Experiment set17IT024 for Pseudomonas stutzeri RCH2

Compare to:

LB with Cholin acetate 40 mM

200 most important genes:

  gene name fitness t score description  
Psest_3317 -4.7 -6.2 Phosphotransferase System HPr (HPr) Family compare
Psest_0309 -4.2 -1.8 RND family efflux transporter, MFP subunit compare
Psest_3862 -4.0 -16.6 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3960 -3.7 -1.8 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0867 -3.5 -2.6 hypothetical protein compare
Psest_2872 -3.5 -2.9 protein RecA compare
Psest_1663 -3.3 -4.0 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3226 -3.0 -1.3 Predicted membrane protein compare
Psest_3247 -3.0 -2.0 Uncharacterized membrane protein compare
Psest_0028 -2.9 -5.9 Coproporphyrinogen III oxidase compare
Psest_3092 -2.9 -2.9 ribonuclease III, bacterial compare
Psest_3399 -2.7 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_3496 -2.7 -2.3 Predicted metal-binding protein compare
Psest_4274 -2.6 -3.4 hypothetical protein compare
Psest_3391 -2.6 -2.9 Uncharacterized protein conserved in bacteria compare
Psest_0737 -2.6 -1.1 Cu(I)-responsive transcriptional regulator compare
Psest_1496 -2.6 -1.7 Holliday junction DNA helicase, RuvA subunit compare
Psest_3926 -2.5 -12.8 GTP-binding protein TypA/BipA compare
Psest_0725 -2.5 -2.4 Negative regulator of beta-lactamase expression compare
Psest_0969 -2.5 -2.2 transcription elongation factor GreA compare
Psest_1752 -2.5 -1.9 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_1087 -2.5 -1.1 uncharacterized peroxidase-related enzyme compare
Psest_0542 -2.4 -9.9 AMP nucleosidase compare
Psest_2520 -2.3 -2.2 Predicted SAM-dependent methyltransferase compare
Psest_4103 -2.3 -2.0 AraC-type DNA-binding domain-containing proteins compare
Psest_0164 -2.3 -1.0 Glutaredoxin, GrxC family compare
Psest_3351 -2.2 -6.0 peptide chain release factor 3 compare
Psest_4098 -2.1 -3.7 Superfamily I DNA and RNA helicases compare
Psest_1660 -2.1 -2.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3231 -2.1 -2.3 hypothetical protein compare
Psest_2946 -2.0 -3.3 septum site-determining protein MinD compare
Psest_1991 -2.0 -9.5 Glutathione S-transferase compare
Psest_4191 -2.0 -3.7 Transcriptional regulator compare
Psest_1012 -1.9 -5.0 Signal transduction histidine kinase compare
Psest_0191 -1.9 -1.0 PAS domain S-box compare
Psest_2945 -1.9 -1.6 septum site-determining protein MinC compare
Psest_3128 -1.9 -4.0 Protein-disulfide isomerase compare
Psest_0031 -1.9 -2.0 Uncharacterized conserved protein compare
Psest_2025 -1.8 -1.0 cold shock domain protein CspD compare
Psest_1486 -1.8 -3.2 hypothetical protein compare
Psest_0417 -1.7 -2.0 Acyl-CoA dehydrogenases compare
Psest_2101 -1.7 -2.0 hypothetical protein compare
Psest_0498 -1.7 -1.6 ribosome small subunit-dependent GTPase A compare
Psest_0398 -1.7 -4.0 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_3151 -1.7 -3.4 hypothetical protein compare
Psest_3100 -1.6 -1.1 RNA polymerase sigma factor RpoE compare
Psest_3301 -1.6 -1.8 Predicted transcriptional regulator, BolA superfamily compare
Psest_0515 -1.6 -3.9 rare lipoprotein A compare
Psest_1082 -1.6 -1.9 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3129 -1.6 -1.2 tyrosine recombinase XerD compare
Psest_2243 -1.6 -1.2 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1709 -1.6 -3.0 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0442 -1.6 -2.7 ATPases of the AAA+ class compare
Psest_2324 -1.5 -10.0 hypothetical protein compare
Psest_0449 -1.5 -7.2 Glutamine synthetase adenylyltransferase compare
Psest_0998 -1.5 -2.4 poly(A) polymerase compare
Psest_1804 -1.5 -2.0 Superfamily II DNA and RNA helicases compare
Psest_1686 -1.5 -4.0 fatty acid/phospholipid synthesis protein PlsX compare
Psest_4335 -1.5 -2.2 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_1540 -1.5 -1.6 biotin-dependent carboxylase uncharacterized domain compare
Psest_1990 -1.5 -1.7 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Psest_1659 -1.4 -2.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_4128 -1.4 -1.7 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1870 -1.4 -1.2 Transcriptional regulators compare
Psest_1814 -1.3 -7.2 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1532 -1.3 -3.1 DNA recombination-dependent growth factor C compare
Psest_3670 -1.3 -6.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_2651 -1.3 -3.0 DNA topoisomerase I, bacterial compare
Psest_3306 -1.3 -5.5 conserved hypothetical integral membrane protein compare
Psest_0697 -1.3 -2.1 ribosomal protein L9 compare
Psest_0292 -1.3 -2.5 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_3060 -1.3 -3.1 hypothetical protein compare
Psest_3377 -1.2 -1.0 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_0078 -1.2 -1.0 hypothetical protein compare
Psest_0722 -1.2 -5.7 Predicted ATPase compare
Psest_2712 -1.2 -3.3 Surface lipoprotein compare
Psest_4051 -1.2 -2.2 molybdenum-pterin binding domain compare
Psest_2771 -1.2 -2.9 Predicted membrane protein compare
Psest_3756 -1.2 -1.7 hypothetical protein compare
Psest_2023 -1.2 -2.4 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_3878 -1.2 -1.9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2538 -1.2 -1.1 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_2018 -1.2 -2.4 Uncharacterized conserved protein compare
Psest_2773 -1.2 -4.7 glycerol kinase compare
Psest_2285 -1.2 -3.0 ATP-dependent protease La compare
Psest_2981 -1.2 -1.6 sodium pump decarboxylases, gamma subunit compare
Psest_3230 -1.2 -4.1 Uncharacterized conserved protein compare
Psest_3745 -1.2 -2.5 Uncharacterized enzyme of heme biosynthesis compare
Psest_3002 -1.2 -1.5 Putative translation initiation inhibitor, yjgF family compare
Psest_2530 -1.1 -3.6 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_3270 -1.1 -1.6 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_3522 -1.1 -3.7 3-hydroxybutyrate dehydrogenase compare
Psest_1466 -1.1 -2.5 transcriptional regulator, Spx/MgsR family compare
Psest_2446 -1.1 -1.9 acetyl-CoA acetyltransferases compare
Psest_2091 -1.1 -3.0 Molecular chaperone (small heat shock protein) compare
Psest_4044 -1.1 -2.4 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2772 -1.1 -3.1 MIP family channel proteins compare
Psest_1772 -1.1 -2.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2894 -1.1 -2.1 addiction module antidote protein, HigA family compare
Psest_2584 -1.1 -2.1 Phosphoribosylanthranilate isomerase compare
Psest_3307 -1.1 -4.9 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3304 -1.1 -3.7 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_4243 -1.1 -1.2 type VI secretion lipoprotein, VC_A0113 family compare
Psest_2748 -1.1 -1.2 Transcriptional regulator compare
Psest_0115 -1.1 -1.0 Predicted integral membrane protein compare
Psest_0259 -1.1 -0.8 cell division ATP-binding protein FtsE compare
Psest_0740 -1.1 -1.6 Transcriptional regulator compare
Psest_2325 -1.1 -5.0 alpha-L-glutamate ligase-related protein compare
Psest_4309 -1.1 -2.6 ABC-type Mn/Zn transport systems, ATPase component compare
Psest_0466 -1.1 -2.5 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3884 -1.1 -0.8 Signal transduction histidine kinase compare
Psest_4252 -1.1 -3.5 Uncharacterized protein conserved in bacteria compare
Psest_4371 -1.0 -1.4 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_3191 -1.0 -1.8 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_1947 -1.0 -0.7 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_1065 -1.0 -1.5 hypothetical protein compare
Psest_3303 -1.0 -3.4 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3507 -1.0 -3.0 FOG: EAL domain compare
Psest_3828 -1.0 -0.9 zinc-binding alcohol dehydrogenase family protein compare
Psest_0357 -1.0 -2.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4338 -1.0 -2.8 Fe2+-dicitrate sensor, membrane component compare
Psest_4405 -1.0 -1.1 hypothetical protein compare
Psest_1103 -1.0 -2.5 GTP-binding protein YchF compare
Psest_3044 -1.0 -3.4 deoxycytidine triphosphate deaminase compare
Psest_0533 -1.0 -2.4 Sel1 repeat. compare
Psest_3780 -1.0 -2.4 Transcriptional regulator compare
Psest_0346 -1.0 -2.0 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_0103 -1.0 -2.1 triphosphoribosyl-dephospho-CoA synthase MdcB compare
Psest_2646 -1.0 -1.4 SOS regulatory protein LexA compare
Psest_1920 -1.0 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_2066 -1.0 -1.4 ABC-type uncharacterized transport system, permease component compare
Psest_3850 -1.0 -0.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2323 -1.0 -6.0 Uncharacterized protein conserved in archaea compare
Psest_0161 -1.0 -1.1 Membrane-bound metallopeptidase compare
Psest_1643 -1.0 -0.8 hypothetical protein compare
Psest_4170 -1.0 -1.2 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_3810 -1.0 -0.6 orotate phosphoribosyltransferase compare
Psest_2953 -0.9 -1.2 Histone acetyltransferase compare
Psest_0277 -0.9 -0.8 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_1111 -0.9 -2.4 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_4310 -0.9 -1.2 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_2513 -0.9 -3.0 Predicted membrane protein compare
Psest_0508 -0.9 -3.3 gamma-glutamyl phosphate reductase compare
Psest_0516 -0.9 -3.8 D-alanyl-D-alanine carboxypeptidase compare
Psest_0536 -0.9 -3.8 thiamine-phosphate pyrophosphorylase compare
Psest_0537 -0.9 -1.3 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_0175 -0.9 -3.2 Xaa-Pro aminopeptidase compare
Psest_4307 -0.9 -2.3 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_0021 -0.9 -1.9 ribosomal RNA small subunit methyltransferase RsmB compare
Psest_0193 -0.9 -0.9 conserved hypothetical protein compare
Psest_1812 -0.9 -4.8 pseudaminic acid CMP-transferase compare
Psest_4177 -0.9 -1.0 flagellar biosynthetic protein FliP compare
Psest_2061 -0.9 -1.8 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_1142 -0.9 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_2768 -0.9 -1.2 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_1230 -0.9 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_1510 -0.9 -1.9 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0531 -0.9 -4.7 Phosphate starvation-inducible protein PhoH, predicted ATPase compare
Psest_1048 -0.9 -4.7 Uncharacterized paraquat-inducible protein A compare
Psest_3305 -0.9 -4.2 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_4363 -0.9 -3.6 ATPases involved in chromosome partitioning compare
Psest_0958 -0.9 -3.6 Oligoketide cyclase/lipid transport protein compare
Psest_2613 -0.9 -1.1 hypothetical protein compare
Psest_1166 -0.8 -1.0 transcriptional regulator, ArgP family compare
Psest_2425 -0.8 -1.3 Trk-type K+ transport systems, membrane components compare
Psest_1037 -0.8 -1.9 acetolactate synthase, small subunit compare
Psest_0275 -0.8 -1.8 Protein of unknown function (DUF3392). compare
Psest_4325 -0.8 -1.4 hypothetical protein compare
Psest_0770 -0.8 -2.2 alkylphosphonate utilization operon protein PhnA compare
Psest_1371 -0.8 -3.0 hypothetical protein compare
Psest_0390 -0.8 -1.4 Short-chain dehydrogenases of various substrate specificities compare
Psest_1367 -0.8 -2.3 hypothetical protein compare
Psest_2308 -0.8 -0.7 Predicted Fe-S protein compare
Psest_1226 -0.8 -1.6 hypothetical protein compare
Psest_1736 -0.8 -1.7 Cu/Zn superoxide dismutase compare
Psest_3790 -0.8 -4.5 Cytochrome c5 compare
Psest_3546 -0.8 -0.8 Phosphatidylglycerophosphatase A and related proteins compare
Psest_3922 -0.8 -2.0 Response regulator of citrate/malate metabolism compare
Psest_2724 -0.8 -1.2 hypothetical protein compare
Psest_1284 -0.8 -2.2 exodeoxyribonuclease VII, large subunit compare
Psest_1813 -0.8 -4.6 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3422 -0.8 -2.0 hypothetical protein compare
Psest_2791 -0.8 -1.4 hypothetical protein compare
Psest_2150 -0.8 -1.4 DNA polymerase LigD, polymerase domain compare
Psest_1679 -0.8 -0.6 ribonuclease, Rne/Rng family compare
Psest_2322 -0.8 -2.0 Transcriptional regulators compare
Psest_2527 -0.8 -3.3 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_1506 -0.8 -3.1 queuosine biosynthesis protein QueC compare
Psest_4256 -0.8 -1.6 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_4010 -0.8 -0.6 peroxiredoxin, OsmC subfamily compare
Psest_4241 -0.7 -2.7 hypothetical protein compare
Psest_3784 -0.7 -1.2 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_0514 -0.7 -2.8 lytic murein transglycosylase B compare
Psest_3895 -0.7 -2.6 hypothetical protein compare
Psest_1843 -0.7 -1.3 Uncharacterized Fe-S protein compare
Psest_2719 -0.7 -1.3 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_2531 -0.7 -4.6 cytochrome c oxidase accessory protein FixG compare
Psest_2901 -0.7 -1.1 hypothetical protein compare
Psest_3932 -0.7 -3.0 nitrogen regulation protein NR(I) compare
Psest_3064 -0.7 -1.0 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Cholin acetate in Pseudomonas stutzeri RCH2

For stress Cholin acetate across organisms