conserved hypothetical protein (NCBI ptt file) compare
BT2390 -3.6 -6.9 conserved hypothetical protein (NCBI ptt file) compare
BT3253 -3.6 -2.5 phosphoribosylamine--glycine ligase (NCBI ptt file) compare
BT0155 -3.5 -2.4 putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file) compare
BT0519 -3.4 -4.1 hypothetical protein (NCBI ptt file) compare
BT1953 -3.4 -3.3 putative TonB-linked outer membrane receptor (NCBI ptt file) compare
BT3395 -3.3 -6.3 N-succinylglutamate kinase (EC 2.7.2.-) (from data) compare
BT0146 -3.3 -3.2 unsaturated glucuronyl hydrolase (NCBI ptt file) compare
BT0891 -3.3 -2.3 dihydroorotate dehydrogenase electron transfer subunit (NCBI ptt file) compare
BT0555 -3.3 -2.2 amidophosphoribosyltransferase (NCBI ptt file) compare
BT0180 -3.2 -5.4 5-methyltetrahydrofolate-homocysteine methyltransferase (NCBI ptt file) compare
BT1081 -3.2 -2.2 recombination protein recR (NCBI ptt file) compare
BT2167 -3.2 -6.1 elongation factor G (NCBI ptt file) compare
BT0700 -3.2 -2.2 GTP pyrophosphokinase (NCBI ptt file) compare
BT3894 -3.1 -4.3 putative methyltransferase (NCBI ptt file) compare
BT4255 -3.1 -3.7 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) compare
BT2798 -3.1 -15.2 carboxy-terminal processing protease precursor (NCBI ptt file) compare
BT1733 -3.1 -2.1 putative phosphoribosylformylglycinamidine synthase (NCBI ptt file) compare
BT1956 -3.1 -2.1 putative cell surface protein (NCBI ptt file) compare
BT3758 -3.1 -3.0 N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) compare
BT0547 -3.1 -2.1 aspartate aminotransferase (NCBI ptt file) compare
BT2403 -3.0 -10.0 aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) (from data) compare
BT1957 -3.0 -6.7 hypothetical protein (NCBI ptt file) compare
BT3936 -3.0 -2.1 prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data) compare
BT4720 -3.0 -2.1 putative RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT1536 -3.0 -2.9 ABC transporter permease (NCBI ptt file) compare
BT1339 -2.9 -3.5 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase (NCBI ptt file) compare
BT3712 -2.9 -3.5 ribosomal large subunit pseudouridine synthase D (NCBI ptt file) compare
BT0557 -2.9 -6.2 carbamyl phosphate synthetase (NCBI ptt file) compare
BT3462 -2.9 -2.0 TPR domain protein (NCBI ptt file) compare
BT3759 -2.9 -8.7 N-succinylglutamylphosphate reductase (EC 1.2.1.-) (from data) compare
BT1375 -2.9 -2.0 aspartokinase (NCBI ptt file) compare
BT4211 -2.9 -2.0 putative phosphoribosylformylglycinamidine cyclo-ligase (NCBI ptt file) compare
BT2386 -2.9 -6.7 AsnC family transcriptional regulator (NCBI ptt file) compare
BT2040 -2.9 -6.1 hypothetical protein (NCBI ptt file) compare
BT1068 -2.9 -3.4 hypothetical protein (NCBI ptt file) compare
BT4174 -2.9 -3.9 conserved hypothetical protein (NCBI ptt file) compare
BT2413 -2.8 -8.1 homoserine O-succinyltransferase (NCBI ptt file) compare
BT1270 -2.8 -3.3 putative Na+/H+ antiporter (NCBI ptt file) compare
BT4667 -2.8 -5.9 beta-galactosidase (NCBI ptt file) compare
BT_2008 -2.8 -1.8 hypothetical protein (RefSeq) compare
BT1758 -2.7 -3.2 fructose transporter (from data) compare
BT1747 -2.7 -1.9 pyruvate-flavodoxin oxidoreductase (NCBI ptt file) compare
BT3549 -2.7 -5.5 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
BT3072 -2.7 -3.7 collagenase precursor (NCBI ptt file) compare
BT3839 -2.7 -1.8 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT3232 -2.6 -1.8 gluconate 5-dehydrogenase (NCBI ptt file) compare
BT0350 -2.6 -4.4 ribulokinase (EC 2.7.1.16) (from data) compare
BT3843 -2.6 -4.0 ATP-dependent Clp protease ATP-binding subunit (NCBI ptt file) compare
BT3761 -2.6 -5.1 N-succinylglutamate synthase (from data) compare
BT4658 -2.6 -3.0 glucuronyl hydrolase (NCBI ptt file) compare
BT2945 -2.6 -5.9 UDP-N-acetyl-D-mannosamine dehydrogenase (NCBI ptt file) compare
BT3760 -2.6 -5.7 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
BT3717 -2.6 -3.9 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) compare
BT4191 -2.5 -1.8 hypothetical protein (NCBI ptt file) compare
BT2074 -2.5 -9.6 ketol-acid reductoisomerase (NCBI ptt file) compare
BT0370 -2.5 -1.7 galactokinase (NCBI ptt file) compare
BT2387 -2.5 -8.1 O-acetylhomoserine (thiol)-lyase (NCBI ptt file) compare
BT1954 -2.5 -3.0 putative surface layer protein (NCBI ptt file) compare
BT3337 -2.5 -8.2 RND efflux system, outer membrane component BipA (from data) compare
BT2944 -2.5 -4.4 putative UDP-N-acetylglucosamine 2-epimerase (NCBI ptt file) compare
BT1955 -2.5 -4.1 putative cell wall biogenesis protein (NCBI ptt file) compare
BT1222 -2.5 -1.7 6-phosphogluconate dehydrogenase,decarboxylating (NCBI ptt file) compare
BT0527 -2.5 -3.7 tryptophan synthase alpha chain (NCBI ptt file) compare
BT3935 -2.5 -2.9 aminotransferase (NCBI ptt file) compare
BT0875 -2.4 -4.3 beta-ureidopropionase (NCBI ptt file) compare
BT2938 -2.4 -2.4 putative glycosyltransferase (NCBI ptt file) compare
BT1859 -2.4 -4.3 3-isopropylmalate dehydratase small subunit (NCBI ptt file) compare
BT0156 -2.4 -1.6 transcriptional regulator (NCBI ptt file) compare
BT2146 -2.4 -8.3 4-alpha-glucanotransferase (NCBI ptt file) compare
BT4265 -2.4 -1.6 GMP synthase (glutamine-hydrolyzing) (NCBI ptt file) compare
BT4644 -2.4 -1.6 putative anti-sigma factor (NCBI ptt file) compare
BT0556 -2.4 -1.6 carbamoyl phosphate synthetase III (glutamine-hydrolyzing) (NCBI ptt file) compare
BT4195 -2.3 -2.3 conserved hypothetical protein (NCBI ptt file) compare
BT1082 -2.3 -9.4 Na+/solute symporter (NCBI ptt file) compare
BT0351 -2.3 -3.2 L-arabinose isomerase (NCBI ptt file) compare
BT1343 -2.3 -1.6 putative capsule biosynthesis protein (NCBI ptt file) compare
BT0771 -2.3 -1.6 1,4-alpha-glucan branching enzyme (isoamylase or pullulanase type II) (NCBI ptt file) compare
BT4551 -2.3 -1.6 putative GTPase, ThdF family (NCBI ptt file) compare
BT0728 -2.3 -2.7 transcriptional regulator (NCBI ptt file) compare
BT1355 -2.3 -4.8 hypothetical protein (NCBI ptt file) compare
BT0876 -2.3 -1.5 conserved hypothetical protein (NCBI ptt file) compare
BT1342 -2.3 -4.5 putative UDP-glucuronic acid epimerase (NCBI ptt file) compare
BT1558 -2.2 -3.4 hypothetical protein (NCBI ptt file) compare
BT1857 -2.2 -6.5 3-isopropylmalate dehydrogenase (NCBI ptt file) compare
BT4723 -2.2 -2.2 putative anti-sigma factor (NCBI ptt file) compare
BT0617 -2.2 -1.5 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfB (NCBI ptt file) compare
BT0258 -2.2 -8.1 glucosamine-6-phosphate isomerase (NCBI ptt file) compare
BT0572 -2.2 -2.1 conserved hypothetical protein (NCBI ptt file) compare
BT0187 -2.2 -3.3 conserved hypothetical protein (NCBI ptt file) compare
BT4416 -2.2 -2.6 Cu2+ homeostasis protein CutC (NCBI ptt file) compare
BT4610 -2.2 -1.5 RecA (NCBI ptt file) compare
BT1354 -2.2 -2.6 putative flippase (NCBI ptt file) compare
BT2302 -2.2 -1.2 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT3195 -2.2 -2.6 conserved hypothetical protein (NCBI ptt file) compare
BT1564 -2.2 -1.5 conserved hypothetical protein (NCBI ptt file) compare
BT0177 -2.2 -2.1 hypothetical protein (NCBI ptt file) compare
BT4322 -2.2 -1.5 conserved hypothetical protein, with a diacylglycerol kinase catalytic domain (NCBI ptt file) compare
BT2090 -2.1 -7.3 methylmalonyl-CoA mutase large subunit (NCBI ptt file) compare
BT0352 -2.1 -1.5 conserved hypothetical protein (NCBI ptt file) compare
BT1952 -2.1 -6.0 Fe3+ ABC transporter, periplasmic iron-binding protein (NCBI ptt file) compare
BT1871 -2.1 -8.4 putative alpha-glucosidase (NCBI ptt file) compare
BT0548 -2.1 -1.4 diaminopimelate epimerase (NCBI ptt file) compare
BT1524 -2.1 -2.0 hypothetical protein (NCBI ptt file) compare
BT1439 -2.1 -8.1 Outer membrane binding protein for vancomycin (SusD-like) (from data) compare
BT3819 -2.1 -2.0 conserved hypothetical protein (NCBI ptt file) compare
BT1340 -2.1 -2.0 putative lipopolysaccharide biosynthesis glycosyltransferase (NCBI ptt file) compare
BT0122 -2.1 -3.1 3-oxoacyl-[acyl-carrier-protein] synthase III (NCBI ptt file) compare
BT4305 -2.1 -8.4 putative alpha-amylase (NCBI ptt file) compare
BT0249 -2.0 -1.4 5-methyltetrahydrofolate--homocysteine methyltransferase or methionine synthase (NCBI ptt file) compare
BT1346 -2.0 -1.9 capsule biosynthesis protein capA (NCBI ptt file) compare
BT4041 -2.0 -3.8 conserved hypothetical protein (NCBI ptt file) compare
BT3431 -2.0 -5.2 DNA repair protein (NCBI ptt file) compare
BT4649 -2.0 -1.3 hypothetical protein (NCBI ptt file) compare
BT1979 -2.0 -3.0 Meso-diaminopimelate D-dehydrogenase (NCBI ptt file) compare
BT3260 -2.0 -1.4 DNA polymerase I (NCBI ptt file) compare
BT1221 -2.0 -1.9 glucose-6-phosphate 1-dehydrogenase (NCBI ptt file) compare
BT3223 -2.0 -1.9 hypothetical protein (NCBI ptt file) compare
BT4303 -2.0 -11.4 glycogen debranching enzyme-related protein (4-alpha-glucanotransferase) (NCBI ptt file) compare
BT0356 -2.0 -2.7 aldose 1-epimerase precursor (NCBI ptt file) compare
BT1844 -1.9 -4.1 transcriptional regulator, putative iron uptake regulation protein (NCBI ptt file) compare
BT1854 -1.9 -1.3 putative membrane-associated phospholipid phosphatase (NCBI ptt file) compare
BT0811 -1.9 -4.0 putative tRNA/rRNA methyltransferase (NCBI ptt file) compare
BT4239 -1.9 -6.5 hypothetical protein (NCBI ptt file) compare
BT1759 -1.9 -2.9 levanase precursor (2,6-beta-D-fructofuranosidase) (NCBI ptt file) compare
BT0621 -1.9 -1.8 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfE (NCBI ptt file) compare
BT4304 -1.9 -9.0 putative glycosyltransferase (NCBI ptt file) compare
BT2153 -1.9 -1.8 putative Fe-S oxidoreductases (NCBI ptt file) compare
BT1350 -1.9 -1.9 CDP-glucose 4,6-dehydratase (NCBI ptt file) compare
BT3342 -1.9 -2.2 hypothetical protein (NCBI ptt file) compare
BT3762 -1.9 -4.3 arginine repressor, transcriptional regulator of arginine metabolism (NCBI ptt file) compare
BT3220 -1.9 -6.0 TPR-repeat-containing protein (NCBI ptt file) compare
BT1352 -1.9 -2.8 putative glycosyltransferase HI1698 (NCBI ptt file) compare
BT0355 -1.9 -4.1 L-arabinose/L-arabinobiose symporter (from data) compare
BT0163 -1.9 -3.9 conserved hypothetical protein (NCBI ptt file) compare
BT1530 -1.9 -2.8 putative outer membrane protein OprM precursor (NCBI ptt file) compare
BT2899 -1.9 -11.0 hypothetical protein (NCBI ptt file) compare
BT2185 -1.8 -2.2 hypothetical protein (NCBI ptt file) compare
BT1293 -1.8 -10.6 alpha-glucan phosphorylase (NCBI ptt file) compare
BT1358 -1.8 -1.8 putative transcriptional regulator (NCBI ptt file) compare
BT3481 -1.8 -2.1 putative glutaminase A (NCBI ptt file) compare
BT4049 -1.8 -3.9 putative ArgK protein with ATPase and kinase domains (NCBI ptt file) compare
BT3550 -1.8 -3.7 putative long-chain-fatty-acid--CoA ligase (NCBI ptt file) compare
BT2418 -1.8 -3.6 hypothetical protein (NCBI ptt file) compare
BT2977 -1.8 -9.1 peptidylprolyl isomerase (NCBI ptt file) compare
BT1860 -1.8 -4.3 3-isopropylmalate dehydratase large subunit (NCBI ptt file) compare
BT0543 -1.8 -3.7 glutamine synthetase (NCBI ptt file) compare
BT0546 -1.8 -2.9 conserved hypothetical protein (NCBI ptt file) compare
BT1613 -1.8 -4.2 conserved hypothetical protein (NCBI ptt file) compare
BT1951 -1.8 -2.0 Fe3+ ABC transporter, permease protein (NCBI ptt file) compare
BT1916 -1.8 -5.0 conserved hypothetical protein (NCBI ptt file) compare
BT1946 -1.7 -2.6 hypothetical protein (NCBI ptt file) compare
BT1316 -1.7 -2.0 putative NADH dehydrogenase/NAD(P)H nitroreductase (NCBI ptt file) compare
BT2049 -1.7 -1.7 transcriptional regulator (NCBI ptt file) compare
BT3801 -1.7 -2.8 rteB, two-component system response regulator (NCBI ptt file) compare
BT4341 -1.7 -5.5 hypothetical protein (NCBI ptt file) compare
BT4570 -1.7 -4.0 hypothetical protein (NCBI ptt file) compare
BT4193 -1.7 -7.2 dipeptidyl peptidase IV (NCBI ptt file) compare
BT0578 -1.7 -4.6 excinuclease ABC subunit A (NCBI ptt file) compare
BT1754 -1.7 -7.6 two-component system sensor histidine kinase/response regulator, hybrid ('one component system') (NCBI ptt file) compare
BT0833 -1.7 -2.0 conserved hypothetical protein (NCBI ptt file) compare
BT0730 -1.7 -2.8 putative mRNA-binding protein (NCBI ptt file) compare
BT2062 -1.7 -7.2 6-phosphofructokinase (NCBI ptt file) compare
BT4349 -1.7 -2.2 hypothetical protein (NCBI ptt file) compare
BT3363 -1.7 -1.1 lipopolysaccharide core biosynthesis protein LpsA (NCBI ptt file) compare
BT1010 -1.6 -5.2 conserved hypothetical protein (NCBI ptt file) compare
BT2091 -1.6 -5.6 methylmalonyl-CoA mutase small subunit (NCBI ptt file) compare
BT3022 -1.6 -1.6 hypothetical protein (NCBI ptt file) compare
BT1345 -1.6 -1.1 glycosyltransferase (NCBI ptt file) compare
BT3689 -1.6 -4.7 conserved hypothetical protein (NCBI ptt file) compare
BT0973 -1.6 -2.6 hypothetical protein (NCBI ptt file) compare
BT3655 -1.6 -5.2 arabinosidase (NCBI ptt file) compare
BT2487 -1.6 -1.7 hypothetical protein (NCBI ptt file) compare
BT2145 -1.6 -7.3 ribonucleoside-diphosphate reductase alpha chain (NCBI ptt file) compare
BT1729 -1.6 -6.5 peptide chain release factor 3 (RF-3) (NCBI ptt file) compare
BT2467 -1.6 -3.2 hypothetical protein (NCBI ptt file) compare
BT0570 -1.6 -3.9 excinuclease ABC subunit B (NCBI ptt file) compare
BT3981 -1.5 -1.0 hypothetical protein (NCBI ptt file) compare
BT0553 -1.5 -7.7 glutamate synthase, large subunit (NCBI ptt file) compare
BT0647 -1.5 -1.8 thiamine phosphate pyrophosphorylase (NCBI ptt file) compare
BT2077 -1.5 -7.3 acetolactate synthase large subunit (NCBI ptt file) compare
BT3338 -1.5 -8.6 RND efflux system, inner membrane component BipB (from data) compare
BT1344 -1.5 -3.5 putative glycosyltransferase (NCBI ptt file) compare
BT2843 -1.5 -1.8 integrase (NCBI ptt file) compare


Specific Phenotypes

For 3 genes in this experiment