Experiment set17IT026 for Pseudomonas stutzeri RCH2
LB with Sodium acetate 80 mM
Group: stressMedia: LB + Sodium acetate (80 mM)
Culturing: psRCH2_ML7c, 48 well microplate; Tecan Infinite F200, Aerobic, at 28 (C), shaken=orbital
By: Kelly on 4/17/2014
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 884 C1,C2
Specific Phenotypes
For 2 genes in this experiment
For stress Sodium acetate in Pseudomonas stutzeri RCH2
For stress Sodium acetate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis | 1 |
| Glutathione: Non-redox reactions | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glutamate metabolism
- Arginine and proline metabolism
- Glutathione metabolism
- Nitrogen metabolism
- Metabolism of xenobiotics by cytochrome P450
- Drug metabolism - cytochrome P450
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-glutamine biosynthesis I | 1 | 1 | 1 |
| ammonia assimilation cycle I | 2 | 2 | 1 |
| ammonia assimilation cycle II | 2 | 1 | 1 |
| ammonia assimilation cycle III | 3 | 3 | 1 |
| superpathway of ammonia assimilation (plants) | 3 | 2 | 1 |
| L-aspartate degradation II (aerobic) | 3 | 2 | 1 |
| L-aspartate degradation III (anaerobic) | 3 | 2 | 1 |
| 4-hydroxy-2-nonenal detoxification | 4 | 1 | 1 |
| pentachlorophenol degradation | 10 | 3 | 2 |
| L-glutamate and L-glutamine biosynthesis | 7 | 5 | 1 |
| glutathione-mediated detoxification I | 8 | 3 | 1 |
| gliotoxin biosynthesis | 9 | 1 | 1 |
| glutathione-mediated detoxification II | 9 | 1 | 1 |
| L-arginine biosynthesis II (acetyl cycle) | 10 | 10 | 1 |
| indole glucosinolate activation (intact plant cell) | 12 | 3 | 1 |
| camalexin biosynthesis | 12 | 2 | 1 |