Experiment set17IT015 for Pseudomonas stutzeri RCH2

Compare to:

LB with Aluminum chloride hydrate 0.3 mM

200 most important genes:

  gene name fitness t score description  
Psest_2945 -3.4 -1.8 septum site-determining protein MinC compare
Psest_0737 -3.3 -1.1 Cu(I)-responsive transcriptional regulator compare
Psest_3465 -3.2 -6.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain conserved
Psest_3960 -3.2 -1.8 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_4338 -3.0 -6.6 Fe2+-dicitrate sensor, membrane component compare
Psest_3128 -2.9 -6.2 Protein-disulfide isomerase compare
Psest_0515 -2.9 -4.0 rare lipoprotein A compare
Psest_0725 -2.8 -2.4 Negative regulator of beta-lactamase expression compare
Psest_3462 -2.7 -6.9 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3351 -2.7 -5.7 peptide chain release factor 3 compare
Psest_0459 -2.6 -12.3 Predicted carbamoyl transferase, NodU family compare
Psest_0013 -2.6 -4.9 Lauroyl/myristoyl acyltransferase compare
Psest_0846 -2.5 -4.6 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_3322 -2.3 -15.6 TIGR02099 family protein compare
Psest_1986 -2.3 -1.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_1056 -2.2 -2.0 2-isopropylmalate synthase, bacterial type compare
Psest_3301 -2.2 -3.8 Predicted transcriptional regulator, BolA superfamily compare
Psest_4219 -2.1 -2.9 DNA polymerase I compare
Psest_0259 -2.1 -1.4 cell division ATP-binding protein FtsE compare
Psest_2946 -2.1 -3.1 septum site-determining protein MinD compare
Psest_1510 -2.1 -3.1 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3014 -2.1 -2.3 cob(I)alamin adenosyltransferase compare
Psest_1814 -2.0 -12.0 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2591 -2.0 -3.1 3-isopropylmalate dehydratase, large subunit compare
Psest_3463 -2.0 -7.0 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_0845 -2.0 -0.9 hypothetical protein compare
Psest_4405 -2.0 -2.0 hypothetical protein compare
Psest_1888 -1.9 -1.0 Sua5/YciO/YrdC/YwlC family protein compare
Psest_3146 -1.9 -1.8 hypothetical protein compare
Psest_2304 -1.9 -1.1 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0028 -1.8 -3.1 Coproporphyrinogen III oxidase compare
Psest_1471 -1.8 -5.2 Predicted membrane protein compare
Psest_3042 -1.8 -1.2 Nitrate reductase cytochrome c-type subunit compare
Psest_3177 -1.7 -2.1 hypothetical protein compare
Psest_2855 -1.7 -1.5 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1496 -1.7 -1.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_0191 -1.7 -0.7 PAS domain S-box compare
Psest_1837 -1.6 -5.9 Endoglucanase compare
Psest_1679 -1.6 -1.6 ribonuclease, Rne/Rng family compare
Psest_4274 -1.6 -2.5 hypothetical protein compare
Psest_3377 -1.6 -1.1 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1804 -1.6 -2.0 Superfamily II DNA and RNA helicases compare
Psest_0708 -1.5 -1.6 outer membrane assembly lipoprotein YfiO compare
Psest_4044 -1.5 -1.1 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2232 -1.5 -10.2 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_1631 -1.5 -1.7 Uncharacterized conserved small protein compare
Psest_2775 -1.5 -3.2 Glycerol-3-phosphate dehydrogenase compare
Psest_0257 -1.5 -2.3 Predicted Zn-dependent peptidases compare
Psest_3464 -1.5 -4.9 Signal transduction histidine kinase compare
Psest_4406 -1.5 -1.1 hypothetical protein compare
Psest_0843 -1.4 -7.8 hypothetical protein compare
Psest_1505 -1.4 -2.0 Organic radical activating enzymes compare
Psest_1920 -1.4 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_3180 -1.4 -6.8 Exonuclease I compare
Psest_2025 -1.4 -0.8 cold shock domain protein CspD compare
Psest_3496 -1.4 -1.0 Predicted metal-binding protein compare
Psest_1417 -1.3 -1.1 hypothetical protein compare
Psest_2566 -1.3 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_0260 -1.3 -1.2 Cell division protein compare
Psest_4170 -1.3 -1.5 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_1882 -1.3 -4.1 Signal transduction histidine kinase compare
Psest_0277 -1.3 -1.2 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_0442 -1.3 -2.6 ATPases of the AAA+ class compare
Psest_0533 -1.3 -3.9 Sel1 repeat. compare
Psest_1660 -1.2 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_2896 -1.2 -3.2 hypothetical protein compare
Psest_1870 -1.2 -0.9 Transcriptional regulators compare
Psest_4049 -1.2 -1.4 hypothetical protein compare
Psest_2579 -1.2 -4.3 amidophosphoribosyltransferase compare
Psest_3190 -1.2 -3.4 pyruvate kinase compare
Psest_1657 -1.2 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3100 -1.2 -1.5 RNA polymerase sigma factor RpoE compare
Psest_3048 -1.2 -1.7 hypothetical protein compare
Psest_1166 -1.2 -1.7 transcriptional regulator, ArgP family compare
Psest_0993 -1.1 -5.2 Glucose-6-phosphate isomerase compare
Psest_1457 -1.1 -1.2 FOG: Ankyrin repeat compare
Psest_4393 -1.1 -3.7 Capsule polysaccharide export protein compare
Psest_1656 -1.1 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0485 -1.1 -2.3 clan AA aspartic protease, TIGR02281 family compare
Psest_3921 -1.1 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_3361 -1.1 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_1563 -1.1 -1.9 Protein of unknown function (DUF548). compare
Psest_0119 -1.1 -1.9 hypothetical protein compare
Psest_2711 -1.1 -1.7 PilZ domain. compare
Psest_4056 -1.0 -3.1 FMN reductase, SsuE family compare
Psest_3270 -1.0 -1.2 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_0181 -1.0 -3.2 glycine cleavage system T protein compare
Psest_1259 -1.0 -3.8 23S rRNA m2A2503 methyltransferase compare
Psest_3391 -1.0 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_2590 -1.0 -0.7 3-isopropylmalate dehydratase, small subunit compare
Psest_1813 -1.0 -5.3 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3168 -1.0 -1.1 Molybdopterin converting factor, large subunit compare
Psest_0558 -1.0 -0.6 urease, beta subunit compare
Psest_1659 -1.0 -1.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_4335 -1.0 -1.4 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_3456 -1.0 -1.0 RNA polymerase sigma factor, sigma-70 family compare
Psest_1960 -1.0 -1.4 Bacterial protein of unknown function (DUF903). compare
Psest_3810 -1.0 -0.7 orotate phosphoribosyltransferase compare
Psest_2872 -1.0 -1.3 protein RecA compare
Psest_1031 -1.0 -4.7 Uncharacterized protein conserved in bacteria compare
Psest_0514 -1.0 -3.1 lytic murein transglycosylase B compare
Psest_0691 -1.0 -5.5 ribonuclease R compare
Psest_3865 -0.9 -2.3 Predicted integral membrane protein (DUF2269). compare
Psest_2532 -0.9 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_3185 -0.9 -1.2 MoxR-like ATPases compare
Psest_3202 -0.9 -2.3 Flavodoxins compare
Psest_4191 -0.9 -1.6 Transcriptional regulator compare
Psest_2096 -0.9 -1.8 Domain of unknown function (DUF1883). compare
Psest_4197 -0.9 -1.8 general secretion pathway protein J compare
Psest_1013 -0.9 -2.3 phosphoribosylamine--glycine ligase compare
Psest_0161 -0.9 -1.2 Membrane-bound metallopeptidase compare
Psest_0644 -0.9 -3.1 siderophore ferric iron reductase, AHA_1954 family compare
Psest_4307 -0.9 -1.5 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_2613 -0.9 -0.9 hypothetical protein compare
Psest_3784 -0.9 -1.7 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_3005 -0.9 -1.9 Fructose-2,6-bisphosphatase compare
Psest_1752 -0.9 -1.1 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_0186 -0.9 -3.0 Protein-disulfide isomerase compare
Psest_0969 -0.9 -1.1 transcription elongation factor GreA compare
Psest_2527 -0.9 -3.7 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_0511 -0.9 -1.0 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_3502 -0.9 -1.5 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family compare
Psest_3860 -0.8 -1.1 Predicted permeases compare
Psest_3092 -0.8 -1.3 ribonuclease III, bacterial compare
Psest_0660 -0.8 -1.9 Methyl-accepting chemotaxis protein compare
Psest_3173 -0.8 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_0516 -0.8 -3.7 D-alanyl-D-alanine carboxypeptidase compare
Psest_3922 -0.8 -1.9 Response regulator of citrate/malate metabolism compare
Psest_0031 -0.8 -1.1 Uncharacterized conserved protein compare
Psest_1661 -0.8 -1.2 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1588 -0.8 -2.4 Uncharacterized protein involved in copper resistance compare
Psest_3961 -0.8 -2.5 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
Psest_2764 -0.8 -0.8 hypothetical protein compare
Psest_1884 -0.8 -1.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2557 -0.8 -1.5 Protein of unknown function (DUF2474). compare
Psest_3084 -0.8 -1.0 methyltransferase, putative compare
Psest_4006 -0.8 -2.4 hypothetical protein compare
Psest_3813 -0.8 -3.6 ribonuclease PH compare
Psest_1489 -0.8 -2.2 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_2967 -0.8 -2.5 flagellar basal-body rod protein FlgC compare
Psest_0844 -0.8 -1.4 High-affinity Fe2+/Pb2+ permease compare
Psest_2023 -0.8 -1.8 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_1904 -0.8 -1.8 Arabinose efflux permease compare
Psest_4309 -0.8 -2.2 ABC-type Mn/Zn transport systems, ATPase component compare
Psest_3505 -0.8 -3.1 Superfamily II DNA and RNA helicases compare
Psest_1120 -0.8 -2.6 uracil phosphoribosyltransferase compare
Psest_3338 -0.8 -0.7 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_0113 -0.8 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_4177 -0.8 -1.0 flagellar biosynthetic protein FliP compare
Psest_2885 -0.8 -1.5 Acyl carrier protein compare
Psest_0647 -0.8 -3.1 Arabinose efflux permease compare
Psest_3230 -0.8 -2.7 Uncharacterized conserved protein compare
Psest_2530 -0.8 -2.4 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_1947 -0.8 -0.7 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_1475 -0.8 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_4221 -0.7 -1.9 homoserine kinase, Neisseria type compare
Psest_2285 -0.7 -2.0 ATP-dependent protease La compare
Psest_0357 -0.7 -0.9 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2101 -0.7 -1.1 hypothetical protein compare
Psest_3159 -0.7 -2.8 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2899 -0.7 -0.7 hypothetical protein compare
Psest_2983 -0.7 -0.8 hypothetical protein compare
Psest_3890 -0.7 -0.9 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_4151 -0.7 -1.3 Flagellar hook capping protein compare
Psest_1783 -0.7 -1.7 Predicted transporter component compare
Psest_4043 -0.7 -1.5 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_0970 -0.7 -1.2 hypothetical protein compare
Psest_0508 -0.7 -2.7 gamma-glutamyl phosphate reductase compare
Psest_4385 -0.7 -2.9 hypothetical protein compare
Psest_2104 -0.7 -0.9 IscR-regulated protein YhgI compare
Psest_0041 -0.7 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_1354 -0.7 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_1118 -0.7 -1.2 Predicted Fe-S-cluster oxidoreductase compare
Psest_0061 -0.7 -1.8 hypothetical protein compare
Psest_0174 -0.7 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_1818 -0.7 -4.0 GDP-mannose 4,6-dehydratase compare
Psest_1395 -0.7 -1.8 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_0265 -0.7 -2.7 Uncharacterized small membrane protein compare
Psest_1073 -0.7 -1.8 TRAP-type mannitol/chloroaromatic compound transport system, small permease component compare
Psest_3050 -0.7 -1.7 tRNA_Gly_CCC compare
Psest_0709 -0.7 -3.5 pseudouridine synthase, RluA family compare
Psest_2850 -0.7 -0.6 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_2992 -0.7 -2.5 Uncharacterized conserved protein compare
Psest_1292 -0.7 -3.3 monothiol glutaredoxin, Grx4 family compare
Psest_0707 -0.7 -2.8 MYND finger. compare
Psest_0030 -0.7 -1.0 Putative NADH-flavin reductase compare
Psest_1824 -0.7 -1.6 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_3455 -0.7 -1.6 Dihaem cytochrome c. compare
Psest_0152 -0.7 -1.9 Imidazoleglycerol-phosphate dehydratase compare
Psest_3435 -0.7 -2.2 hypothetical protein compare
Psest_3895 -0.7 -1.4 hypothetical protein compare
Psest_0649 -0.7 -3.1 Glutamate decarboxylase and related PLP-dependent proteins compare
Psest_1823 -0.7 -3.9 Nucleoside-diphosphate-sugar epimerases compare
Psest_2281 -0.7 -2.7 Phosphoserine aminotransferase compare
Psest_1677 -0.7 -0.9 Protein-tyrosine-phosphatase compare
Psest_1371 -0.7 -1.8 hypothetical protein compare
Psest_1614 -0.7 -2.8 ABC-type uncharacterized transport system involved in gliding motility, auxiliary component compare
Psest_0193 -0.7 -0.7 conserved hypothetical protein compare
Psest_0105 -0.6 -2.1 malonate decarboxylase, beta subunit compare
Psest_0164 -0.6 -0.4 Glutaredoxin, GrxC family compare


Specific Phenotypes

For 5 genes in this experiment

For stress Aluminum chloride hydrate in Pseudomonas stutzeri RCH2

For stress Aluminum chloride hydrate across organisms