Experiment set17IT031 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

Post-colonization (Day 12) - Cage3;Mouse3

200 most important genes:

  gene name fitness t score description  
BT3821 -5.2 -9.3 5,10-methylenetetrahydrofolate reductase (NCBI ptt file) compare
BT3933 -5.1 -4.9 prephenate dehydrogenase (EC 1.3.1.13) (from data) compare
BT0892 -4.9 -3.3 dihydroorotate dehydrogenase (NCBI ptt file) compare
BT1607 -4.7 -3.2 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase (NCBI ptt file) compare
BT1843 -4.5 -3.1 adenylosuccinate synthetase (NCBI ptt file) compare
BT3320 -4.3 -4.2 dihydrodipicolinate reductase (NCBI ptt file) compare
BT3688 -4.3 -7.6 putative acetyltransferase (NCBI ptt file) compare
BT1374 -4.1 -2.9 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BT2396 -4.1 -2.8 putative membrane transporter involved in nicotinamide mononucleotide transport (NCBI ptt file) compare
BT3894 -4.0 -2.8 putative methyltransferase (NCBI ptt file) compare
BT0155 -4.0 -2.8 putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file) compare
BT3253 -4.0 -2.7 phosphoribosylamine--glycine ligase (NCBI ptt file) compare
BT3733 -3.9 -10.5 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
BT1757 -3.9 -5.2 fructokinase (NCBI ptt file) compare
p5482_02 -3.9 -5.7 hypothetical protein (NCBI) compare
BT1953 -3.8 -2.6 putative TonB-linked outer membrane receptor (NCBI ptt file) compare
BT2798 -3.6 -15.8 carboxy-terminal processing protease precursor (NCBI ptt file) compare
BT0700 -3.5 -2.4 GTP pyrophosphokinase (NCBI ptt file) compare
BT0353 -3.5 -6.5 putative sugar epimerase/aldolase (NCBI ptt file) compare
BT3712 -3.5 -4.7 ribosomal large subunit pseudouridine synthase D (NCBI ptt file) compare
BT3717 -3.4 -4.1 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) compare
BT0180 -3.4 -6.6 5-methyltetrahydrofolate-homocysteine methyltransferase (NCBI ptt file) compare
BT1733 -3.4 -2.4 putative phosphoribosylformylglycinamidine synthase (NCBI ptt file) compare
BT0555 -3.4 -4.7 amidophosphoribosyltransferase (NCBI ptt file) compare
BT3936 -3.4 -2.3 prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data) compare
BT1758 -3.4 -2.3 fructose transporter (from data) compare
BT2403 -3.3 -11.3 aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) (from data) compare
BT4211 -3.3 -2.3 putative phosphoribosylformylglycinamidine cyclo-ligase (NCBI ptt file) compare
BT0547 -3.3 -3.9 aspartate aminotransferase (NCBI ptt file) compare
BT1270 -3.2 -3.1 putative Na+/H+ antiporter (NCBI ptt file) compare
BT0146 -3.2 -6.8 unsaturated glucuronyl hydrolase (NCBI ptt file) compare
BT0527 -3.2 -3.1 tryptophan synthase alpha chain (NCBI ptt file) compare
BT2386 -3.2 -7.9 AsnC family transcriptional regulator (NCBI ptt file) compare
BT1857 -3.2 -6.7 3-isopropylmalate dehydrogenase (NCBI ptt file) compare
BT1375 -3.2 -3.8 aspartokinase (NCBI ptt file) compare
BT3072 -3.1 -3.7 collagenase precursor (NCBI ptt file) compare
BT2438 -3.1 -6.3 hypothetical protein (NCBI ptt file) compare
BT1954 -3.1 -3.0 putative surface layer protein (NCBI ptt file) compare
BT1747 -3.1 -2.1 pyruvate-flavodoxin oxidoreductase (NCBI ptt file) compare
BT0557 -3.0 -9.8 carbamyl phosphate synthetase (NCBI ptt file) compare
BT4174 -3.0 -5.3 conserved hypothetical protein (NCBI ptt file) compare
BT2167 -2.9 -11.4 elongation factor G (NCBI ptt file) compare
BT1957 -2.9 -7.0 hypothetical protein (NCBI ptt file) compare
BT3550 -2.9 -3.9 putative long-chain-fatty-acid--CoA ligase (NCBI ptt file) compare
BT0370 -2.9 -3.4 galactokinase (NCBI ptt file) compare
BT0891 -2.9 -3.3 dihydroorotate dehydrogenase electron transfer subunit (NCBI ptt file) compare
BT0156 -2.8 -1.9 transcriptional regulator (NCBI ptt file) compare
BT4572 -2.8 -6.2 enolase (NCBI ptt file) compare
BT4720 -2.8 -3.8 putative RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT1153 -2.8 -7.0 phosphoserine aminotransferase (NCBI ptt file) compare
BT2387 -2.8 -8.6 O-acetylhomoserine (thiol)-lyase (NCBI ptt file) compare
BT0351 -2.8 -3.3 L-arabinose isomerase (NCBI ptt file) compare
BT4265 -2.8 -1.9 GMP synthase (glutamine-hydrolyzing) (NCBI ptt file) compare
BT3549 -2.8 -7.3 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
BT1956 -2.8 -4.2 putative cell surface protein (NCBI ptt file) compare
BT0556 -2.8 -1.9 carbamoyl phosphate synthetase III (glutamine-hydrolyzing) (NCBI ptt file) compare
BT4305 -2.8 -10.4 putative alpha-amylase (NCBI ptt file) compare
BT4644 -2.7 -1.9 putative anti-sigma factor (NCBI ptt file) compare
BT3758 -2.7 -4.8 N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) compare
BT2843 -2.7 -1.9 integrase (NCBI ptt file) compare
BT1339 -2.7 -5.4 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase (NCBI ptt file) compare
BT3195 -2.7 -3.2 conserved hypothetical protein (NCBI ptt file) compare
BT1746 -2.7 -2.3 conserved hypothetical protein (NCBI ptt file) compare
BT0617 -2.7 -1.8 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfB (NCBI ptt file) compare
BT4551 -2.7 -1.8 putative GTPase, ThdF family (NCBI ptt file) compare
BT4667 -2.7 -8.5 beta-galactosidase (NCBI ptt file) compare
BT0350 -2.6 -5.8 ribulokinase (EC 2.7.1.16) (from data) compare
BT4191 -2.6 -5.3 hypothetical protein (NCBI ptt file) compare
BT1955 -2.6 -7.0 putative cell wall biogenesis protein (NCBI ptt file) compare
BT3935 -2.6 -4.0 aminotransferase (NCBI ptt file) compare
BT0876 -2.6 -1.8 conserved hypothetical protein (NCBI ptt file) compare
BT2437 -2.6 -6.5 hypothetical protein (NCBI ptt file) compare
BT4041 -2.6 -4.8 conserved hypothetical protein (NCBI ptt file) compare
BT2415 -2.6 -10.7 aspartate aminotransferase (NCBI ptt file) compare
BT4049 -2.6 -3.9 putative ArgK protein with ATPase and kinase domains (NCBI ptt file) compare
BT0352 -2.5 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT3462 -2.5 -4.5 TPR domain protein (NCBI ptt file) compare
BT1558 -2.5 -4.1 hypothetical protein (NCBI ptt file) compare
BT2413 -2.5 -8.7 homoserine O-succinyltransferase (NCBI ptt file) compare
BT1342 -2.5 -4.1 putative UDP-glucuronic acid epimerase (NCBI ptt file) compare
BT1343 -2.5 -3.4 putative capsule biosynthesis protein (NCBI ptt file) compare
BT0249 -2.5 -1.7 5-methyltetrahydrofolate--homocysteine methyltransferase or methionine synthase (NCBI ptt file) compare
BT0728 -2.5 -3.7 transcriptional regulator (NCBI ptt file) compare
BT0134 -2.4 -2.3 conserved hypothetical protein (NCBI ptt file) compare
BT4195 -2.4 -2.8 conserved hypothetical protein (NCBI ptt file) compare
BT0258 -2.4 -9.5 glucosamine-6-phosphate isomerase (NCBI ptt file) compare
BT3761 -2.4 -5.7 N-succinylglutamate synthase (from data) compare
BT2390 -2.4 -12.8 conserved hypothetical protein (NCBI ptt file) compare
BT1530 -2.4 -2.9 putative outer membrane protein OprM precursor (NCBI ptt file) compare
BT0875 -2.4 -4.5 beta-ureidopropionase (NCBI ptt file) compare
BT4304 -2.4 -12.0 putative glycosyltransferase (NCBI ptt file) compare
BT2938 -2.4 -3.6 putative glycosyltransferase (NCBI ptt file) compare
BT1439 -2.4 -9.8 Outer membrane binding protein for vancomycin (SusD-like) (from data) compare
BT2146 -2.4 -10.6 4-alpha-glucanotransferase (NCBI ptt file) compare
BT0771 -2.4 -3.2 1,4-alpha-glucan branching enzyme (isoamylase or pullulanase type II) (NCBI ptt file) compare
BT4599 -2.4 -5.4 putative transcriptional regulator (NCBI ptt file) compare
BT2153 -2.3 -2.2 putative Fe-S oxidoreductases (NCBI ptt file) compare
BT3431 -2.3 -6.3 DNA repair protein (NCBI ptt file) compare
BT3395 -2.3 -8.7 N-succinylglutamate kinase (EC 2.7.2.-) (from data) compare
BT1536 -2.3 -5.0 ABC transporter permease (NCBI ptt file) compare
BT1854 -2.3 -1.5 putative membrane-associated phospholipid phosphatase (NCBI ptt file) compare
BT4303 -2.3 -13.5 glycogen debranching enzyme-related protein (4-alpha-glucanotransferase) (NCBI ptt file) compare
BT_2008 -2.3 -2.1 hypothetical protein (RefSeq) compare
BT0548 -2.2 -2.1 diaminopimelate epimerase (NCBI ptt file) compare
BT1358 -2.2 -2.2 putative transcriptional regulator (NCBI ptt file) compare
BT1352 -2.2 -3.9 putative glycosyltransferase HI1698 (NCBI ptt file) compare
BT3760 -2.2 -6.4 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
BT2977 -2.2 -11.1 peptidylprolyl isomerase (NCBI ptt file) compare
BT1221 -2.2 -2.6 glucose-6-phosphate 1-dehydrogenase (NCBI ptt file) compare
BT1222 -2.2 -2.1 6-phosphogluconate dehydrogenase,decarboxylating (NCBI ptt file) compare
BT2161 -2.2 -2.8 50S ribosomal protein L9 (NCBI ptt file) compare
BT4723 -2.2 -2.6 putative anti-sigma factor (NCBI ptt file) compare
BT1068 -2.2 -3.5 hypothetical protein (NCBI ptt file) compare
BT3043 -2.2 -10.9 putative xylanase (NCBI ptt file) compare
BT1350 -2.2 -3.6 CDP-glucose 4,6-dehydratase (NCBI ptt file) compare
BT3655 -2.2 -8.3 arabinosidase (NCBI ptt file) compare
BT2185 -2.1 -4.0 hypothetical protein (NCBI ptt file) compare
BT1346 -2.1 -3.2 capsule biosynthesis protein capA (NCBI ptt file) compare
BT1361 -2.1 -5.9 DNA repair protein recN (Recombination protein N) (NCBI ptt file) compare
BT1354 -2.1 -4.9 putative flippase (NCBI ptt file) compare
BT4658 -2.1 -4.4 glucuronyl hydrolase (NCBI ptt file) compare
BT4255 -2.1 -4.1 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) compare
BT1355 -2.1 -3.8 hypothetical protein (NCBI ptt file) compare
BT1340 -2.1 -3.9 putative lipopolysaccharide biosynthesis glycosyltransferase (NCBI ptt file) compare
BT1844 -2.1 -4.2 transcriptional regulator, putative iron uptake regulation protein (NCBI ptt file) compare
BT3363 -2.1 -1.4 lipopolysaccharide core biosynthesis protein LpsA (NCBI ptt file) compare
BT4386 -2.0 -1.9 hypoxanthine-guanine phosphoribosyltransferase (NCBI ptt file) compare
BT1860 -2.0 -5.1 3-isopropylmalate dehydratase large subunit (NCBI ptt file) compare
BT1082 -2.0 -10.6 Na+/solute symporter (NCBI ptt file) compare
BT2945 -2.0 -6.9 UDP-N-acetyl-D-mannosamine dehydrogenase (NCBI ptt file) compare
BT2899 -2.0 -13.4 hypothetical protein (NCBI ptt file) compare
BT1859 -2.0 -4.7 3-isopropylmalate dehydratase small subunit (NCBI ptt file) compare
BT3980 -2.0 -2.2 hypothetical protein (NCBI ptt file) compare
BT3727 -2.0 -5.4 hypothetical protein (NCBI ptt file) compare
BT4193 -2.0 -8.7 dipeptidyl peptidase IV (NCBI ptt file) compare
BT1347 -2.0 -2.7 conserved hypothetical protein (NCBI ptt file) compare
BT0679 -2.0 -2.6 cation efflux system protein czcB (NCBI ptt file) compare
BT1345 -2.0 -1.4 glycosyltransferase (NCBI ptt file) compare
BT1152 -2.0 -5.4 D-3-phosphoglycerate dehydrogenase (NCBI ptt file) compare
BT2059 -2.0 -1.3 TonB (NCBI ptt file) compare
BT0356 -2.0 -3.5 aldose 1-epimerase precursor (NCBI ptt file) compare
BT0570 -2.0 -4.8 excinuclease ABC subunit B (NCBI ptt file) compare
BT3759 -1.9 -7.9 N-succinylglutamylphosphate reductase (EC 1.2.1.-) (from data) compare
BT2742 -1.9 -1.0 integrase, site-specific recombinase (NCBI ptt file) compare
BT3981 -1.9 -1.3 hypothetical protein (NCBI ptt file) compare
BT1759 -1.9 -4.2 levanase precursor (2,6-beta-D-fructofuranosidase) (NCBI ptt file) compare
BT0811 -1.9 -4.5 putative tRNA/rRNA methyltransferase (NCBI ptt file) compare
BT3687 -1.9 -9.5 conserved hypothetical protein (NCBI ptt file) compare
BT1341 -1.9 -4.0 UDP-glucose 6-dehydrogenase (NCBI ptt file) compare
BT1951 -1.9 -2.5 Fe3+ ABC transporter, permease protein (NCBI ptt file) compare
BT1952 -1.9 -6.8 Fe3+ ABC transporter, periplasmic iron-binding protein (NCBI ptt file) compare
BT2841 -1.9 -2.0 pyruvate kinase (NCBI ptt file) compare
BT1220 -1.9 -1.3 6-phosphogluconolactonase (NCBI ptt file) compare
BT2062 -1.9 -7.1 6-phosphofructokinase (NCBI ptt file) compare
BT2136 -1.8 -4.2 putative purple acid phosphatase (NCBI ptt file) compare
BT1739 -1.8 -9.5 excinuclease ABC subunit A (NCBI ptt file) compare
BT0973 -1.8 -2.9 hypothetical protein (NCBI ptt file) compare
BT1356 -1.8 -2.9 putative capsule polysaccharide export protein (NCBI ptt file) compare
BT0529 -1.8 -3.3 indole-3-glycerol phosphate synthase (NCBI ptt file) compare
BT2944 -1.8 -5.3 putative UDP-N-acetylglucosamine 2-epimerase (NCBI ptt file) compare
BT3845 -1.8 -2.4 inosine-5'-monophosphate dehydrogenase (NCBI ptt file) compare
BT0578 -1.8 -5.2 excinuclease ABC subunit A (NCBI ptt file) compare
BT2090 -1.8 -7.3 methylmalonyl-CoA mutase large subunit (NCBI ptt file) compare
BT1871 -1.7 -9.1 putative alpha-glucosidase (NCBI ptt file) compare
BT1979 -1.7 -3.4 Meso-diaminopimelate D-dehydrogenase (NCBI ptt file) compare
BT2145 -1.7 -8.7 ribonucleoside-diphosphate reductase alpha chain (NCBI ptt file) compare
BT3348 -1.7 -6.5 unsaturated glucuronide lyase acting on chondroitin/heparin disaccharides (EC 3.2.1.180) (from data) compare
BT3337 -1.7 -8.5 RND efflux system, outer membrane component BipA (from data) compare
BT1808 -1.7 -1.9 conserved hypothetical protein (NCBI ptt file) compare
BT2741 -1.7 -3.2 sigma-54 modulation protein (NCBI ptt file) compare
BT4103 -1.7 -3.7 putative Sec-independent protein translocase (NCBI ptt file) compare
BT3819 -1.7 -2.6 conserved hypothetical protein (NCBI ptt file) compare
BT3843 -1.7 -3.4 ATP-dependent Clp protease ATP-binding subunit (NCBI ptt file) compare
BT1351 -1.7 -1.1 glucose-1-phosphate cytidylyltransferase (NCBI ptt file) compare
BT1363 -1.7 -1.1 DNA Pol III Epsilon Chain (NCBI ptt file) compare
BT0618 -1.6 -1.9 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfC (NCBI ptt file) compare
BT2148 -1.6 -2.8 glycosyltransferase (NCBI ptt file) compare
BT0621 -1.6 -2.4 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfE (NCBI ptt file) compare
BT1962 -1.6 -2.3 hypothetical protein (NCBI ptt file) compare
BT1348 -1.6 -2.6 CDP-abequose synthase (NCBI ptt file) compare
BT4300 -1.6 -2.8 transcription regulator, CRP family (NCBI ptt file) compare
BT2074 -1.6 -6.6 ketol-acid reductoisomerase (NCBI ptt file) compare
BT0900 -1.6 -1.5 putative tetratricopeptide repeat family protein (NCBI ptt file) compare
BT1188 -1.6 -2.5 putative transcription regulator (NCBI ptt file) compare
BT4649 -1.6 -2.0 hypothetical protein (NCBI ptt file) compare
BT4239 -1.6 -5.7 hypothetical protein (NCBI ptt file) compare
BT3762 -1.5 -4.6 arginine repressor, transcriptional regulator of arginine metabolism (NCBI ptt file) compare
BT0699 -1.5 -2.2 putative sugar transporter (NCBI ptt file) compare
BT1524 -1.5 -2.2 hypothetical protein (NCBI ptt file) compare
BT0175 -1.5 -2.0 conserved hypothetical protein (NCBI ptt file) compare
BT0177 -1.5 -2.9 hypothetical protein (NCBI ptt file) compare
BT2040 -1.5 -3.3 hypothetical protein (NCBI ptt file) compare
BT3801 -1.5 -2.4 rteB, two-component system response regulator (NCBI ptt file) compare
BT4416 -1.5 -3.1 Cu2+ homeostasis protein CutC (NCBI ptt file) compare
BT1344 -1.5 -4.0 putative glycosyltransferase (NCBI ptt file) compare
BT4322 -1.5 -2.1 conserved hypothetical protein, with a diacylglycerol kinase catalytic domain (NCBI ptt file) compare
BT4466 -1.5 -2.0 hypothetical protein (NCBI ptt file) compare
BT0738 -1.5 -3.6 serine hydroxymethyltransferase (NCBI ptt file) compare
BT4237 -1.4 -4.0 tRNA pseudouridine synthase A (NCBI ptt file) compare
BT1380 -1.4 -1.9 imidazole glycerol phosphate synthase subunit hisH (NCBI ptt file) compare


Specific Phenotypes

For 2 genes in this experiment