Experiment set17IT023 for Pseudomonas stutzeri RCH2

Compare to:

LB with Choline chloride 90 mM

200 most important genes:

  gene name fitness t score description  
Psest_2232 -4.2 -14.9 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_1103 -4.1 -4.5 GTP-binding protein YchF compare
Psest_0309 -4.0 -1.7 RND family efflux transporter, MFP subunit compare
Psest_1496 -4.0 -1.7 Holliday junction DNA helicase, RuvA subunit compare
Psest_3720 -3.9 -22.2 penicillin-binding protein, 1A family compare
Psest_2712 -3.8 -5.8 Surface lipoprotein compare
Psest_2095 -3.8 -11.2 Arabinose efflux permease compare
Psest_3304 -3.7 -7.1 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_2304 -3.6 -1.3 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1486 -3.6 -3.8 hypothetical protein compare
Psest_2312 -3.6 -11.3 Small-conductance mechanosensitive channel compare
Psest_4078 -3.5 -2.9 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3862 -3.5 -15.0 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3306 -3.5 -6.6 conserved hypothetical integral membrane protein compare
Psest_3305 -3.5 -9.4 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_2308 -3.4 -1.2 Predicted Fe-S protein compare
Psest_0993 -3.3 -9.4 Glucose-6-phosphate isomerase compare
Psest_2066 -3.3 -1.4 ABC-type uncharacterized transport system, permease component compare
Psest_3047 -3.2 -1.1 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_2634 -3.1 -6.0 glycine betaine aldehyde dehydrogenase conserved
Psest_3962 -3.1 -1.9 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_0193 -3.0 -1.4 conserved hypothetical protein compare
Psest_0466 -3.0 -4.8 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3307 -3.0 -9.1 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1491 -3.0 -3.3 Cold shock proteins compare
Psest_0259 -2.9 -1.4 cell division ATP-binding protein FtsE compare
Psest_3458 -2.9 -3.5 hypothetical protein compare
Psest_0725 -2.7 -2.4 Negative regulator of beta-lactamase expression compare
Psest_4219 -2.7 -3.4 DNA polymerase I compare
Psest_1505 -2.6 -2.3 Organic radical activating enzymes compare
Psest_2018 -2.6 -3.5 Uncharacterized conserved protein compare
Psest_0310 -2.5 -3.8 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3816 -2.5 -1.2 DNA-directed RNA polymerase, omega subunit compare
Psest_1532 -2.5 -4.9 DNA recombination-dependent growth factor C compare
Psest_1473 -2.5 -6.1 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0257 -2.4 -1.8 Predicted Zn-dependent peptidases compare
Psest_1111 -2.4 -3.8 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_1840 -2.3 -19.0 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_3565 -2.3 -1.7 hypothetical protein compare
Psest_4201 -2.3 -2.1 general secretion pathway protein F compare
Psest_3317 -2.3 -4.1 Phosphotransferase System HPr (HPr) Family compare
Psest_3303 -2.3 -5.4 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2775 -2.2 -3.0 Glycerol-3-phosphate dehydrogenase compare
Psest_1837 -2.2 -6.4 Endoglucanase compare
Psest_0078 -2.2 -1.4 hypothetical protein compare
Psest_1013 -2.2 -2.6 phosphoribosylamine--glycine ligase compare
Psest_1679 -2.2 -2.1 ribonuclease, Rne/Rng family compare
Psest_3084 -2.2 -2.2 methyltransferase, putative compare
Psest_2977 -2.2 -6.6 hypothetical protein compare
Psest_1804 -2.2 -1.5 Superfamily II DNA and RNA helicases compare
Psest_2714 -2.1 -2.2 7-cyano-7-deazaguanine reductase compare
Psest_1601 -2.1 -2.1 Signal transduction histidine kinase compare
Psest_2579 -2.0 -5.3 amidophosphoribosyltransferase compare
Psest_1535 -2.0 -3.6 FKBP-type peptidyl-prolyl cis-trans isomerases 1 conserved
Psest_3177 -2.0 -2.2 hypothetical protein compare
Psest_2561 -2.0 -1.0 hypothetical protein compare
Psest_0355 -2.0 -2.0 Glycine cleavage system regulatory protein compare
Psest_1692 -2.0 -7.8 conserved hypothetical protein, YceG family compare
Psest_2465 -1.9 -4.8 hypothetical protein compare
Psest_4325 -1.9 -2.6 hypothetical protein compare
Psest_1283 -1.9 -3.1 Membrane proteins related to metalloendopeptidases compare
Psest_0719 -1.9 -6.0 Uncharacterized protein conserved in bacteria compare
Psest_1940 -1.9 -4.0 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_2110 -1.9 -2.9 hypothetical protein compare
Psest_2946 -1.9 -2.8 septum site-determining protein MinD compare
Psest_3351 -1.9 -5.3 peptide chain release factor 3 compare
Psest_1986 -1.9 -1.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_1335 -1.9 -10.5 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) compare
Psest_2025 -1.9 -0.9 cold shock domain protein CspD compare
Psest_2633 -1.8 -8.8 choline dehydrogenase conserved
Psest_3129 -1.8 -1.2 tyrosine recombinase XerD compare
Psest_1506 -1.8 -5.1 queuosine biosynthesis protein QueC compare
Psest_0558 -1.8 -0.9 urease, beta subunit compare
Psest_1472 -1.7 -6.3 Protein of unknown function (DUF3108). compare
Psest_0814 -1.7 -2.0 MoxR-like ATPases compare
Psest_4099 -1.7 -10.8 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component compare
Psest_3745 -1.7 -1.8 Uncharacterized enzyme of heme biosynthesis compare
Psest_3145 -1.7 -1.2 hypothetical protein compare
Psest_2067 -1.7 -1.2 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0461 -1.7 -5.0 Glycosyltransferase involved in LPS biosynthesis compare
Psest_1752 -1.7 -1.4 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_1772 -1.7 -3.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_4310 -1.7 -1.6 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_0846 -1.6 -2.4 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_3212 -1.6 -3.5 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1815 -1.6 -9.7 pseudaminic acid synthase compare
Psest_0442 -1.6 -2.4 ATPases of the AAA+ class compare
Psest_2538 -1.6 -1.3 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_4183 -1.6 -1.8 PilZ domain. compare
Psest_2748 -1.6 -1.6 Transcriptional regulator compare
Psest_1504 -1.6 -3.4 tol-pal system protein YbgF compare
Psest_3828 -1.6 -1.3 zinc-binding alcohol dehydrogenase family protein compare
Psest_3550 -1.6 -2.4 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_0852 -1.5 -4.8 glucose-6-phosphate 1-dehydrogenase compare
Psest_0449 -1.5 -6.4 Glutamine synthetase adenylyltransferase compare
Psest_1709 -1.5 -2.0 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1421 -1.5 -3.1 Glutathione S-transferase compare
Psest_3128 -1.5 -2.9 Protein-disulfide isomerase compare
Psest_0083 -1.5 -1.6 Uncharacterized conserved protein compare
Psest_1819 -1.4 -11.4 Nucleoside-diphosphate-sugar epimerases compare
Psest_1062 -1.4 -3.6 Carbonic anhydrase compare
Psest_0718 -1.4 -2.8 nicotinate-nucleotide pyrophosphorylase compare
Psest_0459 -1.4 -7.8 Predicted carbamoyl transferase, NodU family compare
Psest_2470 -1.4 -2.3 hypothetical protein compare
Psest_3031 -1.4 -0.7 hypothetical protein compare
Psest_3927 -1.4 -4.3 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_2768 -1.4 -1.6 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_0844 -1.4 -2.8 High-affinity Fe2+/Pb2+ permease compare
Psest_0417 -1.4 -1.9 Acyl-CoA dehydrogenases compare
Psest_4008 -1.4 -8.8 PAS domain S-box compare
Psest_1567 -1.4 -3.0 Transcriptional regulator compare
Psest_1868 -1.4 -3.4 yecA family protein compare
Psest_3433 -1.4 -3.9 ATP-binding cassette protein, ChvD family compare
Psest_3766 -1.4 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_1595 -1.4 -1.1 Copper chaperone compare
Psest_3456 -1.4 -1.4 RNA polymerase sigma factor, sigma-70 family compare
Psest_0870 -1.4 -6.3 Alpha-glucosidase (EC 3.2.1.20) (from data) compare
Psest_1574 -1.3 -2.5 phenazine biosynthesis protein PhzF family compare
Psest_0165 -1.3 -2.8 protein-export chaperone SecB compare
Psest_3960 -1.3 -1.0 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1510 -1.3 -2.6 Putative Zn-dependent protease, contains TPR repeats compare
Psest_4098 -1.3 -2.8 Superfamily I DNA and RNA helicases compare
Psest_0172 -1.3 -3.7 Uncharacterized protein conserved in bacteria compare
Psest_3042 -1.3 -1.0 Nitrate reductase cytochrome c-type subunit compare
Psest_1822 -1.3 -4.9 Glycosyltransferases involved in cell wall biogenesis compare
Psest_3921 -1.3 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_1704 -1.3 -0.9 Dehydrogenases (flavoproteins) compare
Psest_3988 -1.3 -4.6 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_3148 -1.3 -0.9 hypothetical protein compare
Psest_0843 -1.3 -6.2 hypothetical protein compare
Psest_0717 -1.3 -7.9 Protein of unknown function (DUF1631). compare
Psest_1177 -1.3 -3.4 pyruvate kinase compare
Psest_0660 -1.3 -2.4 Methyl-accepting chemotaxis protein compare
Psest_3270 -1.3 -1.5 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_1147 -1.2 -3.5 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0398 -1.2 -4.9 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_4044 -1.2 -1.7 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1951 -1.2 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_2458 -1.2 -2.5 MoxR-like ATPases compare
Psest_4280 -1.2 -2.3 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_0277 -1.2 -1.0 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_0061 -1.2 -1.8 hypothetical protein compare
Psest_0281 -1.2 -4.9 Dynamin family. compare
Psest_3775 -1.2 -4.0 Mg chelatase-related protein compare
Psest_1661 -1.2 -1.4 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1724 -1.2 -3.1 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0514 -1.2 -4.0 lytic murein transglycosylase B compare
Psest_0028 -1.2 -3.9 Coproporphyrinogen III oxidase compare
Psest_0462 -1.2 -10.5 Lipid A core - O-antigen ligase and related enzymes compare
Psest_0311 -1.2 -3.9 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_0485 -1.2 -2.2 clan AA aspartic protease, TIGR02281 family compare
Psest_3159 -1.2 -4.5 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0455 -1.2 -4.6 ADP-heptose:LPS heptosyltransferase compare
Psest_3168 -1.2 -1.4 Molybdopterin converting factor, large subunit compare
Psest_2333 -1.2 -0.7 Protein of unknown function (DUF3359). compare
Psest_2115 -1.2 -4.4 ATPase components of ABC transporters with duplicated ATPase domains compare
Psest_0276 -1.1 -3.6 putative oxygen-independent coproporphyrinogen III oxidase compare
Psest_3174 -1.1 -8.2 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_4191 -1.1 -2.4 Transcriptional regulator compare
Psest_1818 -1.1 -6.2 GDP-mannose 4,6-dehydratase compare
Psest_2756 -1.1 -0.9 hypothetical protein compare
Psest_0999 -1.1 -1.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1849 -1.1 -3.4 Predicted glutamine amidotransferase compare
Psest_2651 -1.1 -2.2 DNA topoisomerase I, bacterial compare
Psest_1417 -1.1 -0.9 hypothetical protein compare
Psest_4287 -1.1 -4.2 Predicted glutamine amidotransferases compare
Psest_1179 -1.1 -1.3 2-hydroxy-3-oxopropionate reductase compare
Psest_0212 -1.1 -1.5 exodeoxyribonuclease V, gamma subunit compare
Psest_1053 -1.1 -2.0 hypothetical protein compare
Psest_2945 -1.1 -1.1 septum site-determining protein MinC compare
Psest_3693 -1.1 -1.6 Glycosyltransferases involved in cell wall biogenesis compare
Psest_1952 -1.1 -3.0 hypothetical protein compare
Psest_1939 -1.1 -4.4 Tetratricopeptide repeat. compare
Psest_3926 -1.1 -5.8 GTP-binding protein TypA/BipA compare
Psest_1632 -1.1 -1.9 Predicted permeases compare
Psest_2791 -1.1 -1.2 hypothetical protein compare
Psest_3467 -1.1 -3.6 PAP2 (acid phosphatase) superfamily protein compare
Psest_2293 -1.1 -0.7 hypothetical protein compare
Psest_1922 -1.1 -4.4 aminopeptidase N, Escherichia coli type compare
Psest_3048 -1.1 -1.8 hypothetical protein compare
Psest_3910 -1.1 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_4256 -1.1 -2.0 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0359 -1.0 -1.8 Transcriptional regulators compare
Psest_4320 -1.0 -5.4 Zn-dependent oligopeptidases compare
Psest_0464 -1.0 -7.2 Mannosyltransferase OCH1 and related enzymes compare
Psest_3659 -1.0 -2.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1464 -1.0 -3.9 Selenocysteine lyase compare
Psest_2278 -1.0 -2.4 coenzyme PQQ biosynthesis protein PqqD compare
Psest_2285 -1.0 -2.5 ATP-dependent protease La compare
Psest_2899 -1.0 -1.0 hypothetical protein compare
Psest_3936 -1.0 -2.9 ATP-dependent protease HslVU, peptidase subunit compare
Psest_4154 -1.0 -3.7 flagella basal body P-ring formation protein FlgA compare
Psest_1681 -1.0 -2.8 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_0422 -1.0 -3.5 Site-specific recombinase XerD compare
Psest_3727 -1.0 -2.8 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_2085 -1.0 -3.3 Periplasmic serine proteases (ClpP class) compare
Psest_3691 -1.0 -3.7 Predicted membrane protein compare
Psest_1823 -1.0 -5.3 Nucleoside-diphosphate-sugar epimerases compare
Psest_2023 -1.0 -1.7 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_3015 -1.0 -3.1 hypothetical protein compare


Specific Phenotypes

For 16 genes in this experiment

For stress Choline chloride in Pseudomonas stutzeri RCH2

For stress Choline chloride across organisms