Experiment set17IT026 for Pseudomonas stutzeri RCH2

Compare to:

LB with Sodium acetate 80 mM

200 most important genes:

  gene name fitness t score description  
Psest_3960 -5.1 -2.3 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1663 -3.9 -3.8 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0542 -3.9 -13.3 AMP nucleosidase compare
Psest_4103 -3.7 -2.3 AraC-type DNA-binding domain-containing proteins compare
Psest_1660 -3.4 -2.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0164 -3.1 -1.1 Glutaredoxin, GrxC family compare
Psest_3395 -2.8 -1.4 hypothetical protein compare
Psest_0466 -2.5 -5.0 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0737 -2.5 -1.1 Cu(I)-responsive transcriptional regulator compare
Psest_1111 -2.4 -3.9 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_3226 -2.4 -1.2 Predicted membrane protein compare
Psest_4128 -2.4 -2.0 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3862 -2.3 -11.5 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0558 -2.3 -1.0 urease, beta subunit compare
Psest_2325 -2.2 -8.1 alpha-L-glutamate ligase-related protein compare
Psest_1661 -2.2 -1.5 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_2324 -2.2 -12.8 hypothetical protein compare
Psest_1496 -2.2 -1.6 Holliday junction DNA helicase, RuvA subunit compare
Psest_3670 -2.1 -9.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_3926 -2.1 -10.9 GTP-binding protein TypA/BipA compare
Psest_3317 -2.1 -3.3 Phosphotransferase System HPr (HPr) Family compare
Psest_1282 -2.1 -1.8 Amidases related to nicotinamidase compare
Psest_0191 -2.0 -1.0 PAS domain S-box compare
Psest_3092 -2.0 -2.3 ribonuclease III, bacterial compare
Psest_2718 -1.9 -1.3 hypothetical protein compare
Psest_0487 -1.9 -3.7 Uncharacterized protein conserved in bacteria compare
Psest_0031 -1.9 -2.0 Uncharacterized conserved protein compare
Psest_1167 -1.9 -1.1 hypothetical protein compare
Psest_0515 -1.9 -4.2 rare lipoprotein A compare
Psest_0442 -1.9 -2.2 ATPases of the AAA+ class compare
Psest_3128 -1.8 -4.5 Protein-disulfide isomerase compare
Psest_3351 -1.8 -5.7 peptide chain release factor 3 compare
Psest_4274 -1.7 -2.4 hypothetical protein compare
Psest_1920 -1.7 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_0872 -1.7 -1.0 Helix-turn-helix. compare
Psest_3159 -1.7 -4.4 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1814 -1.7 -9.8 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2120 -1.6 -2.3 Transcriptional regulator compare
Psest_4335 -1.6 -2.5 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_4256 -1.6 -3.2 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_2946 -1.6 -2.4 septum site-determining protein MinD compare
Psest_1242 -1.6 -2.5 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0097 -1.6 -2.1 phosphonates metabolism transcriptional regulator PhnF compare
Psest_2023 -1.6 -3.5 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_1824 -1.6 -2.5 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_1510 -1.6 -3.2 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3084 -1.5 -1.6 methyltransferase, putative compare
Psest_3908 -1.5 -1.4 Cytochrome c553 compare
Psest_0691 -1.5 -9.0 ribonuclease R compare
Psest_0533 -1.5 -3.2 Sel1 repeat. compare
Psest_1013 -1.5 -3.1 phosphoribosylamine--glycine ligase compare
Psest_1659 -1.5 -2.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_2308 -1.5 -1.0 Predicted Fe-S protein compare
Psest_0988 -1.5 -2.3 Protein of unknown function (DUF2845). compare
Psest_0575 -1.5 -0.9 HrpA-like helicases compare
Psest_3565 -1.5 -1.4 hypothetical protein compare
Psest_1884 -1.5 -2.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1655 -1.5 -3.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_2278 -1.4 -3.2 coenzyme PQQ biosynthesis protein PqqD compare
Psest_3014 -1.4 -1.2 cob(I)alamin adenosyltransferase compare
Psest_0449 -1.4 -6.3 Glutamine synthetase adenylyltransferase compare
Psest_2646 -1.4 -1.8 SOS regulatory protein LexA compare
Psest_3546 -1.4 -1.0 Phosphatidylglycerophosphatase A and related proteins compare
Psest_3044 -1.4 -5.2 deoxycytidine triphosphate deaminase compare
Psest_3237 -1.4 -1.2 hypothetical protein compare
Psest_1505 -1.4 -1.7 Organic radical activating enzymes compare
Psest_1704 -1.4 -0.9 Dehydrogenases (flavoproteins) compare
Psest_2953 -1.4 -1.6 Histone acetyltransferase compare
Psest_4286 -1.4 -7.2 Glutamine synthetase compare
Psest_0867 -1.4 -1.6 hypothetical protein compare
Psest_0159 -1.3 -2.9 Uncharacterized protein conserved in bacteria compare
Psest_3301 -1.3 -2.8 Predicted transcriptional regulator, BolA superfamily compare
Psest_3306 -1.3 -3.9 conserved hypothetical integral membrane protein compare
Psest_3100 -1.3 -1.3 RNA polymerase sigma factor RpoE compare
Psest_0207 -1.3 -2.7 hypothetical protein compare
Psest_4247 -1.3 -2.2 Serine/threonine protein phosphatase compare
Psest_2975 -1.3 -1.8 tRNA_Arg_CCT compare
Psest_1679 -1.3 -1.4 ribonuclease, Rne/Rng family compare
Psest_1991 -1.3 -7.0 Glutathione S-transferase compare
Psest_3377 -1.3 -1.0 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1149 -1.3 -2.7 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_3449 -1.3 -1.8 DJ-1 family protein compare
Psest_4370 -1.3 -2.5 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_2923 -1.3 -1.8 hypothetical protein compare
Psest_0401 -1.3 -1.3 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_4151 -1.3 -2.2 Flagellar hook capping protein compare
Psest_2850 -1.3 -1.2 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1012 -1.3 -3.4 Signal transduction histidine kinase compare
Psest_0498 -1.2 -1.3 ribosome small subunit-dependent GTPase A compare
Psest_2001 -1.2 -1.2 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3305 -1.2 -5.8 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_4044 -1.2 -2.1 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0309 -1.2 -1.1 RND family efflux transporter, MFP subunit compare
Psest_4056 -1.2 -3.5 FMN reductase, SsuE family compare
Psest_4142 -1.2 -1.1 hypothetical protein compare
Psest_2545 -1.2 -2.3 recombination protein RecR compare
Psest_3447 -1.2 -1.3 Uncharacterized MobA-related protein compare
Psest_2872 -1.2 -1.3 protein RecA compare
Psest_2323 -1.2 -6.4 Uncharacterized protein conserved in archaea compare
Psest_1782 -1.2 -1.8 Predicted transcriptional regulators compare
Psest_0697 -1.2 -2.2 ribosomal protein L9 compare
Psest_0717 -1.2 -8.7 Protein of unknown function (DUF1631). compare
Psest_0227 -1.1 -2.5 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Psest_0013 -1.1 -3.6 Lauroyl/myristoyl acyltransferase compare
Psest_3496 -1.1 -0.9 Predicted metal-binding protein compare
Psest_1813 -1.1 -6.6 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2786 -1.1 -0.9 Domain of unknown function (DUF3597). compare
Psest_1750 -1.1 -1.9 Protein of unknown function (DUF2802). compare
Psest_3731 -1.1 -7.4 exopolyphosphatase compare
Psest_1768 -1.1 -2.6 thiopurine S-methyltransferase, Se/Te detoxification family compare
Psest_0722 -1.1 -4.1 Predicted ATPase compare
Psest_1204 -1.1 -1.6 Transcriptional regulators compare
Psest_3307 -1.1 -4.4 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0368 -1.1 -1.8 Transcriptional regulator compare
Psest_1612 -1.1 -3.8 ABC-type multidrug transport system, ATPase component compare
Psest_0998 -1.1 -1.6 poly(A) polymerase compare
Psest_2945 -1.1 -1.2 septum site-determining protein MinC compare
Psest_2530 -1.1 -3.1 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_1532 -1.1 -2.9 DNA recombination-dependent growth factor C compare
Psest_4258 -1.1 -2.6 ABC-type uncharacterized transport system, auxiliary component compare
Psest_0857 -1.1 -1.0 Membrane transporters of cations and cationic drugs compare
Psest_1990 -1.0 -1.9 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Psest_3304 -1.0 -2.9 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_1103 -1.0 -2.5 GTP-binding protein YchF compare
Psest_3367 -1.0 -1.1 translation initation factor SUI1, putative, prokaryotic compare
Psest_2119 -1.0 -2.7 Glycine/D-amino acid oxidases (deaminating) compare
Psest_2538 -1.0 -1.1 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_2384 -1.0 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_2017 -1.0 -3.4 Predicted acyltransferase compare
Psest_1656 -1.0 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2768 -1.0 -2.0 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_0845 -1.0 -0.7 hypothetical protein compare
Psest_0831 -1.0 -0.7 hypothetical protein compare
Psest_2756 -1.0 -0.8 hypothetical protein compare
Psest_2773 -1.0 -3.7 glycerol kinase compare
Psest_1888 -1.0 -0.7 Sua5/YciO/YrdC/YwlC family protein compare
Psest_2772 -1.0 -2.7 MIP family channel proteins compare
Psest_0115 -0.9 -1.0 Predicted integral membrane protein compare
Psest_2648 -0.9 -1.3 hypothetical protein compare
Psest_1471 -0.9 -3.3 Predicted membrane protein compare
Psest_2096 -0.9 -2.1 Domain of unknown function (DUF1883). compare
Psest_1819 -0.9 -7.5 Nucleoside-diphosphate-sugar epimerases compare
Psest_0660 -0.9 -1.7 Methyl-accepting chemotaxis protein compare
Psest_1065 -0.9 -1.3 hypothetical protein compare
Psest_3904 -0.9 -1.0 hypothetical protein compare
Psest_4008 -0.9 -6.1 PAS domain S-box compare
Psest_2448 -0.9 -2.5 AraC-type DNA-binding domain-containing proteins compare
Psest_4080 -0.9 -3.2 Carbonic anhydrase compare
Psest_2714 -0.9 -1.4 7-cyano-7-deazaguanine reductase compare
Psest_2775 -0.9 -2.0 Glycerol-3-phosphate dehydrogenase compare
Psest_1295 -0.9 -3.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0536 -0.9 -2.9 thiamine-phosphate pyrophosphorylase compare
Psest_1302 -0.9 -2.7 Predicted thioesterase compare
Psest_4406 -0.9 -0.8 hypothetical protein compare
Psest_1947 -0.9 -0.6 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_3336 -0.9 -3.5 Membrane proteins related to metalloendopeptidases compare
Psest_1540 -0.9 -1.0 biotin-dependent carboxylase uncharacterized domain compare
Psest_0709 -0.9 -4.0 pseudouridine synthase, RluA family compare
Psest_0853 -0.9 -2.6 6-phosphogluconolactonase compare
Psest_4051 -0.9 -0.9 molybdenum-pterin binding domain compare
Psest_3178 -0.9 -1.5 formyltetrahydrofolate deformylase compare
Psest_1143 -0.9 -3.0 Small-conductance mechanosensitive channel compare
Psest_0507 -0.9 -3.0 Uncharacterized membrane-associated protein compare
Psest_0165 -0.9 -1.9 protein-export chaperone SecB compare
Psest_3189 -0.9 -1.7 hypothetical protein compare
Psest_0103 -0.8 -1.7 triphosphoribosyl-dephospho-CoA synthase MdcB compare
Psest_0950 -0.8 -2.1 hypothetical protein compare
Psest_2229 -0.8 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_2515 -0.8 -2.3 cytochrome c oxidase, subunit II compare
Psest_1643 -0.8 -0.7 hypothetical protein compare
Psest_3303 -0.8 -2.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2749 -0.8 -2.2 Predicted transcriptional regulators compare
Psest_4191 -0.8 -1.8 Transcriptional regulator compare
Psest_3828 -0.8 -0.8 zinc-binding alcohol dehydrogenase family protein compare
Psest_3435 -0.8 -3.1 hypothetical protein compare
Psest_0516 -0.8 -3.5 D-alanyl-D-alanine carboxypeptidase compare
Psest_1516 -0.8 -1.5 Uncharacterized lipoprotein compare
Psest_0744 -0.8 -0.6 Uncharacterized conserved protein compare
Psest_0484 -0.8 -1.8 hypothetical protein compare
Psest_1614 -0.8 -4.0 ABC-type uncharacterized transport system involved in gliding motility, auxiliary component compare
Psest_1681 -0.8 -1.6 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_2712 -0.8 -2.0 Surface lipoprotein compare
Psest_1657 -0.8 -1.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2719 -0.8 -1.0 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_0187 -0.8 -2.0 Metal-dependent hydrolase compare
Psest_2454 -0.8 -1.3 Rhodanese-related sulfurtransferase compare
Psest_1774 -0.8 -1.4 Glutathione peroxidase compare
Psest_4161 -0.8 -1.4 Flagellar basal body-associated protein compare
Psest_1626 -0.8 -2.5 Predicted integral membrane protein compare
Psest_3784 -0.8 -1.9 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1986 -0.8 -0.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_0161 -0.8 -1.1 Membrane-bound metallopeptidase compare
Psest_0367 -0.8 -0.8 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_1804 -0.8 -1.2 Superfamily II DNA and RNA helicases compare
Psest_4145 -0.8 -2.8 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Psest_4298 -0.8 -0.6 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_0260 -0.8 -0.9 Cell division protein compare
Psest_1628 -0.8 -2.0 hypothetical protein compare
Psest_0791 -0.7 -2.4 Acyl-CoA dehydrogenases compare
Psest_3988 -0.7 -2.8 phosphoenolpyruvate carboxykinase (ATP) compare


Specific Phenotypes

For 2 genes in this experiment

For stress Sodium acetate in Pseudomonas stutzeri RCH2

For stress Sodium acetate across organisms