Experiment set17IT010 for Pseudomonas stutzeri RCH2

Compare to:

LB with Thallium(I) acetate 0.08 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_0623 -5.1 -16.4 Arsenite efflux pump ACR3 and related permeases conserved
Psest_1809 -4.3 -15.2 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_2304 -3.9 -1.3 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_2566 -3.6 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_2945 -3.4 -1.9 septum site-determining protein MinC compare
Psest_1814 -3.4 -21.2 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0028 -3.3 -5.8 Coproporphyrinogen III oxidase compare
Psest_3960 -3.2 -1.8 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0872 -3.2 -1.5 Helix-turn-helix. compare
Psest_0558 -3.2 -1.1 urease, beta subunit compare
Psest_4134 -3.0 -2.9 Uncharacterized protein conserved in bacteria compare
Psest_3031 -2.9 -1.0 hypothetical protein compare
Psest_3496 -2.7 -2.3 Predicted metal-binding protein compare
Psest_3128 -2.6 -5.0 Protein-disulfide isomerase compare
Psest_0845 -2.5 -1.1 hypothetical protein compare
Psest_2946 -2.5 -2.4 septum site-determining protein MinD compare
Psest_2911 -2.5 -2.1 Protein of unknown function (DUF2945). compare
Psest_3301 -2.4 -3.8 Predicted transcriptional regulator, BolA superfamily compare
Psest_1510 -2.2 -3.0 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3550 -2.2 -2.7 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_0725 -2.2 -2.2 Negative regulator of beta-lactamase expression compare
Psest_0958 -2.2 -7.4 Oligoketide cyclase/lipid transport protein compare
Psest_4219 -2.1 -3.3 DNA polymerase I compare
Psest_1659 -2.1 -3.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1804 -2.1 -2.4 Superfamily II DNA and RNA helicases compare
Psest_3351 -2.0 -5.9 peptide chain release factor 3 compare
Psest_1013 -2.0 -3.0 phosphoribosylamine--glycine ligase compare
Psest_0719 -1.9 -5.8 Uncharacterized protein conserved in bacteria compare
Psest_0644 -1.9 -4.1 siderophore ferric iron reductase, AHA_1954 family compare
Psest_3146 -1.9 -1.9 hypothetical protein compare
Psest_1259 -1.8 -6.0 23S rRNA m2A2503 methyltransferase compare
Psest_0259 -1.8 -1.4 cell division ATP-binding protein FtsE compare
Psest_2538 -1.8 -1.5 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_0487 -1.8 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_0516 -1.8 -6.7 D-alanyl-D-alanine carboxypeptidase compare
Psest_0013 -1.8 -4.8 Lauroyl/myristoyl acyltransferase compare
Psest_2590 -1.7 -1.0 3-isopropylmalate dehydratase, small subunit compare
Psest_1012 -1.7 -4.4 Signal transduction histidine kinase compare
Psest_4191 -1.7 -3.6 Transcriptional regulator compare
Psest_3092 -1.7 -1.9 ribonuclease III, bacterial compare
Psest_3316 -1.6 -6.8 Predicted P-loop-containing kinase compare
Psest_4298 -1.6 -0.9 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_0533 -1.6 -3.9 Sel1 repeat. compare
Psest_0357 -1.6 -2.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4142 -1.6 -1.1 hypothetical protein compare
Psest_3100 -1.6 -1.1 RNA polymerase sigma factor RpoE compare
Psest_3323 -1.5 -4.6 ribonuclease, Rne/Rng family compare
Psest_4044 -1.5 -1.0 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2150 -1.5 -2.3 DNA polymerase LigD, polymerase domain compare
Psest_4098 -1.5 -3.3 Superfamily I DNA and RNA helicases compare
Psest_3322 -1.5 -10.3 TIGR02099 family protein compare
Psest_3456 -1.4 -1.7 RNA polymerase sigma factor, sigma-70 family compare
Psest_0310 -1.4 -3.1 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2384 -1.4 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_2892 -1.4 -2.4 Transcriptional regulator compare
Psest_2308 -1.4 -1.0 Predicted Fe-S protein compare
Psest_2454 -1.4 -1.6 Rhodanese-related sulfurtransferase compare
Psest_2001 -1.4 -1.2 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_1179 -1.4 -1.6 2-hydroxy-3-oxopropionate reductase compare
Psest_0515 -1.4 -3.2 rare lipoprotein A compare
Psest_0060 -1.4 -2.5 Predicted Fe-S protein compare
Psest_2651 -1.4 -4.0 DNA topoisomerase I, bacterial compare
Psest_0442 -1.4 -2.8 ATPases of the AAA+ class compare
Psest_2104 -1.3 -0.9 IscR-regulated protein YhgI compare
Psest_3973 -1.3 -1.1 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_2442 -1.3 -1.8 hypothetical protein compare
Psest_2123 -1.3 -1.5 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_1612 -1.3 -4.4 ABC-type multidrug transport system, ATPase component compare
Psest_0547 -1.3 -2.6 Urease accessory protein UreF compare
Psest_0164 -1.3 -0.7 Glutaredoxin, GrxC family compare
Psest_0175 -1.3 -4.3 Xaa-Pro aminopeptidase compare
Psest_3042 -1.2 -0.9 Nitrate reductase cytochrome c-type subunit compare
Psest_3878 -1.2 -2.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1026 -1.2 -2.4 Uncharacterized iron-regulated protein compare
Psest_0508 -1.2 -4.2 gamma-glutamyl phosphate reductase compare
Psest_1782 -1.2 -1.2 Predicted transcriptional regulators compare
Psest_3080 -1.2 -1.6 AraC-type DNA-binding domain-containing proteins compare
Psest_2278 -1.2 -3.2 coenzyme PQQ biosynthesis protein PqqD compare
Psest_1692 -1.2 -5.0 conserved hypothetical protein, YceG family compare
Psest_0181 -1.1 -4.0 glycine cleavage system T protein compare
Psest_2122 -1.1 -1.0 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1185 -1.1 -2.0 heavy metal response regulator compare
Psest_1813 -1.1 -4.7 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3474 -1.1 -1.7 Short-chain dehydrogenases of various substrate specificities compare
Psest_3002 -1.1 -1.7 Putative translation initiation inhibitor, yjgF family compare
Psest_0498 -1.1 -1.2 ribosome small subunit-dependent GTPase A compare
Psest_1704 -1.1 -1.0 Dehydrogenases (flavoproteins) compare
Psest_2613 -1.1 -1.2 hypothetical protein compare
Psest_1408 -1.1 -2.7 Predicted unusual protein kinase compare
Psest_3173 -1.1 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_1471 -1.0 -3.5 Predicted membrane protein compare
Psest_4170 -1.0 -1.4 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_1305 -1.0 -2.3 Heat shock protein compare
Psest_0260 -1.0 -1.2 Cell division protein compare
Psest_4004 -1.0 -2.9 Uncharacterized conserved protein compare
Psest_0066 -1.0 -1.3 Protein of unknown function (DUF3060). compare
Psest_1136 -1.0 -2.6 Prolyl oligopeptidase family. compare
Psest_3462 -1.0 -3.3 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0708 -1.0 -1.1 outer membrane assembly lipoprotein YfiO compare
Psest_0998 -1.0 -1.2 poly(A) polymerase compare
Psest_4335 -1.0 -1.8 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_2579 -1.0 -3.9 amidophosphoribosyltransferase compare
Psest_1176 -1.0 -2.3 Urea transporter compare
Psest_3212 -1.0 -2.3 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1656 -1.0 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_4078 -1.0 -1.5 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_0999 -1.0 -1.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3145 -1.0 -1.0 hypothetical protein compare
Psest_1111 -1.0 -2.0 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_2775 -1.0 -2.5 Glycerol-3-phosphate dehydrogenase compare
Psest_4042 -0.9 -1.7 hypothetical protein compare
Psest_2358 -0.9 -1.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0191 -0.9 -0.6 PAS domain S-box compare
Psest_1661 -0.9 -1.4 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0083 -0.9 -1.7 Uncharacterized conserved protein compare
Psest_0514 -0.9 -2.6 lytic murein transglycosylase B compare
Psest_3319 -0.9 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_3944 -0.9 -1.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0061 -0.9 -1.5 hypothetical protein compare
Psest_0212 -0.9 -1.3 exodeoxyribonuclease V, gamma subunit compare
Psest_2173 -0.9 -2.6 competence/damage-inducible protein CinA C-terminal domain compare
Psest_4052 -0.9 -2.6 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_2018 -0.9 -1.6 Uncharacterized conserved protein compare
Psest_2285 -0.9 -2.1 ATP-dependent protease La compare
Psest_1204 -0.9 -2.0 Transcriptional regulators compare
Psest_3476 -0.9 -1.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1805 -0.9 -1.1 integration host factor, beta subunit compare
Psest_1905 -0.9 -1.8 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_3123 -0.9 -1.6 dihydroorotase, homodimeric type compare
Psest_1960 -0.9 -2.2 Bacterial protein of unknown function (DUF903). compare
Psest_2848 -0.9 -1.8 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_1089 -0.9 -2.0 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_2860 -0.9 -3.0 hypothetical protein compare
Psest_2981 -0.9 -1.5 sodium pump decarboxylases, gamma subunit compare
Psest_1302 -0.8 -2.0 Predicted thioesterase compare
Psest_1226 -0.8 -1.9 hypothetical protein compare
Psest_0485 -0.8 -2.0 clan AA aspartic protease, TIGR02281 family compare
Psest_2975 -0.8 -0.9 tRNA_Arg_CCT compare
Psest_3166 -0.8 -3.9 Superfamily II DNA and RNA helicases compare
Psest_0186 -0.8 -2.4 Protein-disulfide isomerase compare
Psest_2992 -0.8 -2.7 Uncharacterized conserved protein compare
Psest_2956 -0.8 -2.6 Uncharacterized conserved protein compare
Psest_1824 -0.8 -1.3 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_3787 -0.8 -2.2 Domain of Unknown Function (DUF1080). compare
Psest_4307 -0.8 -1.5 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_4103 -0.8 -0.8 AraC-type DNA-binding domain-containing proteins compare
Psest_1783 -0.8 -1.2 Predicted transporter component compare
Psest_2752 -0.8 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_0970 -0.8 -1.5 hypothetical protein compare
Psest_1371 -0.8 -2.5 hypothetical protein compare
Psest_2918 -0.8 -2.2 amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) compare
Psest_2253 -0.8 -1.5 small redox-active disulfide protein 2 compare
Psest_2798 -0.8 -1.9 Truncated hemoglobins compare
Psest_3749 -0.8 -4.6 Response regulator of the LytR/AlgR family compare
Psest_4258 -0.8 -2.0 ABC-type uncharacterized transport system, auxiliary component compare
Psest_1594 -0.8 -2.6 Predicted metal-binding protein compare
Psest_4273 -0.8 -3.2 Lysophospholipase compare
Psest_2585 -0.8 -0.5 pseudouridylate synthase I compare
Psest_3938 -0.8 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_1029 -0.8 -1.5 Regulator of competence-specific genes compare
Psest_2682 -0.8 -2.0 fumarate hydratase, class II compare
Psest_1295 -0.8 -2.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0115 -0.8 -0.8 Predicted integral membrane protein compare
Psest_1837 -0.8 -3.0 Endoglucanase compare
Psest_4303 -0.8 -1.0 HEAT repeat. compare
Psest_2068 -0.8 -4.0 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3884 -0.8 -0.7 Signal transduction histidine kinase compare
Psest_1474 -0.8 -1.5 phosphoribosylaminoimidazole synthetase compare
Psest_2773 -0.7 -3.2 glycerol kinase compare
Psest_1994 -0.7 -1.8 Amidases related to nicotinamidase compare
Psest_2229 -0.7 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_4371 -0.7 -1.1 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_1325 -0.7 -1.6 Molecular chaperone compare
Psest_1665 -0.7 -2.0 hypothetical protein compare
Psest_1963 -0.7 -1.4 Peptidase inhibitor I78 family. compare
Psest_1048 -0.7 -3.4 Uncharacterized paraquat-inducible protein A compare
Psest_1707 -0.7 -1.9 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_3159 -0.7 -2.8 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0521 -0.7 -3.2 lytic murein transglycosylase compare
Psest_3047 -0.7 -0.5 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_0869 -0.7 -1.4 Acetyltransferase (isoleucine patch superfamily) compare
Psest_3458 -0.7 -1.8 hypothetical protein compare
Psest_3398 -0.7 -1.7 large conductance mechanosensitive channel protein compare
Psest_2719 -0.7 -1.3 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_3910 -0.7 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_2290 -0.7 -2.2 MoxR-like ATPases compare
Psest_0466 -0.7 -1.4 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2772 -0.7 -2.2 MIP family channel proteins compare
Psest_2852 -0.7 -1.7 Outer membrane lipoprotein compare
Psest_2030 -0.7 -2.3 leucyl/phenylalanyl-tRNA--protein transferase compare
Psest_0172 -0.7 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_3084 -0.7 -0.9 methyltransferase, putative compare
Psest_3120 -0.7 -2.6 lactoylglutathione lyase compare
Psest_2953 -0.7 -1.1 Histone acetyltransferase compare
Psest_1337 -0.7 -2.4 Methyl-accepting chemotaxis protein compare
Psest_2044 -0.7 -1.8 ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system compare
Psest_0237 -0.7 -1.5 intracellular protease, PfpI family compare
Psest_3129 -0.7 -0.6 tyrosine recombinase XerD compare
Psest_1472 -0.7 -3.3 Protein of unknown function (DUF3108). compare
Psest_2646 -0.7 -0.7 SOS regulatory protein LexA compare


Specific Phenotypes

For 1 genes in this experiment

For stress Thallium(I) acetate in Pseudomonas stutzeri RCH2

For stress Thallium(I) acetate across organisms