Experiment set17IT028 for Pseudomonas stutzeri RCH2

Compare to:

LB with 1-ethyl-3-methylimidazolium acetate 40 mM

200 most important genes:

  gene name fitness t score description  
Psest_3317 -5.3 -5.8 Phosphotransferase System HPr (HPr) Family compare
Psest_1663 -4.3 -3.0 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0259 -4.1 -1.4 cell division ATP-binding protein FtsE compare
Psest_3862 -4.1 -16.0 phosphoenolpyruvate-protein phosphotransferase compare
Psest_1991 -3.6 -14.2 Glutathione S-transferase compare
Psest_0542 -3.4 -12.5 AMP nucleosidase compare
Psest_0449 -3.3 -13.3 Glutamine synthetase adenylyltransferase compare
Psest_0725 -3.2 -2.0 Negative regulator of beta-lactamase expression compare
Psest_3926 -3.1 -13.7 GTP-binding protein TypA/BipA compare
Psest_1496 -3.0 -1.7 Holliday junction DNA helicase, RuvA subunit compare
Psest_0309 -2.9 -1.6 RND family efflux transporter, MFP subunit compare
Psest_1486 -2.8 -4.1 hypothetical protein compare
Psest_2975 -2.8 -2.4 tRNA_Arg_CCT compare
Psest_3092 -2.7 -2.5 ribonuclease III, bacterial compare
Psest_0028 -2.7 -5.9 Coproporphyrinogen III oxidase compare
Psest_2945 -2.6 -1.8 septum site-determining protein MinC compare
Psest_0161 -2.6 -2.8 Membrane-bound metallopeptidase compare
Psest_3301 -2.6 -2.9 Predicted transcriptional regulator, BolA superfamily compare
Psest_1012 -2.5 -4.2 Signal transduction histidine kinase compare
Psest_3146 -2.5 -1.4 hypothetical protein compare
Psest_3960 -2.5 -1.7 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_4191 -2.4 -4.0 Transcriptional regulator compare
Psest_2304 -2.4 -1.1 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0398 -2.3 -5.5 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_1660 -2.3 -2.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_2712 -2.2 -5.0 Surface lipoprotein compare
Psest_1772 -2.2 -4.4 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3670 -2.2 -9.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_3531 -2.1 -1.4 Peptidase propeptide and YPEB domain. compare
Psest_0515 -2.1 -4.0 rare lipoprotein A compare
Psest_2585 -2.1 -0.9 pseudouridylate synthase I compare
Psest_3307 -2.1 -6.2 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0310 -2.0 -3.8 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2744 -1.9 -1.2 Uncharacterized conserved protein compare
Psest_2850 -1.9 -1.4 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1814 -1.9 -11.7 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2095 -1.8 -7.7 Arabinose efflux permease compare
Psest_2325 -1.8 -8.2 alpha-L-glutamate ligase-related protein compare
Psest_3850 -1.8 -0.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2946 -1.7 -2.6 septum site-determining protein MinD compare
Psest_1532 -1.7 -4.0 DNA recombination-dependent growth factor C compare
Psest_2864 -1.7 -3.3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3351 -1.7 -5.4 peptide chain release factor 3 compare
Psest_1540 -1.7 -1.2 biotin-dependent carboxylase uncharacterized domain compare
Psest_1870 -1.6 -1.2 Transcriptional regulators compare
Psest_2714 -1.6 -2.2 7-cyano-7-deazaguanine reductase compare
Psest_1048 -1.6 -7.9 Uncharacterized paraquat-inducible protein A compare
Psest_3766 -1.6 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_1990 -1.6 -2.2 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Psest_2651 -1.5 -3.5 DNA topoisomerase I, bacterial compare
Psest_1679 -1.5 -1.6 ribonuclease, Rne/Rng family compare
Psest_2768 -1.5 -2.0 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_3938 -1.5 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_1082 -1.5 -1.6 Enoyl-CoA hydratase/carnithine racemase compare
Psest_1510 -1.5 -2.8 Putative Zn-dependent protease, contains TPR repeats compare
Psest_1999 -1.5 -0.8 pseudouridine synthase compare
Psest_0498 -1.5 -1.4 ribosome small subunit-dependent GTPase A compare
Psest_1709 -1.5 -2.2 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0260 -1.5 -1.4 Cell division protein compare
Psest_2324 -1.5 -10.0 hypothetical protein compare
Psest_3838 -1.5 -1.9 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_1960 -1.5 -3.2 Bacterial protein of unknown function (DUF903). compare
Psest_0988 -1.4 -1.6 Protein of unknown function (DUF2845). compare
Psest_0503 -1.4 -1.5 Acyl dehydratase compare
Psest_3377 -1.4 -0.9 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_2243 -1.4 -0.9 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_2772 -1.4 -3.4 MIP family channel proteins compare
Psest_2278 -1.4 -2.8 coenzyme PQQ biosynthesis protein PqqD compare
Psest_0148 -1.4 -2.0 nitrate transport ATP-binding subunits C and D compare
Psest_0533 -1.4 -3.5 Sel1 repeat. compare
Psest_4335 -1.4 -2.0 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_3304 -1.4 -4.6 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_0697 -1.4 -1.7 ribosomal protein L9 compare
Psest_1509 -1.3 -5.1 quinolinate synthetase complex, A subunit compare
Psest_0442 -1.3 -2.5 ATPases of the AAA+ class compare
Psest_1812 -1.3 -4.4 pseudaminic acid CMP-transferase compare
Psest_2901 -1.3 -1.6 hypothetical protein compare
Psest_4338 -1.2 -3.0 Fe2+-dicitrate sensor, membrane component compare
Psest_2333 -1.2 -0.8 Protein of unknown function (DUF3359). compare
Psest_3080 -1.2 -1.4 AraC-type DNA-binding domain-containing proteins compare
Psest_2648 -1.2 -1.5 hypothetical protein compare
Psest_3383 -1.2 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_0508 -1.2 -5.0 gamma-glutamyl phosphate reductase compare
Psest_2718 -1.2 -0.9 hypothetical protein compare
Psest_3904 -1.2 -1.2 hypothetical protein compare
Psest_3100 -1.2 -1.4 RNA polymerase sigma factor RpoE compare
Psest_1050 -1.2 -7.6 Paraquat-inducible protein B compare
Psest_1686 -1.2 -3.1 fatty acid/phospholipid synthesis protein PlsX compare
Psest_3305 -1.2 -5.7 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_4044 -1.2 -2.3 type I site-specific deoxyribonuclease, HsdR family compare
Psest_4088 -1.1 -1.7 Transcriptional regulators compare
Psest_2845 -1.1 -5.7 [Protein-PII] uridylyltransferase compare
Psest_3044 -1.1 -3.2 deoxycytidine triphosphate deaminase compare
Psest_1837 -1.1 -3.4 Endoglucanase compare
Psest_1804 -1.1 -1.6 Superfamily II DNA and RNA helicases compare
Psest_2711 -1.1 -1.8 PilZ domain. compare
Psest_2622 -1.1 -1.7 TadE-like protein. compare
Psest_4102 -1.1 -1.4 peroxiredoxin, Ohr subfamily compare
Psest_2778 -1.1 -1.6 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3231 -1.1 -1.6 hypothetical protein compare
Psest_1073 -1.1 -2.8 TRAP-type mannitol/chloroaromatic compound transport system, small permease component compare
Psest_2312 -1.1 -5.4 Small-conductance mechanosensitive channel compare
Psest_2591 -1.1 -1.0 3-isopropylmalate dehydratase, large subunit compare
Psest_0031 -1.1 -1.2 Uncharacterized conserved protein compare
Psest_2123 -1.1 -1.4 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_0867 -1.1 -1.3 hypothetical protein compare
Psest_0744 -1.1 -0.7 Uncharacterized conserved protein compare
Psest_1230 -1.1 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_0601 -1.1 -1.4 hypothetical protein compare
Psest_0192 -1.1 -3.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4303 -1.1 -1.4 HEAT repeat. compare
Psest_0284 -1.1 -6.4 pyridoxal phosphate enzyme, YggS family compare
Psest_2590 -1.1 -0.7 3-isopropylmalate dehydratase, small subunit compare
Psest_0716 -1.0 -0.8 Protein of unknown function (DUF3094). compare
Psest_2323 -1.0 -6.8 Uncharacterized protein conserved in archaea compare
Psest_4080 -1.0 -2.6 Carbonic anhydrase compare
Psest_1813 -1.0 -5.4 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_1997 -1.0 -1.3 6-phosphogluconolactonase compare
Psest_2488 -1.0 -2.2 Predicted membrane protein compare
Psest_0191 -1.0 -0.6 PAS domain S-box compare
Psest_2773 -1.0 -3.7 glycerol kinase compare
Psest_1704 -1.0 -0.9 Dehydrogenases (flavoproteins) compare
Psest_2719 -1.0 -1.1 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_2873 -1.0 -3.4 competence/damage-inducible protein CinA C-terminal domain compare
Psest_2557 -1.0 -1.7 Protein of unknown function (DUF2474). compare
Psest_4221 -1.0 -2.7 homoserine kinase, Neisseria type compare
Psest_4370 -1.0 -1.5 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1600 -1.0 -1.5 hypothetical protein compare
Psest_3389 -1.0 -1.9 hypothetical protein compare
Psest_1417 -1.0 -0.9 hypothetical protein compare
Psest_3810 -1.0 -0.6 orotate phosphoribosyltransferase compare
Psest_0466 -1.0 -2.0 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1535 -0.9 -2.4 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
Psest_3159 -0.9 -3.3 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3908 -0.9 -0.9 Cytochrome c553 compare
Psest_2976 -0.9 -0.7 hypothetical protein compare
Psest_3060 -0.9 -2.1 hypothetical protein compare
Psest_0355 -0.9 -1.1 Glycine cleavage system regulatory protein compare
Psest_2346 -0.9 -2.7 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_1049 -0.9 -1.9 Uncharacterized paraquat-inducible protein A compare
Psest_0417 -0.9 -1.6 Acyl-CoA dehydrogenases compare
Psest_3546 -0.9 -0.8 Phosphatidylglycerophosphatase A and related proteins compare
Psest_2001 -0.9 -0.9 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_4219 -0.9 -1.7 DNA polymerase I compare
Psest_3458 -0.9 -2.0 hypothetical protein compare
Psest_2442 -0.9 -1.6 hypothetical protein compare
Psest_1111 -0.9 -2.0 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_2872 -0.9 -1.1 protein RecA compare
Psest_0164 -0.9 -0.5 Glutaredoxin, GrxC family compare
Psest_0257 -0.9 -1.1 Predicted Zn-dependent peptidases compare
Psest_1659 -0.9 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_2061 -0.9 -2.2 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_0450 -0.9 -2.9 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) compare
Psest_1479 -0.9 -2.1 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_0316 -0.9 -1.3 Cytochrome c556 compare
Psest_2898 -0.9 -2.5 hypothetical protein compare
Psest_2120 -0.8 -1.3 Transcriptional regulator compare
Psest_0083 -0.8 -1.3 Uncharacterized conserved protein compare
Psest_2240 -0.8 -1.1 hypothetical protein compare
Psest_1103 -0.8 -1.4 GTP-binding protein YchF compare
Psest_2092 -0.8 -1.9 hypothetical protein compare
Psest_2847 -0.8 -2.3 Multisubunit Na+/H+ antiporter, MnhF subunit compare
Psest_1065 -0.8 -1.6 hypothetical protein compare
Psest_2673 -0.8 -4.6 Arabinose efflux permease compare
Psest_4095 -0.8 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_2791 -0.8 -1.5 hypothetical protein compare
Psest_2646 -0.8 -0.9 SOS regulatory protein LexA compare
Psest_3338 -0.8 -0.7 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_3303 -0.8 -2.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2343 -0.8 -1.8 Mg-dependent DNase compare
Psest_2887 -0.8 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_3881 -0.8 -0.7 hypothetical protein compare
Psest_3185 -0.8 -1.0 MoxR-like ATPases compare
Psest_2285 -0.8 -2.0 ATP-dependent protease La compare
Psest_0165 -0.8 -1.4 protein-export chaperone SecB compare
Psest_1661 -0.8 -1.2 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1854 -0.8 -2.3 Domain of Unknown Function (DUF748). compare
Psest_3910 -0.8 -0.7 Uncharacterized protein conserved in bacteria compare
Psest_0175 -0.8 -3.3 Xaa-Pro aminopeptidase compare
Psest_2104 -0.8 -0.7 IscR-regulated protein YhgI compare
Psest_2682 -0.8 -2.4 fumarate hydratase, class II compare
Psest_0400 -0.8 -1.9 Geranylgeranyl pyrophosphate synthase compare
Psest_1829 -0.8 -3.0 acetyl-CoA acetyltransferases compare
Psest_2981 -0.8 -1.2 sodium pump decarboxylases, gamma subunit compare
Psest_1981 -0.8 -2.5 S-methyl-5-thioribose-1-phosphate isomerase compare
Psest_3496 -0.8 -0.7 Predicted metal-binding protein compare
Psest_3958 -0.8 -1.9 Predicted Fe-S-cluster oxidoreductase compare
Psest_1550 -0.8 -4.0 conserved hypothetical protein compare
Psest_0198 -0.8 -3.6 TRAP transporter solute receptor, TAXI family compare
Psest_1947 -0.7 -0.7 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2589 -0.7 -4.1 3-isopropylmalate dehydrogenase compare
Psest_4113 -0.7 -3.1 hypothetical protein compare
Psest_4274 -0.7 -1.4 hypothetical protein compare
Psest_3339 -0.7 -2.4 Signal transduction histidine kinase compare
Psest_3756 -0.7 -1.2 hypothetical protein compare
Psest_1284 -0.7 -1.7 exodeoxyribonuclease VII, large subunit compare
Psest_2424 -0.7 -0.9 K+ transport systems, NAD-binding component compare
Psest_2860 -0.7 -2.5 hypothetical protein compare
Psest_2667 -0.7 -1.6 Uncharacterized protein involved in propionate catabolism compare
Psest_0457 -0.7 -1.6 Lipopolysaccharide kinase (Kdo/WaaP) family. compare


Specific Phenotypes

For 3 genes in this experiment

For stress 1-ethyl-3-methylimidazolium acetate in Pseudomonas stutzeri RCH2

For stress 1-ethyl-3-methylimidazolium acetate across organisms