Experiment set17IT022 for Pseudomonas fluorescens SBW25-INTG

Compare to:

4-Hydroxybenzoic Acid (C) 2.5 mM

200 most important genes:

  gene name fitness t score description  
PFLU_RS28695 -5.1 -5.0 phosphoglycerate dehydrogenase compare
PFLU_RS28385 -4.2 -10.8 homoserine O-acetyltransferase compare
PFLU_RS01620 -3.9 -5.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS28390 -3.8 -9.1 methionine biosynthesis protein MetW compare
PFLU_RS25360 -3.8 -7.2 glutamate 5-kinase compare
PFLU_RS20575 -3.8 -6.3 3-isopropylmalate dehydratase small subunit compare
PFLU_RS01605 -3.6 -6.5 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS20580 -3.5 -11.5 3-isopropylmalate dehydratase large subunit compare
PFLU_RS04470 -3.5 -8.5 histidinol dehydrogenase compare
PFLU_RS28535 -3.5 -14.4 dihydroxy-acid dehydratase compare
PFLU_RS08125 -3.5 -3.4 integration host factor subunit beta compare
PFLU_RS20565 -3.3 -14.1 3-isopropylmalate dehydrogenase compare
PFLU_RS13120 -3.2 -2.7 hypothetical protein compare
PFLU_RS04465 -3.1 -8.1 ATP phosphoribosyltransferase compare
PFLU_RS27370 -3.1 -11.9 anthranilate phosphoribosyltransferase compare
PFLU_RS28165 -3.1 -10.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS01900 -3.1 -6.6 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS20510 -3.1 -12.5 O-succinylhomoserine sulfhydrylase compare
PFLU_RS20540 -3.0 -10.4 phosphoribosylanthranilate isomerase compare
PFLU_RS00415 -3.0 -2.0 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS25640 -3.0 -12.9 ketol-acid reductoisomerase compare
PFLU_RS00180 -2.9 -6.9 tryptophan synthase subunit beta compare
PFLU_RS20515 -2.9 -3.9 amidophosphoribosyltransferase compare
PFLU_RS00275 -2.8 -8.3 carbonic anhydrase compare
PFLU_RS25645 -2.8 -3.3 acetolactate synthase small subunit compare
PFLU_RS27365 -2.8 -10.1 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS02590 -2.8 -8.4 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS01610 -2.6 -10.3 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS28655 -2.5 -12.0 HAD family hydrolase compare
PFLU_RS12975 -2.5 -5.2 DUF934 domain-containing protein compare
PFLU_RS08660 -2.5 -2.4 heme exporter protein CcmD compare
PFLU_RS04385 -2.5 -7.4 RNase adapter RapZ compare
PFLU_RS23070 -2.5 -1.5 50S ribosomal protein L32 compare
PFLU_RS17950 -2.5 -2.0 hypothetical protein compare
PFLU_RS00435 -2.4 -14.1 PAS domain-containing protein compare
PFLU_RS01875 -2.4 -1.4 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS00175 -2.4 -7.5 tryptophan synthase subunit alpha compare
PFLU_RS21985 -2.3 -4.3 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS09055 -2.3 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS00870 -2.2 -1.9 hypothetical protein compare
PFLU_RS08665 -2.2 -3.8 cytochrome c maturation protein CcmE compare
PFLU_RS26565 -2.1 -2.4 rRNA maturation RNase YbeY compare
PFLU_RS19165 -2.1 -3.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS12980 -2.1 -8.0 nitrite/sulfite reductase compare
PFLU_RS24765 -2.1 -15.4 2-isopropylmalate synthase compare
PFLU_RS18395 -2.1 -1.9 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS22190 -2.1 -1.7 hypothetical protein compare
PFLU_RS06735 -2.0 -5.9 3-oxoadipyl-CoA thiolase compare
PFLU_RS05750 -2.0 -2.0 methionine--tRNA ligase compare
PFLU_RS18505 -2.0 -8.0 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS25715 -2.0 -5.8 RNA polymerase-binding protein DksA compare
PFLU_RS05690 -1.9 -1.3 Grx4 family monothiol glutaredoxin compare
PFLU_RS20290 -1.9 -2.2 integration host factor subunit alpha compare
PFLU_RS17920 -1.9 -1.8 acyltransferase compare
PFLU_RS24095 -1.9 -2.5 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS19015 -1.9 -6.6 anti-sigma factor compare
PFLU_RS27650 -1.9 -11.4 biotin synthase BioB compare
PFLU_RS01645 -1.9 -8.2 S41 family peptidase compare
PFLU_RS19170 -1.8 -1.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS15410 -1.8 -1.7 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS27475 -1.8 -4.8 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS24090 -1.8 -4.1 Holliday junction branch migration protein RuvA compare
PFLU_RS21495 -1.8 -1.2 TlpA family protein disulfide reductase compare
PFLU_RS29515 -1.8 -9.1 RidA family protein compare
PFLU_RS08735 -1.8 -2.1 histidine phosphatase family protein compare
PFLU_RS01955 -1.8 -6.4 DUF971 domain-containing protein compare
PFLU_RS01895 -1.8 -5.6 phosphoribosyl-ATP diphosphatase compare
PFLU_RS21425 -1.7 -3.4 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS06730 -1.7 -7.7 CoA-transferase subunit beta compare
PFLU_RS07435 -1.7 -9.1 4-hydroxybenzoate 3-monooxygenase compare
PFLU_RS20730 -1.7 -2.2 hypothetical protein compare
PFLU_RS22095 -1.7 -10.8 GTP diphosphokinase compare
PFLU_RS01625 -1.7 -1.6 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS12660 -1.6 -5.1 hypothetical protein compare
PFLU_RS10090 -1.6 -1.9 redox-sensitive transcriptional activator SoxR compare
PFLU_RS06740 -1.6 -7.2 protocatechuate 3,4-dioxygenase subunit beta compare
PFLU_RS06715 -1.6 -7.9 IclR family transcriptional regulator compare
PFLU_RS08670 -1.6 -4.4 heme lyase CcmF/NrfE family subunit compare
PFLU_RS06755 -1.5 -7.1 3-carboxy-cis,cis-muconate cycloisomerase compare
PFLU_RS22105 -1.5 -4.1 cysteine synthase CysM compare
PFLU_RS03645 -1.5 -6.7 tetratricopeptide repeat protein compare
PFLU_RS00705 -1.5 -8.6 FUSC family protein conserved
PFLU_RS21740 -1.5 -4.6 Hpt domain-containing protein compare
PFLU_RS23920 -1.5 -2.0 septation protein A compare
PFLU_RS00445 -1.5 -2.2 hypothetical protein compare
PFLU_RS04660 -1.5 -4.7 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS06725 -1.5 -7.0 CoA transferase subunit A compare
PFLU_RS25790 -1.5 -4.1 polyribonucleotide nucleotidyltransferase compare
PFLU_RS29885 -1.4 -7.7 LysR family transcriptional regulator compare
PFLU_RS13010 -1.4 -3.9 Fe-S biogenesis protein NfuA compare
PFLU_RS27645 -1.4 -9.4 8-amino-7-oxononanoate synthase compare
PFLU_RS05780 -1.4 -7.6 helix-turn-helix transcriptional regulator compare
PFLU_RS18005 -1.4 -2.8 acyl-CoA/acyl-ACP dehydrogenase compare
PFLU_RS14210 -1.4 -2.9 TetR/AcrR family transcriptional regulator compare
PFLU_RS02490 -1.4 -8.3 phosphoserine phosphatase SerB compare
PFLU_RS17195 -1.4 -2.5 acyl dehydratase compare
PFLU_RS22070 -1.4 -3.1 phosphoribosylglycinamide formyltransferase compare
PFLU_RS04740 -1.4 -3.4 hypothetical protein compare
PFLU_RS21965 -1.4 -9.5 transporter compare
PFLU_RS26390 -1.4 -7.0 metallopeptidase compare
PFLU_RS28325 -1.4 -4.9 energy transducer TonB compare
PFLU_RS30660 -1.4 -2.8 histidine phosphatase family protein compare
PFLU_RS25735 -1.4 -2.7 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS13965 -1.3 -3.0 hypothetical protein compare
PFLU_RS02790 -1.3 -1.1 TetR family transcriptional regulator compare
PFLU_RS04930 -1.3 -7.8 PhoH family protein compare
PFLU_RS06055 -1.3 -1.9 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS09980 -1.3 -9.0 peptidase S41 compare
PFLU_RS12175 -1.3 -1.4 methyl-accepting chemotaxis protein compare
PFLU_RS06630 -1.3 -3.2 ABC transporter ATP-binding protein compare
PFLU_RS18805 -1.3 -1.8 ABC transporter ATP-binding protein compare
PFLU_RS23310 -1.3 -5.9 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS16785 -1.3 -1.6 GAF domain-containing protein compare
PFLU_RS23065 -1.3 -6.3 phosphate acyltransferase PlsX compare
PFLU_RS14050 -1.3 -1.4 hypothetical protein compare
PFLU_RS08505 -1.3 -4.8 protease HtpX compare
PFLU_RS26545 -1.3 -6.2 sel1 repeat family protein compare
PFLU_RS24085 -1.3 -2.9 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS27465 -1.3 -2.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS28195 -1.2 -8.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS02670 -1.2 -2.2 hypothetical protein compare
PFLU_RS01095 -1.2 -2.5 ribbon-helix-helix protein, CopG family compare
PFLU_RS24125 -1.2 -1.4 cold-shock protein compare
PFLU_RS07255 -1.2 -2.9 sulfurtransferase TusA family protein compare
PFLU_RS21665 -1.2 -3.8 MinD/ParA family protein compare
PFLU_RS06765 -1.2 -4.1 4-carboxymuconolactone decarboxylase compare
PFLU_RS03665 -1.2 -3.8 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS22010 -1.2 -4.8 threonine-phosphate decarboxylase compare
PFLU_RS29095 -1.2 -10.1 polyphosphate kinase 1 compare
PFLU_RS22740 -1.2 -3.3 phosphoadenylyl-sulfate reductase compare
PFLU_RS00720 -1.2 -6.0 efflux transporter outer membrane subunit conserved
PFLU_RS07640 -1.2 -6.1 universal stress protein compare
PFLU_RS30345 -1.2 -2.1 DUF2559 family protein compare
PFLU_RS25225 -1.2 -5.1 disulfide bond formation protein B compare
PFLU_RS00710 -1.2 -8.4 DUF1656 domain-containing protein compare
PFLU_RS29755 -1.2 -7.3 phosphate ABC transporter ATP-binding protein compare
PFLU_RS01005 -1.2 -1.5 ABC transporter ATP-binding protein compare
PFLU_RS26735 -1.2 -4.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS29880 -1.2 -7.4 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS13035 -1.2 -2.3 cobalamin biosynthesis protein CobW compare
PFLU_RS03830 -1.2 -2.8 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS31610 -1.2 -4.0 putative transporter-like protein compare
PFLU_RS11285 -1.2 -3.3 hypothetical protein compare
PFLU_RS07665 -1.2 -2.3 type I DNA topoisomerase compare
PFLU_RS29765 -1.2 -9.2 ABC transporter permease subunit compare
PFLU_RS22030 -1.2 -2.3 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
PFLU_RS07430 -1.2 -6.4 helix-turn-helix domain-containing protein compare
PFLU_RS29275 -1.2 -3.6 DUF484 family protein compare
PFLU_RS23380 -1.1 -1.5 HAD-IB family hydrolase compare
PFLU_RS24025 -1.1 -6.7 quinolinate synthase NadA compare
PFLU_RS20700 -1.1 -6.1 DNA/RNA non-specific endonuclease compare
PFLU_RS20690 -1.1 -2.4 hypothetical protein compare
PFLU_RS08675 -1.1 -2.0 DsbE family thiol:disulfide interchange protein compare
PFLU_RS25585 -1.1 -1.0 exodeoxyribonuclease V subunit alpha compare
PFLU_RS18705 -1.1 -2.7 hypothetical protein compare
PFLU_RS13540 -1.1 -1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS10835 -1.1 -2.2 enoyl-CoA hydratase/isomerase family protein compare
PFLU_RS14305 -1.1 -1.8 sensor histidine kinase compare
PFLU_RS04780 -1.1 -1.5 hypothetical protein compare
PFLU_RS00070 -1.1 -1.6 tetratricopeptide repeat protein compare
PFLU_RS30030 -1.1 -1.0 membrane protein compare
PFLU_RS04530 -1.1 -2.0 hypothetical protein compare
PFLU_RS26290 -1.1 -0.8 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS18675 -1.1 -2.0 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS00715 -1.1 -7.2 efflux RND transporter periplasmic adaptor subunit compare
PFLU_RS25210 -1.1 -3.5 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS23100 -1.1 -2.9 ribonuclease E compare
PFLU_RS25875 -1.1 -2.3 transcription elongation factor GreA compare
PFLU_RS31010 -1.1 -0.9 transposase compare
PFLU_RS07650 -1.1 -7.0 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS07695 -1.0 -2.4 beta-N-acetylhexosaminidase compare
PFLU_RS27630 -1.0 -3.6 dethiobiotin synthase compare
PFLU_RS03240 -1.0 -7.0 copper-translocating P-type ATPase compare
PFLU_RS01660 -1.0 -2.0 rhodanese-like domain-containing protein compare
PFLU_RS15755 -1.0 -1.4 type II secretion system protein M compare
PFLU_RS01670 -1.0 -4.1 protein-export chaperone SecB compare
PFLU_RS18670 -1.0 -1.2 NADH-quinone oxidoreductase subunit M compare
PFLU_RS23305 -1.0 -5.4 arginine N-succinyltransferase compare
PFLU_RS13580 -1.0 -3.2 ribonucleotide-diphosphate reductase subunit beta compare
PFLU_RS19375 -1.0 -5.5 branched-chain amino acid aminotransferase compare
PFLU_RS06745 -1.0 -3.5 protocatechuate 3,4-dioxygenase subunit alpha compare
PFLU_RS29750 -1.0 -3.1 phosphate signaling complex protein PhoU compare
PFLU_RS13475 -1.0 -6.9 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
PFLU_RS03970 -1.0 -5.6 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS01995 -1.0 -6.0 malate dehydrogenase compare
PFLU_RS07275 -1.0 -1.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS27635 -1.0 -4.7 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS28420 -1.0 -4.3 thiazole synthase compare
PFLU_RS30515 -1.0 -2.8 Rieske 2Fe-2S domain-containing protein compare
PFLU_RS26250 -1.0 -6.7 ferredoxin--NADP reductase compare
PFLU_RS05595 -1.0 -3.7 alpha/beta fold hydrolase compare
PFLU_RS02350 -1.0 -5.0 carbamoyltransferase compare
PFLU_RS25955 -1.0 -1.8 hypothetical protein compare
PFLU_RS19160 -1.0 -5.9 endopeptidase La compare
PFLU_RS27265 -1.0 -1.5 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor compare
PFLU_RS13750 -1.0 -0.8 hypothetical protein compare
PFLU_RS07215 -1.0 -3.9 hypothetical protein compare
PFLU_RS04220 -1.0 -4.5 FadR family transcriptional regulator compare
PFLU_RS05880 -1.0 -3.4 CinA family protein compare
PFLU_RS31830 -1.0 -1.2 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source 4-Hydroxybenzoic Acid in Pseudomonas fluorescens SBW25-INTG

For carbon source 4-Hydroxybenzoic Acid across organisms