Experiment set17IT031 for Pseudomonas stutzeri RCH2

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
Psest_1999 -3.6 -1.6 pseudouridine synthase compare
Psest_1496 -3.0 -1.8 Holliday junction DNA helicase, RuvA subunit compare
Psest_3546 -2.8 -1.4 Phosphatidylglycerophosphatase A and related proteins compare
Psest_0725 -2.8 -2.5 Negative regulator of beta-lactamase expression compare
Psest_0066 -2.7 -2.4 Protein of unknown function (DUF3060). compare
Psest_4219 -2.7 -3.6 DNA polymerase I compare
Psest_3766 -2.7 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_3247 -2.4 -2.0 Uncharacterized membrane protein compare
Psest_0845 -2.4 -1.0 hypothetical protein compare
Psest_0028 -2.3 -6.0 Coproporphyrinogen III oxidase compare
Psest_1602 -2.3 -2.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3767 -2.2 -4.8 tyrosine recombinase XerC compare
Psest_1824 -2.1 -3.5 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_0487 -2.1 -3.5 Uncharacterized protein conserved in bacteria compare
Psest_1179 -2.0 -1.8 2-hydroxy-3-oxopropionate reductase compare
Psest_1313 -2.0 -1.4 Uncharacterized conserved small protein compare
Psest_3129 -1.9 -1.3 tyrosine recombinase XerD compare
Psest_2120 -1.8 -2.7 Transcriptional regulator compare
Psest_2579 -1.8 -5.4 amidophosphoribosyltransferase compare
Psest_1805 -1.7 -1.6 integration host factor, beta subunit compare
Psest_2646 -1.7 -2.2 SOS regulatory protein LexA compare
Psest_1782 -1.7 -2.2 Predicted transcriptional regulators compare
Psest_1012 -1.7 -4.5 Signal transduction histidine kinase compare
Psest_0309 -1.7 -1.3 RND family efflux transporter, MFP subunit compare
Psest_0193 -1.6 -1.4 conserved hypothetical protein compare
Psest_1595 -1.6 -1.2 Copper chaperone compare
Psest_4325 -1.6 -1.9 hypothetical protein compare
Psest_2975 -1.6 -2.2 tRNA_Arg_CCT compare
Psest_2613 -1.6 -1.4 hypothetical protein compare
Psest_2946 -1.6 -2.7 septum site-determining protein MinD compare
Psest_0442 -1.6 -2.6 ATPases of the AAA+ class compare
Psest_4078 -1.6 -2.2 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_2308 -1.6 -1.0 Predicted Fe-S protein compare
Psest_4303 -1.5 -1.8 HEAT repeat. compare
Psest_4044 -1.5 -1.4 type I site-specific deoxyribonuclease, HsdR family compare
Psest_4307 -1.4 -2.5 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_0999 -1.4 -1.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3100 -1.4 -1.0 RNA polymerase sigma factor RpoE compare
Psest_2872 -1.4 -1.7 protein RecA compare
Psest_3531 -1.4 -1.1 Peptidase propeptide and YPEB domain. compare
Psest_3745 -1.4 -3.3 Uncharacterized enzyme of heme biosynthesis compare
Psest_3112 -1.4 -2.8 electron transport complex, RnfABCDGE type, A subunit compare
Psest_0515 -1.4 -3.4 rare lipoprotein A compare
Psest_0872 -1.4 -1.1 Helix-turn-helix. compare
Psest_0740 -1.4 -2.0 Transcriptional regulator compare
Psest_1659 -1.4 -2.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0417 -1.3 -2.1 Acyl-CoA dehydrogenases compare
Psest_2775 -1.3 -3.0 Glycerol-3-phosphate dehydrogenase compare
Psest_2945 -1.3 -1.1 septum site-determining protein MinC compare
Psest_0013 -1.3 -4.3 Lauroyl/myristoyl acyltransferase compare
Psest_0237 -1.3 -3.1 intracellular protease, PfpI family compare
Psest_1661 -1.3 -1.5 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0367 -1.3 -2.0 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_2894 -1.3 -2.1 addiction module antidote protein, HigA family compare
Psest_3231 -1.3 -2.0 hypothetical protein compare
Psest_1471 -1.3 -3.3 Predicted membrane protein compare
Psest_0212 -1.2 -1.8 exodeoxyribonuclease V, gamma subunit compare
Psest_3860 -1.2 -1.8 Predicted permeases compare
Psest_1717 -1.2 -3.5 benzoate transporter compare
Psest_3816 -1.2 -0.9 DNA-directed RNA polymerase, omega subunit compare
Psest_1295 -1.2 -4.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1013 -1.2 -2.7 phosphoribosylamine--glycine ligase compare
Psest_3017 -1.2 -4.3 Predicted phosphohydrolases compare
Psest_1804 -1.2 -1.7 Superfamily II DNA and RNA helicases compare
Psest_3042 -1.1 -1.0 Nitrate reductase cytochrome c-type subunit compare
Psest_1704 -1.1 -1.0 Dehydrogenases (flavoproteins) compare
Psest_1167 -1.1 -0.8 hypothetical protein compare
Psest_1888 -1.1 -0.8 Sua5/YciO/YrdC/YwlC family protein compare
Psest_4338 -1.1 -3.1 Fe2+-dicitrate sensor, membrane component compare
Psest_2530 -1.1 -3.5 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_2911 -1.1 -1.2 Protein of unknown function (DUF2945). compare
Psest_1259 -1.1 -3.5 23S rRNA m2A2503 methyltransferase compare
Psest_3400 -1.1 -1.0 Copper resistance protein D. compare
Psest_3212 -1.1 -2.7 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_4256 -1.1 -1.8 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_4003 -1.1 -4.1 TIGR00153 family protein compare
Psest_1601 -1.1 -1.4 Signal transduction histidine kinase compare
Psest_1657 -1.1 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1656 -1.1 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_4098 -1.1 -2.6 Superfamily I DNA and RNA helicases compare
Psest_4095 -1.1 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_3338 -1.1 -1.1 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2899 -1.1 -1.1 hypothetical protein compare
Psest_1230 -1.1 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_3351 -1.1 -4.0 peptide chain release factor 3 compare
Psest_2513 -1.1 -1.9 Predicted membrane protein compare
Psest_2285 -1.0 -2.6 ATP-dependent protease La compare
Psest_2591 -1.0 -1.6 3-isopropylmalate dehydratase, large subunit compare
Psest_0844 -1.0 -2.4 High-affinity Fe2+/Pb2+ permease compare
Psest_4335 -1.0 -1.8 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_1008 -1.0 -0.8 hypothetical protein compare
Psest_0165 -1.0 -2.3 protein-export chaperone SecB compare
Psest_2266 -1.0 -1.8 hypothetical protein compare
Psest_0958 -1.0 -4.0 Oligoketide cyclase/lipid transport protein compare
Psest_4196 -1.0 -2.3 Type II secretory pathway, component PulK compare
Psest_1176 -1.0 -2.1 Urea transporter compare
Psest_3181 -1.0 -4.3 Predicted membrane protein/domain compare
Psest_2446 -1.0 -1.6 acetyl-CoA acetyltransferases compare
Psest_1162 -1.0 -1.0 Spermidine synthase compare
Psest_3810 -1.0 -0.7 orotate phosphoribosyltransferase compare
Psest_4396 -1.0 -5.3 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_1381 -1.0 -2.5 Predicted alpha/beta hydrolase compare
Psest_1065 -1.0 -1.1 hypothetical protein compare
Psest_1366 -1.0 -1.0 hypothetical protein compare
Psest_2885 -1.0 -1.8 Acyl carrier protein compare
Psest_0079 -1.0 -2.8 hypothetical protein compare
Psest_0021 -1.0 -2.5 ribosomal RNA small subunit methyltransferase RsmB compare
Psest_3421 -1.0 -2.6 hypothetical protein compare
Psest_3155 -1.0 -1.8 hypothetical protein compare
Psest_4274 -1.0 -1.7 hypothetical protein compare
Psest_3115 -1.0 -3.7 electron transport complex, RnfABCDGE type, D subunit compare
Psest_0660 -0.9 -1.7 Methyl-accepting chemotaxis protein compare
Psest_3159 -0.9 -3.5 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_4343 -0.9 -1.8 Protein of unknown function (DUF3301). compare
Psest_4049 -0.9 -1.2 hypothetical protein compare
Psest_0869 -0.9 -2.0 Acetyltransferase (isoleucine patch superfamily) compare
Psest_3188 -0.9 -2.3 hypothetical protein compare
Psest_3691 -0.9 -4.0 Predicted membrane protein compare
Psest_2711 -0.9 -1.2 PilZ domain. compare
Psest_3270 -0.9 -1.3 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_2018 -0.9 -1.3 Uncharacterized conserved protein compare
Psest_1103 -0.9 -1.7 GTP-binding protein YchF compare
Psest_0959 -0.9 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_4128 -0.9 -1.0 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_0737 -0.9 -0.6 Cu(I)-responsive transcriptional regulator compare
Psest_0759 -0.9 -1.0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_0503 -0.9 -0.9 Acyl dehydratase compare
Psest_1306 -0.9 -1.1 hypothetical protein compare
Psest_2772 -0.9 -2.7 MIP family channel proteins compare
Psest_0520 -0.9 -0.5 hypothetical protein compare
Psest_2850 -0.9 -0.8 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1160 -0.9 -2.4 Uncharacterized conserved protein compare
Psest_3793 -0.9 -4.1 D-alanine dehydrogenase (EC 1.4.99.-) (from data) compare
Psest_0998 -0.9 -1.7 poly(A) polymerase compare
Psest_0718 -0.9 -2.2 nicotinate-nucleotide pyrophosphorylase compare
Psest_3780 -0.9 -1.7 Transcriptional regulator compare
Psest_3550 -0.9 -1.3 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_0133 -0.9 -1.0 type VI secretion protein, VC_A0107 family compare
Psest_1663 -0.9 -1.7 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_1762 -0.8 -1.3 cytochrome c-type biogenesis protein CcmI compare
Psest_2773 -0.8 -3.5 glycerol kinase compare
Psest_0504 -0.8 -2.5 Putative effector of murein hydrolase LrgA compare
Psest_0919 -0.8 -1.1 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_1322 -0.8 -1.3 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_0969 -0.8 -1.3 transcription elongation factor GreA compare
Psest_0717 -0.8 -6.2 Protein of unknown function (DUF1631). compare
Psest_3554 -0.8 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_1947 -0.8 -0.6 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2084 -0.8 -2.6 Fructose-2,6-bisphosphatase compare
Psest_1199 -0.8 -2.7 OHCU decarboxylase compare
Psest_3458 -0.8 -1.5 hypothetical protein compare
Psest_0218 -0.8 -1.7 Acyl-CoA hydrolase compare
Psest_3692 -0.8 -2.0 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_2025 -0.8 -0.5 cold shock domain protein CspD compare
Psest_3008 -0.8 -1.6 cobyric acid synthase CobQ compare
Psest_0357 -0.8 -1.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2557 -0.8 -1.3 Protein of unknown function (DUF2474). compare
Psest_0485 -0.8 -1.3 clan AA aspartic protease, TIGR02281 family compare
Psest_3413 -0.8 -1.9 hypothetical protein compare
Psest_0186 -0.8 -1.8 Protein-disulfide isomerase compare
Psest_2651 -0.8 -2.0 DNA topoisomerase I, bacterial compare
Psest_2973 -0.8 -3.0 Flagellar biosynthesis/type III secretory pathway chaperone compare
Psest_1025 -0.8 -2.8 ABC-type hemin transport system, ATPase component compare
Psest_1510 -0.8 -1.8 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0020 -0.8 -1.9 K+ transport systems, NAD-binding component compare
Psest_1568 -0.7 -2.3 hypothetical protein compare
Psest_3180 -0.7 -3.7 Exonuclease I compare
Psest_4008 -0.7 -4.7 PAS domain S-box compare
Psest_4045 -0.7 -2.6 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen compare
Psest_0061 -0.7 -1.4 hypothetical protein compare
Psest_3222 -0.7 -1.3 Putative threonine efflux protein compare
Psest_3301 -0.7 -1.1 Predicted transcriptional regulator, BolA superfamily compare
Psest_2605 -0.7 -1.2 transcriptional activator RfaH compare
Psest_1594 -0.7 -2.2 Predicted metal-binding protein compare
Psest_0514 -0.7 -2.3 lytic murein transglycosylase B compare
Psest_1837 -0.7 -2.3 Endoglucanase compare
Psest_1860 -0.7 -1.3 Uncharacterized conserved protein compare
Psest_2384 -0.7 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_0992 -0.7 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_3399 -0.7 -0.6 Uncharacterized protein conserved in bacteria compare
Psest_2853 -0.7 -2.1 hypothetical protein compare
Psest_0155 -0.7 -1.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3960 -0.7 -0.6 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_4184 -0.7 -2.1 hypothetical protein compare
Psest_3842 -0.7 -2.3 Transcriptional regulators compare
Psest_0334 -0.7 -1.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3495 -0.7 -2.8 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_2238 -0.7 -1.0 hypothetical protein compare
Psest_0499 -0.7 -2.3 hypothetical protein compare
Psest_0716 -0.7 -1.3 Protein of unknown function (DUF3094). compare
Psest_1574 -0.7 -0.9 phenazine biosynthesis protein PhzF family compare
Psest_2744 -0.7 -0.8 Uncharacterized conserved protein compare
Psest_0511 -0.7 -0.7 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_0697 -0.7 -1.6 ribosomal protein L9 compare
Psest_2304 -0.7 -0.6 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1960 -0.7 -1.4 Bacterial protein of unknown function (DUF903). compare
Psest_3905 -0.7 -2.1 formate dehydrogenase, alpha subunit, archaeal-type compare
Psest_0263 -0.7 -2.6 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0843 -0.7 -3.9 hypothetical protein compare
Psest_0410 -0.7 -1.9 Predicted amidophosphoribosyltransferases compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in lb experiments