Experiment set17IT014 for Pseudomonas fluorescens SBW25-INTG

Compare to:

p-Coumaric acid (C) 5 mM

Genes with specific phenotypes:

  gene name fitness t score description  
PFLU_RS04810 -4.1 -6.2 LysR family transcriptional regulator conserved
PFLU_RS07250 -3.9 -6.5 M48 family metallopeptidase compare
PFLU_RS10435 -3.1 -9.1 response regulator transcription factor compare
PFLU_RS09220 -2.5 -7.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS28775 -2.4 -10.7 polyamine ABC transporter substrate-binding protein compare
PFLU_RS10440 -2.4 -7.4 sensor histidine kinase compare
PFLU_RS07590 -2.3 -11.4 aspartyl/asparaginyl beta-hydroxylase domain-containing protein compare
PFLU_RS05420 -2.2 -5.4 type 1 fimbrial protein compare
PFLU_RS31190 -1.9 -5.5 taurine ABC transporter substrate-binding protein compare
PFLU_RS24815 -1.8 -6.4 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
PFLU_RS21535 -1.8 -7.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS22085 -1.8 -7.1 DUF2058 domain-containing protein compare
PFLU_RS03675 -1.7 -8.1 acyloxyacyl hydrolase compare
PFLU_RS01595 -1.7 -7.5 AsmA family protein compare
PFLU_RS01990 -1.7 -6.6 nuclease compare
PFLU_RS26365 -1.5 -9.9 TetR/AcrR family transcriptional regulator compare
PFLU_RS10420 -1.4 -5.7 hypothetical protein compare
PFLU_RS21190 -1.4 -6.6 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC compare
PFLU_RS22260 -1.3 -5.7 beta-ketoacyl-ACP synthase III compare
PFLU_RS06720 -1.2 -8.0 MFS transporter compare
PFLU_RS00720 -1.2 -5.2 efflux transporter outer membrane subunit compare
PFLU_RS18895 -1.2 -7.6 DHA2 family efflux MFS transporter permease subunit compare
PFLU_RS06520 -1.2 -5.4 hypothetical protein compare
PFLU_RS14180 -1.1 -7.5 lipid A hydroxylase LpxO compare
PFLU_RS04045 -1.0 -7.1 type III PLP-dependent enzyme compare
PFLU_RS12905 -1.0 -5.7 transglycosylase SLT domain-containing protein compare
PFLU_RS06240 +1.0 6.2 cysteine desulfurase compare
PFLU_RS13280 +1.0 6.1 multidrug efflux RND transporter permease subunit compare
PFLU_RS12870 +1.0 7.6 ABC transporter substrate-binding protein compare
PFLU_RS12890 +1.2 6.3 microcin C ABC transporter permease YejB compare
PFLU_RS13495 +1.2 6.6 response regulator compare
PFLU_RS21800 +1.2 6.2 flagellar assembly protein FliT compare
PFLU_RS29590 +1.2 6.6 serine/threonine-protein phosphatase compare
PFLU_RS03855 +1.2 8.0 glycine oxidase ThiO compare
PFLU_RS24700 +1.2 7.8 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS04095 +1.2 5.6 ABC transporter permease subunit compare
PFLU_RS24715 +1.4 9.5 PTS system trehalose-specific EIIBC component compare
PFLU_RS26645 +1.4 6.9 lytic murein transglycosylase B compare
PFLU_RS21790 +1.4 6.7 PAS domain-containing protein compare
PFLU_RS17365 +1.4 6.2 hypothetical protein compare
PFLU_RS20525 +1.4 7.0 cell division protein compare
PFLU_RS00635 +1.4 5.0 TauD/TfdA family dioxygenase compare
PFLU_RS29970 +1.4 8.1 GTP cyclohydrolase I FolE2 compare
PFLU_RS08365 +1.5 10.8 L,D-transpeptidase family protein compare
PFLU_RS03235 +1.6 5.6 Cu(I)-responsive transcriptional regulator compare
PFLU_RS00270 +1.7 10.1 PA0069 family radical SAM protein compare
PFLU_RS09675 +1.7 5.7 hypothetical protein compare
PFLU_RS29495 +1.8 7.2 YicC family protein compare
PFLU_RS07465 +1.9 8.3 ribonuclease D compare
PFLU_RS04135 +2.0 12.1 HAMP domain-containing histidine kinase compare
PFLU_RS28960 +2.4 11.3 cell division protein ZapA compare
PFLU_RS00380 +2.6 18.4 zinc ABC transporter substrate-binding protein ZnuA compare
PFLU_RS00370 +2.7 18.0 zinc ABC transporter ATP-binding protein ZnuC compare
PFLU_RS29985 +2.8 6.9 metal ABC transporter substrate-binding protein compare
PFLU_RS00365 +2.9 15.9 zinc ABC transporter permease subunit ZnuB compare
PFLU_RS00700 +2.9 10.2 winged helix DNA-binding protein compare
PFLU_RS13295 +3.3 9.4 HAMP domain-containing protein compare
PFLU_RS29980 +4.1 11.3 metal ABC transporter permease compare


Specific phenotypes for carbon source p-Coumaric acid across organisms