Experiment set17IT020 for Pseudomonas stutzeri RCH2

Compare to:

LB with syringaldehyde 3 mM

200 most important genes:

  gene name fitness t score description  
Psest_3546 -3.7 -1.3 Phosphatidylglycerophosphatase A and related proteins compare
Psest_2945 -3.4 -1.8 septum site-determining protein MinC compare
Psest_0740 -3.1 -3.0 Transcriptional regulator compare
Psest_3228 -2.7 -11.1 Zn-dependent protease with chaperone function compare
Psest_1659 -2.7 -2.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1660 -2.6 -2.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_2579 -2.6 -5.6 amidophosphoribosyltransferase compare
Psest_4335 -2.6 -2.8 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_2714 -2.6 -2.8 7-cyano-7-deazaguanine reductase compare
Psest_4128 -2.5 -2.1 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_4191 -2.4 -3.7 Transcriptional regulator compare
Psest_2067 -2.4 -1.7 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0466 -2.4 -4.8 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0309 -2.3 -1.5 RND family efflux transporter, MFP subunit compare
Psest_2530 -2.2 -5.0 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_0028 -2.2 -5.4 Coproporphyrinogen III oxidase compare
Psest_0575 -2.2 -1.1 HrpA-like helicases compare
Psest_3399 -2.2 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_2651 -2.1 -4.3 DNA topoisomerase I, bacterial compare
Psest_0013 -2.1 -5.3 Lauroyl/myristoyl acyltransferase compare
Psest_2304 -2.1 -1.2 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_2585 -2.1 -1.0 pseudouridylate synthase I compare
Psest_0311 -2.1 -5.6 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_0310 -2.1 -3.8 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3304 -2.0 -6.2 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_2712 -2.0 -5.5 Surface lipoprotein compare
Psest_0457 -2.0 -3.8 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3185 -2.0 -2.1 MoxR-like ATPases compare
Psest_0191 -1.9 -0.9 PAS domain S-box compare
Psest_1295 -1.9 -6.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2724 -1.9 -3.1 hypothetical protein compare
Psest_1656 -1.9 -2.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3042 -1.8 -1.2 Nitrate reductase cytochrome c-type subunit compare
Psest_3307 -1.8 -8.0 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_4088 -1.8 -3.9 Transcriptional regulators compare
Psest_0097 -1.8 -1.7 phosphonates metabolism transcriptional regulator PhnF compare
Psest_3045 -1.8 -2.0 Cold shock proteins compare
Psest_0872 -1.8 -1.3 Helix-turn-helix. compare
Psest_3047 -1.7 -1.0 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_3306 -1.7 -5.0 conserved hypothetical integral membrane protein compare
Psest_0515 -1.7 -4.2 rare lipoprotein A compare
Psest_3780 -1.7 -4.2 Transcriptional regulator compare
Psest_1013 -1.7 -3.1 phosphoribosylamine--glycine ligase compare
Psest_3159 -1.7 -5.2 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1496 -1.7 -1.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_3322 -1.7 -11.2 TIGR02099 family protein compare
Psest_3790 -1.6 -7.9 Cytochrome c5 compare
Psest_3231 -1.6 -1.4 hypothetical protein compare
Psest_3305 -1.6 -6.0 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_1907 -1.6 -1.3 hypothetical protein compare
Psest_3301 -1.6 -2.2 Predicted transcriptional regulator, BolA superfamily compare
Psest_0514 -1.6 -5.1 lytic murein transglycosylase B compare
Psest_3168 -1.6 -1.8 Molybdopterin converting factor, large subunit compare
Psest_2001 -1.6 -1.0 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_0066 -1.5 -1.5 Protein of unknown function (DUF3060). compare
Psest_1463 -1.5 -1.0 SufE protein probably involved in Fe-S center assembly compare
Psest_3303 -1.5 -4.8 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2766 -1.5 -1.0 hypothetical protein compare
Psest_0417 -1.5 -2.0 Acyl-CoA dehydrogenases compare
Psest_1704 -1.5 -1.0 Dehydrogenases (flavoproteins) compare
Psest_0852 -1.5 -5.6 glucose-6-phosphate 1-dehydrogenase compare
Psest_1510 -1.5 -2.8 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0708 -1.5 -1.4 outer membrane assembly lipoprotein YfiO compare
Psest_2711 -1.5 -2.7 PilZ domain. compare
Psest_1814 -1.4 -9.9 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3092 -1.4 -2.0 ribonuclease III, bacterial compare
Psest_3123 -1.4 -1.4 dihydroorotase, homodimeric type compare
Psest_2757 -1.4 -1.0 hypothetical protein compare
Psest_3100 -1.4 -1.3 RNA polymerase sigma factor RpoE compare
Psest_2527 -1.4 -5.7 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_4044 -1.4 -1.3 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3190 -1.4 -4.2 pyruvate kinase compare
Psest_1601 -1.4 -1.4 Signal transduction histidine kinase compare
Psest_1657 -1.4 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_4078 -1.4 -2.0 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_0119 -1.4 -2.1 hypothetical protein compare
Psest_0521 -1.3 -6.9 lytic murein transglycosylase compare
Psest_1012 -1.3 -3.8 Signal transduction histidine kinase compare
Psest_3697 -1.3 -2.0 Outer membrane lipoprotein carrier protein LolA. compare
Psest_3070 -1.3 -2.3 3-oxoadipyl-CoA thiolase compare
Psest_2476 -1.3 -4.1 acetyl-CoA acetyltransferases compare
Psest_1230 -1.3 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_2532 -1.3 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_1241 -1.3 -5.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_3766 -1.3 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_4310 -1.2 -1.3 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_0919 -1.2 -1.0 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_3112 -1.2 -3.6 electron transport complex, RnfABCDGE type, A subunit compare
Psest_0259 -1.2 -1.1 cell division ATP-binding protein FtsE compare
Psest_2531 -1.2 -7.2 cytochrome c oxidase accessory protein FixG compare
Psest_3828 -1.2 -1.2 zinc-binding alcohol dehydrogenase family protein compare
Psest_3419 -1.2 -5.5 Predicted transcriptional regulators compare
Psest_3862 -1.2 -7.1 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3115 -1.2 -4.4 electron transport complex, RnfABCDGE type, D subunit compare
Psest_1179 -1.2 -1.3 2-hydroxy-3-oxopropionate reductase compare
Psest_1873 -1.2 -2.3 Predicted permease, DMT superfamily compare
Psest_2773 -1.2 -3.8 glycerol kinase compare
Psest_0212 -1.2 -1.7 exodeoxyribonuclease V, gamma subunit compare
Psest_0165 -1.2 -3.2 protein-export chaperone SecB compare
Psest_0442 -1.1 -2.5 ATPases of the AAA+ class compare
Psest_4142 -1.1 -1.0 hypothetical protein compare
Psest_0725 -1.1 -1.1 Negative regulator of beta-lactamase expression compare
Psest_3883 -1.1 -5.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3146 -1.1 -1.0 hypothetical protein compare
Psest_0209 -1.1 -1.5 membrane protein AbrB duplication compare
Psest_1661 -1.1 -1.6 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1774 -1.1 -1.1 Glutathione peroxidase compare
Psest_3447 -1.1 -1.3 Uncharacterized MobA-related protein compare
Psest_0063 -1.1 -4.3 tryptophan synthase, beta subunit compare
Psest_1349 -1.1 -1.7 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2775 -1.1 -2.6 Glycerol-3-phosphate dehydrogenase compare
Psest_1506 -1.0 -3.9 queuosine biosynthesis protein QueC compare
Psest_0857 -1.0 -1.2 Membrane transporters of cations and cationic drugs compare
Psest_2083 -1.0 -2.9 Putative sterol carrier protein compare
Psest_3884 -1.0 -0.8 Signal transduction histidine kinase compare
Psest_2442 -1.0 -1.3 hypothetical protein compare
Psest_3222 -1.0 -2.0 Putative threonine efflux protein compare
Psest_0149 -1.0 -2.8 nitrate ABC transporter, permease protein compare
Psest_2023 -1.0 -1.9 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_2864 -1.0 -1.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1600 -1.0 -1.6 hypothetical protein compare
Psest_1783 -1.0 -1.8 Predicted transporter component compare
Psest_3117 -1.0 -2.2 electron transport complex, RnfABCDGE type, E subunit compare
Psest_2520 -1.0 -1.3 Predicted SAM-dependent methyltransferase compare
Psest_1444 -1.0 -2.1 Curli production assembly/transport component CsgF. compare
Psest_3707 -1.0 -3.1 Transcriptional regulator compare
Psest_2048 -1.0 -1.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3039 -1.0 -1.0 periplasmic nitrate reductase, NapE protein compare
Psest_1022 -1.0 -4.1 Thiol:disulfide interchange protein compare
Psest_3351 -1.0 -3.4 peptide chain release factor 3 compare
Psest_0999 -1.0 -1.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3896 -0.9 -1.8 arsenite-activated ATPase ArsA compare
Psest_3317 -0.9 -3.0 Phosphotransferase System HPr (HPr) Family compare
Psest_1491 -0.9 -2.1 Cold shock proteins compare
Psest_4209 -0.9 -1.8 Uncharacterized conserved small protein compare
Psest_2333 -0.9 -0.6 Protein of unknown function (DUF3359). compare
Psest_0449 -0.9 -5.6 Glutamine synthetase adenylyltransferase compare
Psest_1504 -0.9 -2.6 tol-pal system protein YbgF compare
Psest_0095 -0.9 -3.1 phosphonate C-P lyase system protein PhnH compare
Psest_1655 -0.9 -2.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_2218 -0.9 -2.1 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_1610 -0.9 -2.9 hypothetical protein compare
Psest_1180 -0.9 -3.0 hydroxypyruvate isomerase compare
Psest_3647 -0.9 -3.3 Indole-3-glycerol phosphate synthase compare
Psest_2887 -0.9 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_1563 -0.9 -1.5 Protein of unknown function (DUF548). compare
Psest_4056 -0.9 -1.9 FMN reductase, SsuE family compare
Psest_3904 -0.9 -1.2 hypothetical protein compare
Psest_0062 -0.9 -4.4 tryptophan synthase, alpha subunit compare
Psest_0845 -0.9 -0.6 hypothetical protein compare
Psest_0691 -0.9 -5.4 ribonuclease R compare
Psest_4363 -0.8 -3.0 ATPases involved in chromosome partitioning compare
Psest_1518 -0.8 -1.4 tRNA_Ser_CGA compare
Psest_4307 -0.8 -1.7 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_3339 -0.8 -3.1 Signal transduction histidine kinase compare
Psest_4405 -0.8 -1.2 hypothetical protein compare
Psest_2894 -0.8 -1.7 addiction module antidote protein, HigA family compare
Psest_1261 -0.8 -3.6 Uncharacterized protein conserved in bacteria compare
Psest_0805 -0.8 -1.7 hypothetical protein compare
Psest_4314 -0.8 -2.4 ABC-type metal ion transport system, ATPase component compare
Psest_3008 -0.8 -1.7 cobyric acid synthase CobQ compare
Psest_0504 -0.8 -2.9 Putative effector of murein hydrolase LrgA compare
Psest_1574 -0.8 -1.4 phenazine biosynthesis protein PhzF family compare
Psest_4051 -0.8 -1.7 molybdenum-pterin binding domain compare
Psest_4043 -0.8 -1.5 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_0133 -0.8 -0.8 type VI secretion protein, VC_A0107 family compare
Psest_3742 -0.8 -2.3 hypothetical protein compare
Psest_2288 -0.8 -1.7 trigger factor compare
Psest_1474 -0.8 -1.4 phosphoribosylaminoimidazole synthetase compare
Psest_3991 -0.8 -1.2 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_0867 -0.8 -1.1 hypothetical protein compare
Psest_0958 -0.8 -3.6 Oligoketide cyclase/lipid transport protein compare
Psest_1744 -0.8 -3.9 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain compare
Psest_2084 -0.8 -2.3 Fructose-2,6-bisphosphatase compare
Psest_4170 -0.8 -1.1 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_3114 -0.8 -3.8 electron transport complex, RnfABCDGE type, C subunit compare
Psest_1952 -0.8 -2.6 hypothetical protein compare
Psest_2847 -0.8 -1.7 Multisubunit Na+/H+ antiporter, MnhF subunit compare
Psest_3678 -0.8 -2.3 acyl-phosphate glycerol 3-phosphate acyltransferase compare
Psest_3842 -0.8 -1.5 Transcriptional regulators compare
Psest_3878 -0.8 -1.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0770 -0.8 -2.1 alkylphosphonate utilization operon protein PhnA compare
Psest_2101 -0.8 -0.7 hypothetical protein compare
Psest_0823 -0.8 -2.0 Transcriptional regulators compare
Psest_0846 -0.8 -1.9 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_2285 -0.8 -2.1 ATP-dependent protease La compare
Psest_3492 -0.7 -1.9 hypothetical protein compare
Psest_3990 -0.7 -3.4 PAP2 superfamily. compare
Psest_0385 -0.7 -1.2 Conserved secreted protein compare
Psest_1863 -0.7 -1.0 hypothetical protein compare
Psest_0489 -0.7 -0.7 phosphoserine phosphatase SerB compare
Psest_4221 -0.7 -1.8 homoserine kinase, Neisseria type compare
Psest_0073 -0.7 -2.7 ABC-type multidrug transport system, ATPase and permease components compare
Psest_3691 -0.7 -2.7 Predicted membrane protein compare
Psest_3200 -0.7 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_4274 -0.7 -1.5 hypothetical protein compare
Psest_1242 -0.7 -1.3 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2334 -0.7 -5.1 Uncharacterized protein conserved in bacteria compare
Psest_3426 -0.7 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_0587 -0.7 -1.9 Domain of Unknown Function (DUF326). compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in stress experiments

For stress syringaldehyde across organisms